RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 SLC4A1APQ9BWU0 796 aaKnown RBP20.41■□□□□ 0.86
ARHGEF40-207ENST00000556399 RRP7BPQ9NSQ0 103 aa20.37■□□□□ 0.85
ARHGEF40-207ENST00000556399 RUSC2Q8N2Y8 1516 aa20.36■□□□□ 0.85
ARHGEF40-207ENST00000556399 TSHZ2Q9NRE2 1034 aa20.35■□□□□ 0.85
ARHGEF40-207ENST00000556399 ZBTB47Q9UFB7 747 aaPredicted RBP20.34■□□□□ 0.85
ARHGEF40-207ENST00000556399 TMC1Q8TDI8 760 aa20.34■□□□□ 0.85
ARHGEF40-207ENST00000556399 SALL2Q9Y467 1007 aaPredicted RBP20.31■□□□□ 0.84
ARHGEF40-207ENST00000556399 FBLN2P98095 1184 aa20.31■□□□□ 0.84
ARHGEF40-207ENST00000556399 CCER2I3L3R5 266 aa20.29■□□□□ 0.84
ARHGEF40-207ENST00000556399 RBM19Q9Y4C8 960 aaKnown RBP20.29■□□□□ 0.84
ARHGEF40-207ENST00000556399 SETD5Q9C0A6 1442 aa20.29■□□□□ 0.84
ARHGEF40-207ENST00000556399 TIMELESSQ9UNS1 1208 aa20.29■□□□□ 0.84
ARHGEF40-207ENST00000556399 DHX57Q6P158 1386 aaKnown RBP20.26■□□□□ 0.83
ARHGEF40-207ENST00000556399 RAB3GAP2Q9H2M9 1393 aa20.26■□□□□ 0.83
ARHGEF40-207ENST00000556399 RAPGEF2Q9Y4G8 1499 aa20.25■□□□□ 0.83
ARHGEF40-207ENST00000556399 PPP4R2Q9NY27 417 aa20.24■□□□□ 0.83
ARHGEF40-207ENST00000556399 CANXP27824 592 aaKnown RBP20.22■□□□□ 0.83
ARHGEF40-207ENST00000556399 FHAD1B1AJZ9 1412 aa20.2■□□□□ 0.82
ARHGEF40-207ENST00000556399 KCNH8Q96L42 1107 aa20.17■□□□□ 0.82
ARHGEF40-207ENST00000556399 CARMIL1Q5VZK9 1371 aa20.16■□□□□ 0.82
ARHGEF40-207ENST00000556399 BCL11AQ9H165 835 aa20.16■□□□□ 0.82
ARHGEF40-207ENST00000556399 SMARCA4P51532 1647 aa20.15■□□□□ 0.82
ARHGEF40-207ENST00000556399 SENP3-EIF4A1A0A087X0R7 540 aa20.15■□□□□ 0.82
ARHGEF40-207ENST00000556399 KDM2AQ9Y2K7 1162 aa20.15■□□□□ 0.82
ARHGEF40-207ENST00000556399 CUX2O14529 1486 aa20.14■□□□□ 0.82
ARHGEF40-207ENST00000556399 B4GALNT3Q6L9W6 998 aa20.13■□□□□ 0.81
ARHGEF40-207ENST00000556399 PPP1R15AO75807 674 aaPredicted RBP20.09■□□□□ 0.81
ARHGEF40-207ENST00000556399 SMARCA2P51531 1590 aa20.08■□□□□ 0.81
ARHGEF40-207ENST00000556399 ARHGAP35Q9NRY4 1499 aa20.07■□□□□ 0.8
ARHGEF40-207ENST00000556399 NOP58Q9Y2X3 529 aaKnown RBP20.06■□□□□ 0.8
ARHGEF40-207ENST00000556399 HSPA5P11021 654 aaKnown RBP20.05■□□□□ 0.8
ARHGEF40-207ENST00000556399 EIF5BO60841 1220 aaKnown RBP20.04■□□□□ 0.8
ARHGEF40-207ENST00000556399 TSPY4P0CV99 314 aa20.01■□□□□ 0.79
ARHGEF40-207ENST00000556399 TSPY10P0CW01 314 aa20.01■□□□□ 0.79
ARHGEF40-207ENST00000556399 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.99■□□□□ 0.79
ARHGEF40-207ENST00000556399 WDR43Q15061 677 aaKnown RBP eCLIP19.98■□□□□ 0.79
ARHGEF40-207ENST00000556399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.98■□□□□ 0.791e-6■■□□□ 13.1
ARHGEF40-207ENST00000556399 ERICH6BQ5W0A0 696 aa19.97■□□□□ 0.79
ARHGEF40-207ENST00000556399 CARD11Q9BXL7 1154 aa19.94■□□□□ 0.78
ARHGEF40-207ENST00000556399 KIF21BO75037 1637 aa19.93■□□□□ 0.78
ARHGEF40-207ENST00000556399 DDRGK1Q96HY6 314 aa19.93■□□□□ 0.78
ARHGEF40-207ENST00000556399 UPF2Q9HAU5 1272 aaKnown RBP19.93■□□□□ 0.78
ARHGEF40-207ENST00000556399 DEKP35659 375 aaKnown RBP19.92■□□□□ 0.78
ARHGEF40-207ENST00000556399 ATAD2BQ9ULI0 1458 aa19.91■□□□□ 0.78
ARHGEF40-207ENST00000556399 CFDP1Q9UEE9 299 aaPredicted RBP19.9■□□□□ 0.78
ARHGEF40-207ENST00000556399 LAS1LQ9Y4W2 734 aaKnown RBP19.88■□□□□ 0.77
ARHGEF40-207ENST00000556399 FOXD1Q16676 465 aa19.87■□□□□ 0.77
ARHGEF40-207ENST00000556399 PPM1GO15355 546 aaPredicted RBP19.85■□□□□ 0.77
ARHGEF40-207ENST00000556399 RGL3Q3MIN7 710 aa19.85■□□□□ 0.77
ARHGEF40-207ENST00000556399 NEFMP07197 916 aa19.84■□□□□ 0.77
ARHGEF40-207ENST00000556399 FHOD3Q2V2M9 1422 aa19.83■□□□□ 0.77
ARHGEF40-207ENST00000556399 FMN1Q68DA7 1419 aa19.82■□□□□ 0.76
ARHGEF40-207ENST00000556399 MPHOSPH9Q99550 1183 aa19.82■□□□□ 0.76
ARHGEF40-207ENST00000556399 CHMP7Q8WUX9 453 aaPredicted RBP19.8■□□□□ 0.76
ARHGEF40-207ENST00000556399 PLEKHD1A6NEE1 506 aa19.78■□□□□ 0.76
ARHGEF40-207ENST00000556399 ARXQ96QS3 562 aa19.78■□□□□ 0.76
ARHGEF40-207ENST00000556399 L3MBTL2Q969R5 705 aa19.78■□□□□ 0.76
ARHGEF40-207ENST00000556399 EIF4G1Q04637 1599 aaKnown RBP19.78■□□□□ 0.76
ARHGEF40-207ENST00000556399 RTN4Q9NQC3 1192 aaKnown RBP19.77■□□□□ 0.75
ARHGEF40-207ENST00000556399 CHGAP10645 457 aaKnown RBP19.76■□□□□ 0.75
ARHGEF40-207ENST00000556399 HSP90AA1P07900 732 aaKnown RBP19.75■□□□□ 0.75
ARHGEF40-207ENST00000556399 SYNJ1O43426 1573 aa19.74■□□□□ 0.75
ARHGEF40-207ENST00000556399 RRBP1Q9P2E9 1410 aaKnown RBP19.73■□□□□ 0.75
ARHGEF40-207ENST00000556399 CC2D1BQ5T0F9 858 aaKnown RBP19.72■□□□□ 0.75
ARHGEF40-207ENST00000556399 NUDCQ9Y266 331 aa19.71■□□□□ 0.75
ARHGEF40-207ENST00000556399 KNSTRNQ9Y448 316 aa19.71■□□□□ 0.75
ARHGEF40-207ENST00000556399 BECN1Q14457 450 aa19.7■□□□□ 0.74
ARHGEF40-207ENST00000556399 DCAF11Q8TEB1 546 aa19.7■□□□□ 0.74
ARHGEF40-207ENST00000556399 FANCIQ9NVI1 1328 aa19.7■□□□□ 0.74
ARHGEF40-207ENST00000556399 ARAP1Q96P48 1450 aa19.7■□□□□ 0.74
ARHGEF40-207ENST00000556399 CCDC18Q5T9S5 1454 aa19.69■□□□□ 0.74
ARHGEF40-207ENST00000556399 PHLDB1Q86UU1 1377 aa19.68■□□□□ 0.74
ARHGEF40-207ENST00000556399 RGS3P49796 1198 aa19.68■□□□□ 0.74
ARHGEF40-207ENST00000556399 ANP32BQ92688 251 aaKnown RBP19.67■□□□□ 0.74
ARHGEF40-207ENST00000556399 PRKRIP1Q9H875 184 aaPredicted RBP19.67■□□□□ 0.74
ARHGEF40-207ENST00000556399 PKD2Q13563 968 aa19.67■□□□□ 0.74
ARHGEF40-207ENST00000556399 IPO9Q96P70 1041 aaKnown RBP19.66■□□□□ 0.74
ARHGEF40-207ENST00000556399 RCAN3Q9UKA8 241 aa19.64■□□□□ 0.74
ARHGEF40-207ENST00000556399 ERICH3Q5RHP9 1530 aa19.64■□□□□ 0.73
ARHGEF40-207ENST00000556399 IGF1RP08069 1367 aa19.64■□□□□ 0.73
ARHGEF40-207ENST00000556399 TDRD9Q8NDG6 1382 aaKnown RBP19.63■□□□□ 0.73
ARHGEF40-207ENST00000556399 CADPSQ9ULU8 1353 aa19.63■□□□□ 0.73
ARHGEF40-207ENST00000556399 ZBED9Q6R2W3 1325 aa19.63■□□□□ 0.73
ARHGEF40-207ENST00000556399 LRRC9Q6ZRR7 1453 aa19.62■□□□□ 0.73
ARHGEF40-207ENST00000556399 CDCA8Q53HL2 280 aa19.62■□□□□ 0.73
ARHGEF40-207ENST00000556399 TCERG1O14776 1098 aaKnown RBP19.62■□□□□ 0.73
ARHGEF40-207ENST00000556399 RALBP1Q15311 655 aa19.58■□□□□ 0.73
ARHGEF40-207ENST00000556399 KTN1Q86UP2 1357 aaKnown RBP19.58■□□□□ 0.72
ARHGEF40-207ENST00000556399 GLIPR1L2Q4G1C9 344 aa19.58■□□□□ 0.72
ARHGEF40-207ENST00000556399 TMF1P82094 1093 aa19.56■□□□□ 0.72
ARHGEF40-207ENST00000556399 PRXQ9BXM0 1461 aa19.56■□□□□ 0.72
ARHGEF40-207ENST00000556399 FGD6Q6ZV73 1430 aa19.55■□□□□ 0.72
ARHGEF40-207ENST00000556399 UACAQ9BZF9 1416 aa19.54■□□□□ 0.72
ARHGEF40-207ENST00000556399 NEUROD2Q15784 382 aa19.52■□□□□ 0.72
ARHGEF40-207ENST00000556399 FRAT1Q92837 279 aaPredicted RBP19.5■□□□□ 0.71
ARHGEF40-207ENST00000556399 ROCK2O75116 1388 aaKnown RBP19.5■□□□□ 0.71
ARHGEF40-207ENST00000556399 NUP155O75694 1391 aa19.5■□□□□ 0.71
ARHGEF40-207ENST00000556399 WASHC2AQ641Q2 1341 aa19.49■□□□□ 0.71
ARHGEF40-207ENST00000556399 SLC24A1O60721 1099 aa19.49■□□□□ 0.71
ARHGEF40-207ENST00000556399 FGD5Q6ZNL6 1462 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms