RNA–Protein interactions for RNA: ENST00000544484.5

CHD4-211, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2 BASIC

Gene CHD4, Length 6,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-211ENST00000544484 PLEKHG5O94827 1062 aa17.2■□□□□ 0.34
CHD4-211ENST00000544484 SENP3-EIF4A1A0A087X0R7 540 aa17.19■□□□□ 0.34
CHD4-211ENST00000544484 EIF4G2P78344 907 aaKnown RBP eCLIP17.18■□□□□ 0.34
CHD4-211ENST00000544484 PLEKHD1A6NEE1 506 aa17.18■□□□□ 0.34
CHD4-211ENST00000544484 WRNQ14191 1432 aaPredicted RBP eCLIP17.18■□□□□ 0.349e-6■■■■■ 50.1
CHD4-211ENST00000544484 GOLGA3Q08378 1498 aa17.17■□□□□ 0.34
CHD4-211ENST00000544484 SCAF1Q9H7N4 1312 aaKnown RBP17.17■□□□□ 0.34
CHD4-211ENST00000544484 UPF2Q9HAU5 1272 aaKnown RBP17.15■□□□□ 0.34
CHD4-211ENST00000544484 BAZ1BQ9UIG0 1483 aaKnown RBP17.13■□□□□ 0.33
CHD4-211ENST00000544484 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.12■□□□□ 0.33
CHD4-211ENST00000544484 EEA1Q15075 1411 aa17.1■□□□□ 0.33
CHD4-211ENST00000544484 CFDP1Q9UEE9 299 aaPredicted RBP17.1■□□□□ 0.33
CHD4-211ENST00000544484 ZBTB7CA1YPR0 619 aa17.1■□□□□ 0.33
CHD4-211ENST00000544484 PPP1R15AO75807 674 aaPredicted RBP17.08■□□□□ 0.33
CHD4-211ENST00000544484 KIF27Q86VH2 1401 aa17.06■□□□□ 0.32
CHD4-211ENST00000544484 A0A0G2JS52 829 aa17.06■□□□□ 0.32
CHD4-211ENST00000544484 C14orf37Q86TY3 774 aa17.06■□□□□ 0.32
CHD4-211ENST00000544484 NBR1Q14596 966 aa17.04■□□□□ 0.32
CHD4-211ENST00000544484 SIN3AQ96ST3 1273 aa17.03■□□□□ 0.32
CHD4-211ENST00000544484 ARXQ96QS3 562 aa17.01■□□□□ 0.31
CHD4-211ENST00000544484 TNIKQ9UKE5 1360 aa17.01■□□□□ 0.31
CHD4-211ENST00000544484 NACADO15069 1562 aa17.01■□□□□ 0.31
CHD4-211ENST00000544484 ANP32BQ92688 251 aaKnown RBP17■□□□□ 0.31
CHD4-211ENST00000544484 CEP164Q9UPV0 1460 aa16.99■□□□□ 0.31
CHD4-211ENST00000544484 ARID4BQ4LE39 1312 aaPredicted RBP16.98■□□□□ 0.31
CHD4-211ENST00000544484 CARD11Q9BXL7 1154 aa16.98■□□□□ 0.31
CHD4-211ENST00000544484 CECR2Q9BXF3 1484 aa16.98■□□□□ 0.31
CHD4-211ENST00000544484 PPM1GO15355 546 aaPredicted RBP16.96■□□□□ 0.31
CHD4-211ENST00000544484 KNSTRNQ9Y448 316 aa16.93■□□□□ 0.3
CHD4-211ENST00000544484 MYH16Q9H6N6 1097 aa16.93■□□□□ 0.3
CHD4-211ENST00000544484 EIF5BO60841 1220 aaKnown RBP16.92■□□□□ 0.3
CHD4-211ENST00000544484 NEUROD2Q15784 382 aa16.91■□□□□ 0.3
CHD4-211ENST00000544484 ERCC6Q03468 1493 aa16.91■□□□□ 0.3
CHD4-211ENST00000544484 SUPT16HQ9Y5B9 1047 aaKnown RBP16.89■□□□□ 0.29
CHD4-211ENST00000544484 SOGA1O94964 1423 aa16.89■□□□□ 0.29
CHD4-211ENST00000544484 BAZ1AQ9NRL2 1556 aaPredicted RBP16.87■□□□□ 0.29
CHD4-211ENST00000544484 TNNT2P45379 298 aaPredicted RBP16.87■□□□□ 0.29
CHD4-211ENST00000544484 CFAP53Q96M91 514 aa16.87■□□□□ 0.29
CHD4-211ENST00000544484 CDCA8Q53HL2 280 aa16.85■□□□□ 0.29
CHD4-211ENST00000544484 CARMIL1Q5VZK9 1371 aa16.84■□□□□ 0.29
CHD4-211ENST00000544484 CUX2O14529 1486 aa16.84■□□□□ 0.29
CHD4-211ENST00000544484 CCNB3Q8WWL7 1395 aa16.83■□□□□ 0.28
CHD4-211ENST00000544484 EIF4G1Q04637 1599 aaKnown RBP16.83■□□□□ 0.28
CHD4-211ENST00000544484 CC2D1BQ5T0F9 858 aaKnown RBP16.82■□□□□ 0.28
CHD4-211ENST00000544484 LAS1LQ9Y4W2 734 aaKnown RBP16.82■□□□□ 0.28
CHD4-211ENST00000544484 POGKQ9P215 609 aa16.82■□□□□ 0.28
CHD4-211ENST00000544484 HAP1P54257 671 aaPredicted RBP16.81■□□□□ 0.28
CHD4-211ENST00000544484 LMOD2Q6P5Q4 547 aa16.8■□□□□ 0.28
CHD4-211ENST00000544484 DCAF11Q8TEB1 546 aa16.8■□□□□ 0.28
CHD4-211ENST00000544484 MLECQ14165 292 aa16.76■□□□□ 0.27
CHD4-211ENST00000544484 FTSJ3Q8IY81 847 aaKnown RBP16.76■□□□□ 0.27
CHD4-211ENST00000544484 FHAD1B1AJZ9 1412 aa16.76■□□□□ 0.27
CHD4-211ENST00000544484 MAPK8IP3Q9UPT6 1336 aa16.75■□□□□ 0.27
CHD4-211ENST00000544484 FRAT1Q92837 279 aaPredicted RBP16.74■□□□□ 0.27
CHD4-211ENST00000544484 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
CHD4-211ENST00000544484 U2SURPO15042 1029 aaKnown RBP16.73■□□□□ 0.27
CHD4-211ENST00000544484 FOXD1Q16676 465 aa16.73■□□□□ 0.27
CHD4-211ENST00000544484 ABCC8Q09428 1581 aa16.72■□□□□ 0.27
CHD4-211ENST00000544484 NUDCQ9Y266 331 aa16.71■□□□□ 0.27
CHD4-211ENST00000544484 SAFB2Q14151 953 aaKnown RBP eCLIP16.71■□□□□ 0.27
CHD4-211ENST00000544484 BECN1Q14457 450 aa16.7■□□□□ 0.26
CHD4-211ENST00000544484 RGS3P49796 1198 aa16.7■□□□□ 0.26
CHD4-211ENST00000544484 MROH2BQ7Z745 1585 aa16.7■□□□□ 0.26
CHD4-211ENST00000544484 CCDC88BA6NC98 1476 aa16.69■□□□□ 0.26
CHD4-211ENST00000544484 SOX12O15370 315 aa16.69■□□□□ 0.26
CHD4-211ENST00000544484 DDRGK1Q96HY6 314 aa16.67■□□□□ 0.26
CHD4-211ENST00000544484 TMF1P82094 1093 aa16.67■□□□□ 0.26
CHD4-211ENST00000544484 GGT6Q6P531 493 aa16.67■□□□□ 0.26
CHD4-211ENST00000544484 TPRNQ4KMQ1 711 aa16.66■□□□□ 0.26
CHD4-211ENST00000544484 TDRD9Q8NDG6 1382 aaKnown RBP16.65■□□□□ 0.26
CHD4-211ENST00000544484 PKD2Q13563 968 aa16.65■□□□□ 0.26
CHD4-211ENST00000544484 TRHP20396 242 aaPredicted RBP16.65■□□□□ 0.26
CHD4-211ENST00000544484 B4GALNT3Q6L9W6 998 aa16.64■□□□□ 0.25
CHD4-211ENST00000544484 SRPK2P78362 688 aaKnown RBP16.64■□□□□ 0.25
CHD4-211ENST00000544484 HSPA5P11021 654 aaKnown RBP16.63■□□□□ 0.25
CHD4-211ENST00000544484 NCLP19338 710 aaKnown RBP16.63■□□□□ 0.25
CHD4-211ENST00000544484 VPS8Q8N3P4 1428 aa16.63■□□□□ 0.25
CHD4-211ENST00000544484 PPP4R2Q9NY27 417 aa16.62■□□□□ 0.25
CHD4-211ENST00000544484 SETD5Q9C0A6 1442 aa16.62■□□□□ 0.25
CHD4-211ENST00000544484 KANK1Q14678 1352 aa16.62■□□□□ 0.25
CHD4-211ENST00000544484 STK26Q9P289 416 aa16.61■□□□□ 0.25
CHD4-211ENST00000544484 ARHGAP35Q9NRY4 1499 aa16.6■□□□□ 0.25
CHD4-211ENST00000544484 GOLGA6L22H0YM25 854 aa16.57■□□□□ 0.24
CHD4-211ENST00000544484 CASC1Q6TDU7 716 aa16.57■□□□□ 0.24
CHD4-211ENST00000544484 MORC1Q86VD1 984 aa16.57■□□□□ 0.24
CHD4-211ENST00000544484 TAOK2Q9UL54 1235 aa16.56■□□□□ 0.24
CHD4-211ENST00000544484 TIMELESSQ9UNS1 1208 aa16.54■□□□□ 0.24
CHD4-211ENST00000544484 MPHOSPH9Q99550 1183 aa16.53■□□□□ 0.24
CHD4-211ENST00000544484 RAB3GAP2Q9H2M9 1393 aa16.53■□□□□ 0.24
CHD4-211ENST00000544484 OS9Q13438 667 aaPredicted RBP16.53■□□□□ 0.24
CHD4-211ENST00000544484 TRIM44Q96DX7 344 aaPredicted RBP16.52■□□□□ 0.24
CHD4-211ENST00000544484 CARMIL2Q6F5E8 1435 aa16.51■□□□□ 0.23
CHD4-211ENST00000544484 NUP155O75694 1391 aa16.51■□□□□ 0.23
CHD4-211ENST00000544484 PDS5BQ9NTI5 1447 aa16.5■□□□□ 0.23
CHD4-211ENST00000544484 NPHP1O15259 732 aa16.49■□□□□ 0.23
CHD4-211ENST00000544484 PNNQ9H307 717 aaKnown RBP16.49■□□□□ 0.23
CHD4-211ENST00000544484 HDGFP51858 240 aaKnown RBP16.48■□□□□ 0.23
CHD4-211ENST00000544484 HNRNPMP52272 730 aaKnown RBP eCLIP16.48■□□□□ 0.233e-7■■■■■ 27.3
CHD4-211ENST00000544484 SMARCA2P51531 1590 aa16.47■□□□□ 0.23
CHD4-211ENST00000544484 EFCAB2Q5VUJ9 269 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms