RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 HIRIP3Q9BW71 556 aaPredicted RBP23.05■■□□□ 1.28
SYNE3-204ENST00000555759 PABPN1Q86U42 306 aaKnown RBP eCLIP23.01■■□□□ 1.27
SYNE3-204ENST00000555759 GOLGA3Q08378 1498 aa23.01■■□□□ 1.27
SYNE3-204ENST00000555759 ZNF777Q9ULD5 760 aaPredicted RBP23■■□□□ 1.27
SYNE3-204ENST00000555759 ABCC9O60706 1549 aa23■■□□□ 1.27
SYNE3-204ENST00000555759 CCER2I3L3R5 266 aa22.99■■□□□ 1.27
SYNE3-204ENST00000555759 TSHZ2Q9NRE2 1034 aa22.99■■□□□ 1.27
SYNE3-204ENST00000555759 SLC24A1O60721 1099 aa22.99■■□□□ 1.27
SYNE3-204ENST00000555759 NCLP19338 710 aaKnown RBP22.99■■□□□ 1.27
SYNE3-204ENST00000555759 L1TD1Q5T7N2 865 aaKnown RBP22.96■■□□□ 1.27
SYNE3-204ENST00000555759 TNIKQ9UKE5 1360 aa22.95■■□□□ 1.26
SYNE3-204ENST00000555759 MYH16Q9H6N6 1097 aa22.93■■□□□ 1.26
SYNE3-204ENST00000555759 PTMAP06454 111 aaKnown RBP22.9■■□□□ 1.26
SYNE3-204ENST00000555759 B4GALNT3Q6L9W6 998 aa22.89■■□□□ 1.25
SYNE3-204ENST00000555759 CHIC2Q9UKJ5 165 aa22.88■■□□□ 1.25
SYNE3-204ENST00000555759 ARID3CA6NKF2 412 aa22.88■■□□□ 1.25
SYNE3-204ENST00000555759 TIMELESSQ9UNS1 1208 aa22.87■■□□□ 1.25
SYNE3-204ENST00000555759 MTUS2Q5JR59 1369 aa22.87■■□□□ 1.25
SYNE3-204ENST00000555759 DNTTIP2Q5QJE6 756 aaKnown RBP22.86■■□□□ 1.25
SYNE3-204ENST00000555759 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
SYNE3-204ENST00000555759 CDK11BP21127 795 aaKnown RBP22.77■■□□□ 1.24
SYNE3-204ENST00000555759 KDM2AQ9Y2K7 1162 aa22.75■■□□□ 1.23
SYNE3-204ENST00000555759 RSF1Q96T23 1441 aaPredicted RBP22.74■■□□□ 1.23
SYNE3-204ENST00000555759 CEP164Q9UPV0 1460 aa22.71■■□□□ 1.23
SYNE3-204ENST00000555759 FBLN2P98095 1184 aa22.7■■□□□ 1.22
SYNE3-204ENST00000555759 RGS3P49796 1198 aa22.7■■□□□ 1.22
SYNE3-204ENST00000555759 MSNP26038 577 aaKnown RBP22.69■■□□□ 1.22
SYNE3-204ENST00000555759 CASC1Q6TDU7 716 aa22.68■■□□□ 1.22
SYNE3-204ENST00000555759 TSPY4P0CV99 314 aa22.68■■□□□ 1.22
SYNE3-204ENST00000555759 TSPY10P0CW01 314 aa22.68■■□□□ 1.22
SYNE3-204ENST00000555759 IPO9Q96P70 1041 aaKnown RBP22.68■■□□□ 1.22
SYNE3-204ENST00000555759 TCERG1O14776 1098 aaKnown RBP22.67■■□□□ 1.22
SYNE3-204ENST00000555759 PNNQ9H307 717 aaKnown RBP22.65■■□□□ 1.22
SYNE3-204ENST00000555759 CDCA8Q53HL2 280 aa22.65■■□□□ 1.22
SYNE3-204ENST00000555759 RRP7BPQ9NSQ0 103 aa22.64■■□□□ 1.22
SYNE3-204ENST00000555759 USP35Q9P2H5 1018 aa22.64■■□□□ 1.21
SYNE3-204ENST00000555759 SIN3AQ96ST3 1273 aa22.62■■□□□ 1.21
SYNE3-204ENST00000555759 HSP90AB1P08238 724 aaKnown RBP22.62■■□□□ 1.21
SYNE3-204ENST00000555759 PTMSP20962 102 aa22.61■■□□□ 1.21
SYNE3-204ENST00000555759 FTSJ3Q8IY81 847 aaKnown RBP22.61■■□□□ 1.21
SYNE3-204ENST00000555759 MS4A1P11836 297 aa22.6■■□□□ 1.21
SYNE3-204ENST00000555759 CHAF1AQ13111 956 aaPredicted RBP22.6■■□□□ 1.21
SYNE3-204ENST00000555759 CHGAP10645 457 aaKnown RBP22.6■■□□□ 1.21
SYNE3-204ENST00000555759 HSCBQ8IWL3 235 aa22.6■■□□□ 1.21
SYNE3-204ENST00000555759 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.59■■□□□ 1.21
SYNE3-204ENST00000555759 KNSTRNQ9Y448 316 aa22.59■■□□□ 1.21
SYNE3-204ENST00000555759 CFAP53Q96M91 514 aa22.58■■□□□ 1.2
SYNE3-204ENST00000555759 RSPH6AQ9H0K4 717 aa22.58■■□□□ 1.2
SYNE3-204ENST00000555759 CHMP4BQ9H444 224 aaKnown RBP22.58■■□□□ 1.2
SYNE3-204ENST00000555759 CCNB3Q8WWL7 1395 aa22.57■■□□□ 1.2
SYNE3-204ENST00000555759 ZRSR1Q15695 479 aaKnown RBP22.56■■□□□ 1.2
SYNE3-204ENST00000555759 CARD11Q9BXL7 1154 aa22.54■■□□□ 1.2
SYNE3-204ENST00000555759 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.54■■□□□ 1.2
SYNE3-204ENST00000555759 FANCIQ9NVI1 1328 aa22.53■■□□□ 1.2
SYNE3-204ENST00000555759 WRNQ14191 1432 aaPredicted RBP eCLIP22.51■■□□□ 1.19
SYNE3-204ENST00000555759 GOLGA6L6A8MZA4 724 aa22.51■■□□□ 1.19
SYNE3-204ENST00000555759 SENP3-EIF4A1A0A087X0R7 540 aa22.48■■□□□ 1.19
SYNE3-204ENST00000555759 NRDCO43847 1150 aa22.47■■□□□ 1.19
SYNE3-204ENST00000555759 CFAP44Q96MT7 982 aa22.46■■□□□ 1.19
SYNE3-204ENST00000555759 GBP4Q96PP9 640 aa22.46■■□□□ 1.19
SYNE3-204ENST00000555759 GOLGA6L3A6NEY3 463 aa22.45■■□□□ 1.18
SYNE3-204ENST00000555759 RB1CC1Q8TDY2 1594 aa22.45■■□□□ 1.18
SYNE3-204ENST00000555759 PLCB2Q00722 1185 aa22.43■■□□□ 1.18
SYNE3-204ENST00000555759 SETD5Q9C0A6 1442 aa22.43■■□□□ 1.18
SYNE3-204ENST00000555759 FRAT1Q92837 279 aaPredicted RBP22.42■■□□□ 1.18
SYNE3-204ENST00000555759 STAG3Q9UJ98 1225 aa22.41■■□□□ 1.18
SYNE3-204ENST00000555759 HSP90AA2PQ14568 343 aaPredicted RBP22.4■■□□□ 1.18
SYNE3-204ENST00000555759 RCAN3Q9UKA8 241 aa22.39■■□□□ 1.18
SYNE3-204ENST00000555759 VPS8Q8N3P4 1428 aa22.38■■□□□ 1.17
SYNE3-204ENST00000555759 NUDCQ9Y266 331 aa22.38■■□□□ 1.17
SYNE3-204ENST00000555759 HSPA5P11021 654 aaKnown RBP22.37■■□□□ 1.17
SYNE3-204ENST00000555759 KIF27Q86VH2 1401 aa22.36■■□□□ 1.17
SYNE3-204ENST00000555759 KIAA2012Q0VF49 1180 aa22.35■■□□□ 1.17
SYNE3-204ENST00000555759 MAPK8IP3Q9UPT6 1336 aa22.33■■□□□ 1.17
SYNE3-204ENST00000555759 GSE1Q14687 1217 aa22.33■■□□□ 1.17
SYNE3-204ENST00000555759 ARID4BQ4LE39 1312 aaPredicted RBP22.33■■□□□ 1.17
SYNE3-204ENST00000555759 FHAD1B1AJZ9 1412 aa22.31■■□□□ 1.16
SYNE3-204ENST00000555759 RGL3Q3MIN7 710 aa22.3■■□□□ 1.16
SYNE3-204ENST00000555759 NEUROD2Q15784 382 aa22.29■■□□□ 1.16
SYNE3-204ENST00000555759 SLKQ9H2G2 1235 aaPredicted RBP22.29■■□□□ 1.16
SYNE3-204ENST00000555759 CC2D1BQ5T0F9 858 aaKnown RBP22.28■■□□□ 1.16
SYNE3-204ENST00000555759 GZF1Q9H116 711 aaPredicted RBP22.28■■□□□ 1.16
SYNE3-204ENST00000555759 SPRYD3Q8NCJ5 442 aa22.27■■□□□ 1.16
SYNE3-204ENST00000555759 RALBP1Q15311 655 aa22.27■■□□□ 1.16
SYNE3-204ENST00000555759 ESF1Q9H501 851 aaKnown RBP22.26■■□□□ 1.15
SYNE3-204ENST00000555759 TPRNQ4KMQ1 711 aa22.26■■□□□ 1.15
SYNE3-204ENST00000555759 TMF1P82094 1093 aa22.25■■□□□ 1.15
SYNE3-204ENST00000555759 PDE3BQ13370 1112 aa22.25■■□□□ 1.15
SYNE3-204ENST00000555759 GOLGA6L4A6NEF3 574 aa22.25■■□□□ 1.15
SYNE3-204ENST00000555759 KTN1Q86UP2 1357 aaKnown RBP22.25■■□□□ 1.15
SYNE3-204ENST00000555759 MCCP23508 829 aa22.25■■□□□ 1.15
SYNE3-204ENST00000555759 VSIG10Q8N0Z9 540 aa22.24■■□□□ 1.15
SYNE3-204ENST00000555759 PPP1R15AO75807 674 aaPredicted RBP22.24■■□□□ 1.15
SYNE3-204ENST00000555759 SYAP1Q96A49 352 aaPredicted RBP22.23■■□□□ 1.15
SYNE3-204ENST00000555759 RWDD1Q9H446 243 aaPredicted RBP22.23■■□□□ 1.15
SYNE3-204ENST00000555759 RAB3GAP2Q9H2M9 1393 aa22.21■■□□□ 1.15
SYNE3-204ENST00000555759 CFDP1Q9UEE9 299 aaPredicted RBP22.2■■□□□ 1.14
SYNE3-204ENST00000555759 DRC7Q8IY82 874 aa22.19■■□□□ 1.14
SYNE3-204ENST00000555759 PMFBP1Q8TBY8 1022 aa22.19■■□□□ 1.14
SYNE3-204ENST00000555759 DDX11L8A8MPP1 907 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms