RNA–Protein interactions for RNA: ENST00000557866.1

SPG11-204, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 2

Gene SPG11, Length 468 nt, Biotype non stop decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-204ENST00000557866 FARP1Q9Y4F1 1045 aaPredicted RBP12.55□□□□□ -0.4
SPG11-204ENST00000557866 C19orf67A6NJJ6 358 aa12.54□□□□□ -0.4
SPG11-204ENST00000557866 CREBZFQ9NS37 354 aa12.53□□□□□ -0.4
SPG11-204ENST00000557866 EIF4G1Q04637 1599 aaKnown RBP12.52□□□□□ -0.41
SPG11-204ENST00000557866 FKBP8Q14318 412 aa12.51□□□□□ -0.41
SPG11-204ENST00000557866 CCDC88BA6NC98 1476 aa12.5□□□□□ -0.41
SPG11-204ENST00000557866 SMARCA2P51531 1590 aa12.48□□□□□ -0.41
SPG11-204ENST00000557866 NCAPD3P42695 1498 aa12.45□□□□□ -0.42
SPG11-204ENST00000557866 BAZ1BQ9UIG0 1483 aaKnown RBP12.45□□□□□ -0.42
SPG11-204ENST00000557866 CD44P16070 742 aaKnown RBP12.4□□□□□ -0.42
SPG11-204ENST00000557866 HMGXB3Q12766 1538 aa12.37□□□□□ -0.43
SPG11-204ENST00000557866 NPM1P06748 294 aaKnown RBP eCLIP12.37□□□□□ -0.43
SPG11-204ENST00000557866 MNX1P50219 401 aaPredicted RBP12.34□□□□□ -0.43
SPG11-204ENST00000557866 PLEKHG5O94827 1062 aa12.33□□□□□ -0.44
SPG11-204ENST00000557866 MIER1Q8N108 512 aa12.32□□□□□ -0.44
SPG11-204ENST00000557866 CC2D2AQ9P2K1 1620 aa12.32□□□□□ -0.44
SPG11-204ENST00000557866 TRIM41Q8WV44 630 aa12.31□□□□□ -0.44
SPG11-204ENST00000557866 GABBR2O75899 941 aa12.29□□□□□ -0.44
SPG11-204ENST00000557866 CLCN6P51797 869 aa12.28□□□□□ -0.44
SPG11-204ENST00000557866 PAK3O75914 559 aaPredicted RBP12.27□□□□□ -0.45
SPG11-204ENST00000557866 ZRANB1Q9UGI0 708 aa12.27□□□□□ -0.45
SPG11-204ENST00000557866 PLCD3Q8N3E9 789 aa12.25□□□□□ -0.45
SPG11-204ENST00000557866 FBXO3Q9UK99 471 aa12.25□□□□□ -0.45
SPG11-204ENST00000557866 ZNF579Q8NAF0 562 aaKnown RBP12.22□□□□□ -0.45
SPG11-204ENST00000557866 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
SPG11-204ENST00000557866 LHX8Q68G74 356 aa12.18□□□□□ -0.46
SPG11-204ENST00000557866 ZBTB47Q9UFB7 747 aaPredicted RBP12.18□□□□□ -0.46
SPG11-204ENST00000557866 CFTRP13569 1480 aa12.18□□□□□ -0.46
SPG11-204ENST00000557866 LOC105371045A0A1W2PR82 267 aa12.15□□□□□ -0.46
SPG11-204ENST00000557866 CADPSQ9ULU8 1353 aa12.15□□□□□ -0.46
SPG11-204ENST00000557866 WRNQ14191 1432 aaPredicted RBP eCLIP12.14□□□□□ -0.47
SPG11-204ENST00000557866 FAM9AQ8IZU1 332 aaPredicted RBP12.12□□□□□ -0.47
SPG11-204ENST00000557866 TSPYL2Q9H2G4 693 aaPredicted RBP12.1□□□□□ -0.47
SPG11-204ENST00000557866 PHF12Q96QT6 1004 aa12.08□□□□□ -0.48
SPG11-204ENST00000557866 SYNJ1O43426 1573 aa12.08□□□□□ -0.48
SPG11-204ENST00000557866 SOGA1O94964 1423 aa12.05□□□□□ -0.48
SPG11-204ENST00000557866 DCBLD2Q96PD2 775 aa12.05□□□□□ -0.48
SPG11-204ENST00000557866 VASPP50552 380 aaPredicted RBP12.04□□□□□ -0.48
SPG11-204ENST00000557866 RASEFQ8IZ41 740 aa12.04□□□□□ -0.48
SPG11-204ENST00000557866 GALR2O43603 387 aaPredicted RBP12.03□□□□□ -0.48
SPG11-204ENST00000557866 CCDC61Q9Y6R9 512 aa12.03□□□□□ -0.48
SPG11-204ENST00000557866 NESP48681 1621 aa12.02□□□□□ -0.49
SPG11-204ENST00000557866 CUX1P39880 1505 aa12.01□□□□□ -0.49
SPG11-204ENST00000557866 RUSC2Q8N2Y8 1516 aa12.01□□□□□ -0.49
SPG11-204ENST00000557866 NUBP1P53384 320 aa12.01□□□□□ -0.49
SPG11-204ENST00000557866 POTEIP0CG38 1075 aa12□□□□□ -0.49
SPG11-204ENST00000557866 TOP2BQ02880 1626 aa12□□□□□ -0.49
SPG11-204ENST00000557866 FANCD2Q9BXW9 1451 aa11.98□□□□□ -0.49
SPG11-204ENST00000557866 EEA1Q15075 1411 aa11.96□□□□□ -0.49
SPG11-204ENST00000557866 KLHL34Q8N239 644 aa11.96□□□□□ -0.49
SPG11-204ENST00000557866 BIVM-ERCC5R4GMW8 1640 aa11.96□□□□□ -0.5
SPG11-204ENST00000557866 FAM212AQ96EL1 285 aa11.95□□□□□ -0.5
SPG11-204ENST00000557866 LAMC3Q9Y6N6 1575 aa11.94□□□□□ -0.5
SPG11-204ENST00000557866 KIF12Q96FN5 646 aa11.94□□□□□ -0.5
SPG11-204ENST00000557866 MS4A3Q96HJ5 214 aa11.94□□□□□ -0.5
SPG11-204ENST00000557866 PRDM2Q13029 1718 aa11.92□□□□□ -0.5
SPG11-204ENST00000557866 PDS5BQ9NTI5 1447 aa11.89□□□□□ -0.51
SPG11-204ENST00000557866 DCAF8Q5TAQ9 597 aa11.89□□□□□ -0.51
SPG11-204ENST00000557866 MAP3K13O43283 966 aa11.88□□□□□ -0.51
SPG11-204ENST00000557866 SGIP1Q9BQI5 828 aa11.87□□□□□ -0.51
SPG11-204ENST00000557866 CEP164Q9UPV0 1460 aa11.87□□□□□ -0.51
SPG11-204ENST00000557866 FGD5Q6ZNL6 1462 aa11.86□□□□□ -0.51
SPG11-204ENST00000557866 TOPBP1Q92547 1522 aa11.86□□□□□ -0.51
SPG11-204ENST00000557866 URB2Q14146 1524 aaKnown RBP11.85□□□□□ -0.51
SPG11-204ENST00000557866 DNMBPQ6XZF7 1577 aa11.84□□□□□ -0.51
SPG11-204ENST00000557866 ASTLQ6HA08 431 aaPredicted RBP11.83□□□□□ -0.52
SPG11-204ENST00000557866 IFNLR1Q8IU57 520 aaPredicted RBP11.83□□□□□ -0.52
SPG11-204ENST00000557866 KIF27Q86VH2 1401 aa11.83□□□□□ -0.52
SPG11-204ENST00000557866 TNIKQ9UKE5 1360 aa11.81□□□□□ -0.52
SPG11-204ENST00000557866 GSE1Q14687 1217 aa11.81□□□□□ -0.52
SPG11-204ENST00000557866 PCDHB13Q9Y5F0 798 aa11.81□□□□□ -0.52
SPG11-204ENST00000557866 POLA1P09884 1462 aaPredicted RBP11.81□□□□□ -0.52
SPG11-204ENST00000557866 GOLGA3Q08378 1498 aa11.81□□□□□ -0.52
SPG11-204ENST00000557866 ATMINO43313 823 aaPredicted RBP11.8□□□□□ -0.52
SPG11-204ENST00000557866 CUX2O14529 1486 aa11.8□□□□□ -0.52
SPG11-204ENST00000557866 RAD54L2Q9Y4B4 1467 aa11.8□□□□□ -0.52
SPG11-204ENST00000557866 PRXQ9BXM0 1461 aa11.79□□□□□ -0.52
SPG11-204ENST00000557866 SPOCK2Q92563 424 aa11.79□□□□□ -0.52
SPG11-204ENST00000557866 IGF1RP08069 1367 aa11.79□□□□□ -0.52
SPG11-204ENST00000557866 RAPGEF2Q9Y4G8 1499 aa11.78□□□□□ -0.52
SPG11-204ENST00000557866 UBTFP17480 764 aaKnown RBP11.78□□□□□ -0.52
SPG11-204ENST00000557866 KIF21BO75037 1637 aa11.78□□□□□ -0.52
SPG11-204ENST00000557866 TIE1P35590 1138 aa11.77□□□□□ -0.53
SPG11-204ENST00000557866 PELP1Q8IZL8 1130 aaKnown RBP11.77□□□□□ -0.53
SPG11-204ENST00000557866 KIF21AQ7Z4S6 1674 aa11.76□□□□□ -0.53
SPG11-204ENST00000557866 ABCA10Q8WWZ4 1543 aa11.76□□□□□ -0.53
SPG11-204ENST00000557866 PYGBP11216 843 aa11.75□□□□□ -0.53
SPG11-204ENST00000557866 TRPC6Q9Y210 931 aa11.75□□□□□ -0.53
SPG11-204ENST00000557866 IFNL1Q8IU54 200 aa11.74□□□□□ -0.53
SPG11-204ENST00000557866 SLC39A7Q92504 469 aa11.74□□□□□ -0.53
SPG11-204ENST00000557866 BMP2KQ9NSY1 1161 aaPredicted RBP11.74□□□□□ -0.53
SPG11-204ENST00000557866 CEP162Q5TB80 1403 aa11.74□□□□□ -0.53
SPG11-204ENST00000557866 MRC2Q9UBG0 1479 aa11.74□□□□□ -0.53
SPG11-204ENST00000557866 C7P10643 843 aa11.73□□□□□ -0.53
SPG11-204ENST00000557866 ATN1P54259 1190 aaPredicted RBP11.73□□□□□ -0.53
SPG11-204ENST00000557866 ERICH3Q5RHP9 1530 aa11.7□□□□□ -0.54
SPG11-204ENST00000557866 PLSCR2Q9NRY7 297 aa11.7□□□□□ -0.54
SPG11-204ENST00000557866 CARMIL1Q5VZK9 1371 aa11.69□□□□□ -0.54
SPG11-204ENST00000557866 CHRM1P11229 460 aaPredicted RBP11.69□□□□□ -0.54
SPG11-204ENST00000557866 TDRD9Q8NDG6 1382 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms