RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SCAF1Q9H7N4 1312 aaKnown RBP16.75■□□□□ 0.27
COL4A6-209ENST00000545689 ANP32BQ92688 251 aaKnown RBP16.74■□□□□ 0.27
COL4A6-209ENST00000545689 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.72■□□□□ 0.27
COL4A6-209ENST00000545689 FHAD1B1AJZ9 1412 aa16.7■□□□□ 0.26
COL4A6-209ENST00000545689 HSP90AA1P07900 732 aaKnown RBP16.68■□□□□ 0.26
COL4A6-209ENST00000545689 RRP7BPQ9NSQ0 103 aa16.68■□□□□ 0.26
COL4A6-209ENST00000545689 PLEKHD1A6NEE1 506 aa16.67■□□□□ 0.26
COL4A6-209ENST00000545689 KDM2AQ9Y2K7 1162 aa16.66■□□□□ 0.26
COL4A6-209ENST00000545689 BCL11AQ9H165 835 aa16.64■□□□□ 0.25
COL4A6-209ENST00000545689 TIMELESSQ9UNS1 1208 aa16.63■□□□□ 0.25
COL4A6-209ENST00000545689 CDCA8Q53HL2 280 aa16.63■□□□□ 0.25
COL4A6-209ENST00000545689 CECR2Q9BXF3 1484 aa16.63■□□□□ 0.25
COL4A6-209ENST00000545689 SALL2Q9Y467 1007 aaPredicted RBP16.6■□□□□ 0.25
COL4A6-209ENST00000545689 CCNB3Q8WWL7 1395 aa16.6■□□□□ 0.25
COL4A6-209ENST00000545689 DDRGK1Q96HY6 314 aa16.6■□□□□ 0.25
COL4A6-209ENST00000545689 CFDP1Q9UEE9 299 aaPredicted RBP16.57■□□□□ 0.24
COL4A6-209ENST00000545689 VPS8Q8N3P4 1428 aa16.57■□□□□ 0.24
COL4A6-209ENST00000545689 HIRIP3Q9BW71 556 aaPredicted RBP16.54■□□□□ 0.24
COL4A6-209ENST00000545689 SMARCA2P51531 1590 aa16.54■□□□□ 0.24
COL4A6-209ENST00000545689 MYH16Q9H6N6 1097 aa16.54■□□□□ 0.24
COL4A6-209ENST00000545689 SOGA1O94964 1423 aa16.52■□□□□ 0.24
COL4A6-209ENST00000545689 CARMIL1Q5VZK9 1371 aa16.52■□□□□ 0.24
COL4A6-209ENST00000545689 CCDC88BA6NC98 1476 aa16.52■□□□□ 0.23
COL4A6-209ENST00000545689 MROH2BQ7Z745 1585 aa16.52■□□□□ 0.23
COL4A6-209ENST00000545689 BECN1Q14457 450 aa16.5■□□□□ 0.23
COL4A6-209ENST00000545689 CFAP53Q96M91 514 aa16.5■□□□□ 0.23
COL4A6-209ENST00000545689 CUX2O14529 1486 aa16.5■□□□□ 0.23
COL4A6-209ENST00000545689 EIF5BO60841 1220 aaKnown RBP16.49■□□□□ 0.23
COL4A6-209ENST00000545689 CARD11Q9BXL7 1154 aa16.49■□□□□ 0.23
COL4A6-209ENST00000545689 TOP2AP11388 1531 aaKnown RBP16.48■□□□□ 0.23
COL4A6-209ENST00000545689 IRX6P78412 446 aaPredicted RBP16.48■□□□□ 0.23
COL4A6-209ENST00000545689 ANP32EQ9BTT0 268 aa16.47■□□□□ 0.23
COL4A6-209ENST00000545689 KNSTRNQ9Y448 316 aa16.47■□□□□ 0.23
COL4A6-209ENST00000545689 SETD5Q9C0A6 1442 aa16.47■□□□□ 0.23
COL4A6-209ENST00000545689 ARHGAP35Q9NRY4 1499 aa16.47■□□□□ 0.23
COL4A6-209ENST00000545689 NBR1Q14596 966 aa16.46■□□□□ 0.22
COL4A6-209ENST00000545689 CCER2I3L3R5 266 aa16.45■□□□□ 0.22
COL4A6-209ENST00000545689 PPP4R2Q9NY27 417 aa16.44■□□□□ 0.22
COL4A6-209ENST00000545689 KCNH8Q96L42 1107 aa16.42■□□□□ 0.22
COL4A6-209ENST00000545689 GLIPR1L2Q4G1C9 344 aa16.41■□□□□ 0.22
COL4A6-209ENST00000545689 SIN3AQ96ST3 1273 aa16.41■□□□□ 0.22
COL4A6-209ENST00000545689 ABCC8Q09428 1581 aa16.4■□□□□ 0.22
COL4A6-209ENST00000545689 RGL3Q3MIN7 710 aa16.39■□□□□ 0.21
COL4A6-209ENST00000545689 SUPT16HQ9Y5B9 1047 aaKnown RBP16.39■□□□□ 0.21
COL4A6-209ENST00000545689 EIF4G1Q04637 1599 aaKnown RBP16.38■□□□□ 0.21
COL4A6-209ENST00000545689 PPP1R15AO75807 674 aaPredicted RBP16.38■□□□□ 0.21
COL4A6-209ENST00000545689 ERCC6Q03468 1493 aa16.37■□□□□ 0.21
COL4A6-209ENST00000545689 FMN1Q68DA7 1419 aa16.37■□□□□ 0.21
COL4A6-209ENST00000545689 PPM1GO15355 546 aaPredicted RBP16.36■□□□□ 0.21
COL4A6-209ENST00000545689 CHMP4BQ9H444 224 aaKnown RBP16.34■□□□□ 0.21
COL4A6-209ENST00000545689 GOLGA6L22H0YM25 854 aa16.33■□□□□ 0.21
COL4A6-209ENST00000545689 MS4A1P11836 297 aa16.33■□□□□ 0.2
COL4A6-209ENST00000545689 NUDCQ9Y266 331 aa16.33■□□□□ 0.2
COL4A6-209ENST00000545689 KANK1Q14678 1352 aa16.32■□□□□ 0.2
COL4A6-209ENST00000545689 TMF1P82094 1093 aa16.31■□□□□ 0.2
COL4A6-209ENST00000545689 ERICH6BQ5W0A0 696 aa16.31■□□□□ 0.2
COL4A6-209ENST00000545689 WIZO95785 1651 aa16.3■□□□□ 0.2
COL4A6-209ENST00000545689 CASC1Q6TDU7 716 aa16.3■□□□□ 0.2
COL4A6-209ENST00000545689 MAPK8IP3Q9UPT6 1336 aa16.29■□□□□ 0.2
COL4A6-209ENST00000545689 PNNQ9H307 717 aaKnown RBP16.29■□□□□ 0.2
COL4A6-209ENST00000545689 NCLP19338 710 aaKnown RBP16.29■□□□□ 0.2
COL4A6-209ENST00000545689 FTSJ3Q8IY81 847 aaKnown RBP16.29■□□□□ 0.2
COL4A6-209ENST00000545689 PDS5BQ9NTI5 1447 aa16.28■□□□□ 0.2
COL4A6-209ENST00000545689 CARMIL2Q6F5E8 1435 aa16.27■□□□□ 0.2
COL4A6-209ENST00000545689 RAB3GAP2Q9H2M9 1393 aa16.26■□□□□ 0.19
COL4A6-209ENST00000545689 PLPPR3Q6T4P5 718 aa16.25■□□□□ 0.19
COL4A6-209ENST00000545689 RAPGEF2Q9Y4G8 1499 aa16.24■□□□□ 0.19
COL4A6-209ENST00000545689 HSPA5P11021 654 aaKnown RBP16.23■□□□□ 0.19
COL4A6-209ENST00000545689 KANK4Q5T7N3 995 aaPredicted RBP16.23■□□□□ 0.19
COL4A6-209ENST00000545689 DCAF11Q8TEB1 546 aa16.22■□□□□ 0.19
COL4A6-209ENST00000545689 TRIM44Q96DX7 344 aaPredicted RBP16.22■□□□□ 0.19
COL4A6-209ENST00000545689 NOP58Q9Y2X3 529 aaKnown RBP16.22■□□□□ 0.19
COL4A6-209ENST00000545689 SMARCA4P51532 1647 aa16.2■□□□□ 0.18
COL4A6-209ENST00000545689 KTN1Q86UP2 1357 aaKnown RBP16.2■□□□□ 0.18
COL4A6-209ENST00000545689 POGKQ9P215 609 aa16.19■□□□□ 0.18
COL4A6-209ENST00000545689 CC2D1BQ5T0F9 858 aaKnown RBP16.18■□□□□ 0.18
COL4A6-209ENST00000545689 ANKRD30AQ9BXX3 1397 aa16.18■□□□□ 0.18
COL4A6-209ENST00000545689 RALBP1Q15311 655 aa16.17■□□□□ 0.18
COL4A6-209ENST00000545689 ARXQ96QS3 562 aa16.17■□□□□ 0.18
COL4A6-209ENST00000545689 C14orf37Q86TY3 774 aa16.15■□□□□ 0.18
COL4A6-209ENST00000545689 PKD2Q13563 968 aa16.14■□□□□ 0.17
COL4A6-209ENST00000545689 MPHOSPH9Q99550 1183 aa16.14■□□□□ 0.17
COL4A6-209ENST00000545689 CFAP44Q96MT7 982 aa16.14■□□□□ 0.17
COL4A6-209ENST00000545689 CADPSQ9ULU8 1353 aa16.14■□□□□ 0.17
COL4A6-209ENST00000545689 CCDC18Q5T9S5 1454 aa16.13■□□□□ 0.17
COL4A6-209ENST00000545689 HDGFP51858 240 aaKnown RBP16.12■□□□□ 0.17
COL4A6-209ENST00000545689 ARID4BQ4LE39 1312 aaPredicted RBP16.12■□□□□ 0.17
COL4A6-209ENST00000545689 ATAD2BQ9ULI0 1458 aa16.12■□□□□ 0.17
COL4A6-209ENST00000545689 ROCK2O75116 1388 aaKnown RBP16.11■□□□□ 0.17
COL4A6-209ENST00000545689 NEUROD2Q15784 382 aa16.11■□□□□ 0.17
COL4A6-209ENST00000545689 FRAT1Q92837 279 aaPredicted RBP16.11■□□□□ 0.17
COL4A6-209ENST00000545689 HAP1P54257 671 aaPredicted RBP16.11■□□□□ 0.17
COL4A6-209ENST00000545689 B4GALNT3Q6L9W6 998 aa16.1■□□□□ 0.17
COL4A6-209ENST00000545689 EIF3AQ14152 1382 aaKnown RBP16.1■□□□□ 0.17
COL4A6-209ENST00000545689 RGS3P49796 1198 aa16.1■□□□□ 0.17
COL4A6-209ENST00000545689 ZBTB7CA1YPR0 619 aa16.09■□□□□ 0.17
COL4A6-209ENST00000545689 RSPH4AQ5TD94 716 aa16.09■□□□□ 0.17
COL4A6-209ENST00000545689 MORC1Q86VD1 984 aa16.08■□□□□ 0.17
COL4A6-209ENST00000545689 LAS1LQ9Y4W2 734 aaKnown RBP16.08■□□□□ 0.16
COL4A6-209ENST00000545689 NUP155O75694 1391 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms