RNA–Protein interactions for RNA: ENST00000550418.5

RBFOX1-212, Transcript of RNA binding fox-1 homolog 1, humanhuman

TSL 1 (best) BASIC

Gene RBFOX1, Length 4,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBFOX1-212ENST00000550418 NOP58Q9Y2X3 529 aaKnown RBP21.08■□□□□ 0.97
RBFOX1-212ENST00000550418 NEFMP07197 916 aa21.08■□□□□ 0.96
RBFOX1-212ENST00000550418 PPM1GO15355 546 aaPredicted RBP21.06■□□□□ 0.96
RBFOX1-212ENST00000550418 EIF4G2P78344 907 aaKnown RBP eCLIP21.05■□□□□ 0.96
RBFOX1-212ENST00000550418 RTN4Q9NQC3 1192 aaKnown RBP21.05■□□□□ 0.96
RBFOX1-212ENST00000550418 DEKP35659 375 aaKnown RBP21.02■□□□□ 0.96
RBFOX1-212ENST00000550418 ZNF777Q9ULD5 760 aaPredicted RBP21.02■□□□□ 0.96
RBFOX1-212ENST00000550418 ERICH6BQ5W0A0 696 aa21■□□□□ 0.95
RBFOX1-212ENST00000550418 SOGA1O94964 1423 aa20.99■□□□□ 0.95
RBFOX1-212ENST00000550418 TSHZ2Q9NRE2 1034 aa20.99■□□□□ 0.95
RBFOX1-212ENST00000550418 CCDC88BA6NC98 1476 aa20.98■□□□□ 0.95
RBFOX1-212ENST00000550418 CHMP7Q8WUX9 453 aaPredicted RBP20.97■□□□□ 0.95
RBFOX1-212ENST00000550418 ESF1Q9H501 851 aaKnown RBP20.96■□□□□ 0.95
RBFOX1-212ENST00000550418 CHIC2Q9UKJ5 165 aa20.96■□□□□ 0.95
RBFOX1-212ENST00000550418 LAS1LQ9Y4W2 734 aaKnown RBP20.94■□□□□ 0.94
RBFOX1-212ENST00000550418 EEA1Q15075 1411 aa20.94■□□□□ 0.94
RBFOX1-212ENST00000550418 BECN1Q14457 450 aa20.94■□□□□ 0.94
RBFOX1-212ENST00000550418 GOLGA3Q08378 1498 aa20.94■□□□□ 0.94
RBFOX1-212ENST00000550418 WIZO95785 1651 aa20.93■□□□□ 0.94
RBFOX1-212ENST00000550418 TNIKQ9UKE5 1360 aa20.92■□□□□ 0.94
RBFOX1-212ENST00000550418 ABCC8Q09428 1581 aa20.92■□□□□ 0.94
RBFOX1-212ENST00000550418 WDR43Q15061 677 aaKnown RBP eCLIP20.9■□□□□ 0.94
RBFOX1-212ENST00000550418 TRIM44Q96DX7 344 aaPredicted RBP20.9■□□□□ 0.94
RBFOX1-212ENST00000550418 B4GALNT3Q6L9W6 998 aa20.9■□□□□ 0.94
RBFOX1-212ENST00000550418 ERCC6Q03468 1493 aa20.9■□□□□ 0.94
RBFOX1-212ENST00000550418 KIF27Q86VH2 1401 aa20.82■□□□□ 0.92
RBFOX1-212ENST00000550418 CCER2I3L3R5 266 aa20.82■□□□□ 0.92
RBFOX1-212ENST00000550418 MTUS2Q5JR59 1369 aa20.8■□□□□ 0.92
RBFOX1-212ENST00000550418 PLPPR3Q6T4P5 718 aa20.8■□□□□ 0.92
RBFOX1-212ENST00000550418 SIN3AQ96ST3 1273 aa20.8■□□□□ 0.92
RBFOX1-212ENST00000550418 SENP3-EIF4A1A0A087X0R7 540 aa20.79■□□□□ 0.92
RBFOX1-212ENST00000550418 NAP1L5Q96NT1 182 aaPredicted RBP20.78■□□□□ 0.92
RBFOX1-212ENST00000550418 CEP164Q9UPV0 1460 aa20.78■□□□□ 0.92
RBFOX1-212ENST00000550418 SLC24A1O60721 1099 aa20.78■□□□□ 0.92
RBFOX1-212ENST00000550418 KDM2AQ9Y2K7 1162 aa20.77■□□□□ 0.92
RBFOX1-212ENST00000550418 RRP7BPQ9NSQ0 103 aa20.73■□□□□ 0.91
RBFOX1-212ENST00000550418 GOLGA6L22H0YM25 854 aa20.71■□□□□ 0.91
RBFOX1-212ENST00000550418 TIMELESSQ9UNS1 1208 aa20.68■□□□□ 0.9
RBFOX1-212ENST00000550418 TNNT2P45379 298 aaPredicted RBP20.67■□□□□ 0.9
RBFOX1-212ENST00000550418 TOP2AP11388 1531 aaKnown RBP20.66■□□□□ 0.9
RBFOX1-212ENST00000550418 CUX2O14529 1486 aa20.64■□□□□ 0.9
RBFOX1-212ENST00000550418 RGS3P49796 1198 aa20.64■□□□□ 0.89
RBFOX1-212ENST00000550418 SMARCA2P51531 1590 aa20.62■□□□□ 0.89
RBFOX1-212ENST00000550418 ATAD2BQ9ULI0 1458 aa20.6■□□□□ 0.89
RBFOX1-212ENST00000550418 CARMIL1Q5VZK9 1371 aa20.59■□□□□ 0.89
RBFOX1-212ENST00000550418 CCNB3Q8WWL7 1395 aa20.59■□□□□ 0.89
RBFOX1-212ENST00000550418 SMARCA4P51532 1647 aa20.58■□□□□ 0.89
RBFOX1-212ENST00000550418 TSPY4P0CV99 314 aa20.58■□□□□ 0.88
RBFOX1-212ENST00000550418 TSPY10P0CW01 314 aa20.58■□□□□ 0.88
RBFOX1-212ENST00000550418 STAG3Q9UJ98 1225 aa20.57■□□□□ 0.88
RBFOX1-212ENST00000550418 NCLP19338 710 aaKnown RBP20.57■□□□□ 0.88
RBFOX1-212ENST00000550418 TRHP20396 242 aaPredicted RBP20.57■□□□□ 0.88
RBFOX1-212ENST00000550418 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.56■□□□□ 0.88
RBFOX1-212ENST00000550418 MYH16Q9H6N6 1097 aa20.56■□□□□ 0.88
RBFOX1-212ENST00000550418 CHGAP10645 457 aaKnown RBP20.55■□□□□ 0.88
RBFOX1-212ENST00000550418 L1TD1Q5T7N2 865 aaKnown RBP20.55■□□□□ 0.88
RBFOX1-212ENST00000550418 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.55■□□□□ 0.88
RBFOX1-212ENST00000550418 PTMAP06454 111 aaKnown RBP20.54■□□□□ 0.88
RBFOX1-212ENST00000550418 RUSC2Q8N2Y8 1516 aa20.54■□□□□ 0.88
RBFOX1-212ENST00000550418 IPO9Q96P70 1041 aaKnown RBP20.52■□□□□ 0.88
RBFOX1-212ENST00000550418 DNTTIP2Q5QJE6 756 aaKnown RBP20.52■□□□□ 0.88
RBFOX1-212ENST00000550418 KANK4Q5T7N3 995 aaPredicted RBP20.52■□□□□ 0.88
RBFOX1-212ENST00000550418 CARD11Q9BXL7 1154 aa20.5■□□□□ 0.87
RBFOX1-212ENST00000550418 TDRD9Q8NDG6 1382 aaKnown RBP20.47■□□□□ 0.87
RBFOX1-212ENST00000550418 KCNH8Q96L42 1107 aa20.47■□□□□ 0.87
RBFOX1-212ENST00000550418 TCERG1O14776 1098 aaKnown RBP20.46■□□□□ 0.87
RBFOX1-212ENST00000550418 KNSTRNQ9Y448 316 aa20.45■□□□□ 0.86
RBFOX1-212ENST00000550418 VPS8Q8N3P4 1428 aa20.43■□□□□ 0.86
RBFOX1-212ENST00000550418 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
RBFOX1-212ENST00000550418 HSPA5P11021 654 aaKnown RBP20.41■□□□□ 0.86
RBFOX1-212ENST00000550418 SETD5Q9C0A6 1442 aa20.41■□□□□ 0.86
RBFOX1-212ENST00000550418 FTSJ3Q8IY81 847 aaKnown RBP20.41■□□□□ 0.86
RBFOX1-212ENST00000550418 PLEKHD1A6NEE1 506 aa20.4■□□□□ 0.86
RBFOX1-212ENST00000550418 RGL3Q3MIN7 710 aa20.4■□□□□ 0.86
RBFOX1-212ENST00000550418 PNNQ9H307 717 aaKnown RBP20.39■□□□□ 0.86
RBFOX1-212ENST00000550418 FANCIQ9NVI1 1328 aa20.39■□□□□ 0.85
RBFOX1-212ENST00000550418 CDCA8Q53HL2 280 aa20.38■□□□□ 0.85
RBFOX1-212ENST00000550418 RAPGEF2Q9Y4G8 1499 aa20.37■□□□□ 0.85
RBFOX1-212ENST00000550418 FRAT1Q92837 279 aaPredicted RBP20.37■□□□□ 0.85
RBFOX1-212ENST00000550418 HSP90AB1P08238 724 aaKnown RBP20.36■□□□□ 0.85
RBFOX1-212ENST00000550418 ARID4BQ4LE39 1312 aaPredicted RBP20.35■□□□□ 0.85
RBFOX1-212ENST00000550418 CFDP1Q9UEE9 299 aaPredicted RBP20.35■□□□□ 0.85
RBFOX1-212ENST00000550418 USP35Q9P2H5 1018 aa20.35■□□□□ 0.85
RBFOX1-212ENST00000550418 MSNP26038 577 aaKnown RBP20.34■□□□□ 0.85
RBFOX1-212ENST00000550418 EIF4G1Q04637 1599 aaKnown RBP20.33■□□□□ 0.85
RBFOX1-212ENST00000550418 NEUROD2Q15784 382 aa20.33■□□□□ 0.85
RBFOX1-212ENST00000550418 PPP1R15AO75807 674 aaPredicted RBP20.33■□□□□ 0.85
RBFOX1-212ENST00000550418 CFAP53Q96M91 514 aa20.33■□□□□ 0.85
RBFOX1-212ENST00000550418 RCAN3Q9UKA8 241 aa20.33■□□□□ 0.84
RBFOX1-212ENST00000550418 HSCBQ8IWL3 235 aa20.32■□□□□ 0.84
RBFOX1-212ENST00000550418 PDS5BQ9NTI5 1447 aa20.32■□□□□ 0.84
RBFOX1-212ENST00000550418 RAB3GAP2Q9H2M9 1393 aa20.31■□□□□ 0.84
RBFOX1-212ENST00000550418 CC2D1BQ5T0F9 858 aaKnown RBP20.31■□□□□ 0.84
RBFOX1-212ENST00000550418 NUDCQ9Y266 331 aa20.3■□□□□ 0.84
RBFOX1-212ENST00000550418 CASC1Q6TDU7 716 aa20.29■□□□□ 0.84
RBFOX1-212ENST00000550418 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
RBFOX1-212ENST00000550418 SPRYD3Q8NCJ5 442 aa20.27■□□□□ 0.84
RBFOX1-212ENST00000550418 SLKQ9H2G2 1235 aaPredicted RBP20.27■□□□□ 0.83
RBFOX1-212ENST00000550418 CDK11BP21127 795 aaKnown RBP20.26■□□□□ 0.83
RBFOX1-212ENST00000550418 MS4A1P11836 297 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms