RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 CCDC61Q9Y6R9 512 aa12.09□□□□□ -0.47
VPS13A-213ENST00000539950 POTEIP0CG38 1075 aa12.07□□□□□ -0.48
VPS13A-213ENST00000539950 KLHL34Q8N239 644 aa12.01□□□□□ -0.49
VPS13A-213ENST00000539950 MS4A3Q96HJ5 214 aa12.01□□□□□ -0.49
VPS13A-213ENST00000539950 KIF12Q96FN5 646 aa12□□□□□ -0.49
VPS13A-213ENST00000539950 DCBLD2Q96PD2 775 aa12□□□□□ -0.49
VPS13A-213ENST00000539950 IFNLR1Q8IU57 520 aaPredicted RBP11.98□□□□□ -0.49
VPS13A-213ENST00000539950 FAM212AQ96EL1 285 aa11.97□□□□□ -0.49
VPS13A-213ENST00000539950 MAP3K13O43283 966 aa11.95□□□□□ -0.5
VPS13A-213ENST00000539950 DCAF8Q5TAQ9 597 aa11.92□□□□□ -0.5
VPS13A-213ENST00000539950 TRPC6Q9Y210 931 aa11.88□□□□□ -0.51
VPS13A-213ENST00000539950 PELP1Q8IZL8 1130 aaKnown RBP11.85□□□□□ -0.51
VPS13A-213ENST00000539950 SPOCK2Q92563 424 aa11.85□□□□□ -0.51
VPS13A-213ENST00000539950 PCDHB13Q9Y5F0 798 aa11.85□□□□□ -0.51
VPS13A-213ENST00000539950 ATMINO43313 823 aaPredicted RBP11.84□□□□□ -0.51
VPS13A-213ENST00000539950 PYGBP11216 843 aa11.84□□□□□ -0.51
VPS13A-213ENST00000539950 ASTLQ6HA08 431 aaPredicted RBP11.84□□□□□ -0.51
VPS13A-213ENST00000539950 GSE1Q14687 1217 aa11.82□□□□□ -0.52
VPS13A-213ENST00000539950 SGIP1Q9BQI5 828 aa11.82□□□□□ -0.52
VPS13A-213ENST00000539950 LHX8Q68G74 356 aa11.81□□□□□ -0.52
VPS13A-213ENST00000539950 IFNL1Q8IU54 200 aa11.81□□□□□ -0.52
VPS13A-213ENST00000539950 BMP2KQ9NSY1 1161 aaPredicted RBP11.8□□□□□ -0.52
VPS13A-213ENST00000539950 ATN1P54259 1190 aaPredicted RBP11.79□□□□□ -0.52
VPS13A-213ENST00000539950 TIE1P35590 1138 aa11.77□□□□□ -0.53
VPS13A-213ENST00000539950 CIZ1Q9ULV3 898 aaPredicted RBP11.75□□□□□ -0.53
VPS13A-213ENST00000539950 TTLL13PA6NNM8 815 aa11.74□□□□□ -0.53
VPS13A-213ENST00000539950 PCDHB8Q9UN66 801 aa11.73□□□□□ -0.53
VPS13A-213ENST00000539950 METRNQ9UJH8 293 aa11.71□□□□□ -0.53
VPS13A-213ENST00000539950 CHRM1P11229 460 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-213ENST00000539950 SLC39A7Q92504 469 aa11.7□□□□□ -0.54
VPS13A-213ENST00000539950 POTEB2H3BUK9 544 aa11.68□□□□□ -0.54
VPS13A-213ENST00000539950 C7P10643 843 aa11.68□□□□□ -0.54
VPS13A-213ENST00000539950 TMEM106CQ9BVX2 250 aa11.67□□□□□ -0.54
VPS13A-213ENST00000539950 TRIM35Q9UPQ4 493 aa11.67□□□□□ -0.54
VPS13A-213ENST00000539950 ZNF467Q7Z7K2 595 aaPredicted RBP11.64□□□□□ -0.55
VPS13A-213ENST00000539950 POTEFA5A3E0 1075 aa11.62□□□□□ -0.55
VPS13A-213ENST00000539950 POTEJP0CG39 1038 aa11.58□□□□□ -0.56
VPS13A-213ENST00000539950 COLQQ9Y215 455 aaPredicted RBP11.58□□□□□ -0.56
VPS13A-213ENST00000539950 IER5LQ5T953 404 aa11.56□□□□□ -0.56
VPS13A-213ENST00000539950 OTUD5Q96G74 571 aa11.56□□□□□ -0.56
VPS13A-213ENST00000539950 PSEN1P49768 467 aa11.55□□□□□ -0.56
VPS13A-213ENST00000539950 TRIM41Q8WV44 630 aa11.55□□□□□ -0.56
VPS13A-213ENST00000539950 SEC24BO95487 1268 aa11.54□□□□□ -0.56
VPS13A-213ENST00000539950 PDAP1Q13442 181 aaKnown RBP11.52□□□□□ -0.57
VPS13A-213ENST00000539950 RNF25Q96BH1 459 aaPredicted RBP11.5□□□□□ -0.57
VPS13A-213ENST00000539950 IRX5P78411 483 aaPredicted RBP11.49□□□□□ -0.57
VPS13A-213ENST00000539950 PLCG2P16885 1265 aa11.46□□□□□ -0.57
VPS13A-213ENST00000539950 RIOK3O14730 519 aaKnown RBP11.44□□□□□ -0.58
VPS13A-213ENST00000539950 GOLGA2Q08379 1002 aa11.44□□□□□ -0.58
VPS13A-213ENST00000539950 PKD2Q13563 968 aa11.44□□□□□ -0.58
VPS13A-213ENST00000539950 MAMSTRQ6ZN01 415 aa11.43□□□□□ -0.58
VPS13A-213ENST00000539950 OCEL1Q9H607 264 aa11.43□□□□□ -0.58
VPS13A-213ENST00000539950 MKRN3Q13064 507 aaKnown RBP11.42□□□□□ -0.58
VPS13A-213ENST00000539950 CABP2Q9NPB3 220 aa11.42□□□□□ -0.58
VPS13A-213ENST00000539950 PLSCR2Q9NRY7 297 aa11.42□□□□□ -0.58
VPS13A-213ENST00000539950 ECM2O94769 699 aaPredicted RBP11.39□□□□□ -0.59
VPS13A-213ENST00000539950 SCUBE2Q9NQ36 999 aa11.39□□□□□ -0.59
VPS13A-213ENST00000539950 PDCD7Q8N8D1 485 aaKnown RBP11.38□□□□□ -0.59
VPS13A-213ENST00000539950 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-213ENST00000539950 VGFO15240 615 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-213ENST00000539950 ZFP91Q96JP5 570 aaPredicted RBP11.36□□□□□ -0.59
VPS13A-213ENST00000539950 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.36□□□□□ -0.593e-9■■■□□ 17.3
VPS13A-213ENST00000539950 ILDR1Q86SU0 546 aaPredicted RBP11.33□□□□□ -0.6
VPS13A-213ENST00000539950 EFCAB3Q8N7B9 438 aa11.33□□□□□ -0.6
VPS13A-213ENST00000539950 RGL2O15211 777 aa11.32□□□□□ -0.6
VPS13A-213ENST00000539950 DPY19L2Q6NUT2 758 aa11.29□□□□□ -0.6
VPS13A-213ENST00000539950 SLAIN1Q8ND83 568 aa11.25□□□□□ -0.61
VPS13A-213ENST00000539950 BCL11BQ9C0K0 894 aaPredicted RBP11.25□□□□□ -0.61
VPS13A-213ENST00000539950 TAOK2Q9UL54 1235 aa11.25□□□□□ -0.61
VPS13A-213ENST00000539950 L3MBTL3Q96JM7 780 aaPredicted RBP11.23□□□□□ -0.61
VPS13A-213ENST00000539950 STK24Q9Y6E0 443 aa11.23□□□□□ -0.61
VPS13A-213ENST00000539950 STK25O00506 426 aa11.22□□□□□ -0.61
VPS13A-213ENST00000539950 SOX12O15370 315 aa11.21□□□□□ -0.61
VPS13A-213ENST00000539950 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.21□□□□□ -0.61
VPS13A-213ENST00000539950 PHF8Q9UPP1 1060 aa11.19□□□□□ -0.62
VPS13A-213ENST00000539950 C3orf67Q6ZVT6 689 aa11.18□□□□□ -0.62
VPS13A-213ENST00000539950 MS4A4AQ96JQ5 239 aa11.18□□□□□ -0.62
VPS13A-213ENST00000539950 LCE2DQ5TA82 110 aaPredicted RBP11.17□□□□□ -0.62
VPS13A-213ENST00000539950 FAM163AQ96GL9 167 aaPredicted RBP11.17□□□□□ -0.62
VPS13A-213ENST00000539950 BOLA1Q9Y3E2 137 aa11.17□□□□□ -0.62
VPS13A-213ENST00000539950 G3V3G9 751 aa11.12□□□□□ -0.63
VPS13A-213ENST00000539950 FBXO22Q8NEZ5 403 aa11.12□□□□□ -0.63
VPS13A-213ENST00000539950 TMEM121BQ9BXQ6 578 aaPredicted RBP11.12□□□□□ -0.63
VPS13A-213ENST00000539950 MFRPQ9BY79 579 aa11.12□□□□□ -0.63
VPS13A-213ENST00000539950 NLRP6P59044 892 aa11.1□□□□□ -0.63
VPS13A-213ENST00000539950 POTEMA6NI47 508 aa11.09□□□□□ -0.63
VPS13A-213ENST00000539950 MICALL2Q8IY33 904 aa11.09□□□□□ -0.63
VPS13A-213ENST00000539950 POTEGQ6S5H5 508 aa11.08□□□□□ -0.64
VPS13A-213ENST00000539950 HS6ST3Q8IZP7 471 aa11.06□□□□□ -0.64
VPS13A-213ENST00000539950 ST18O60284 1047 aa11.05□□□□□ -0.64
VPS13A-213ENST00000539950 CHGAP10645 457 aaKnown RBP11.04□□□□□ -0.64
VPS13A-213ENST00000539950 SNPHO15079 494 aa11.01□□□□□ -0.65
VPS13A-213ENST00000539950 TMEM92Q6UXU6 159 aa11.01□□□□□ -0.65
VPS13A-213ENST00000539950 PPP1R37O75864 691 aa10.96□□□□□ -0.65
VPS13A-213ENST00000539950 NKX1-1Q15270 411 aaPredicted RBP10.95□□□□□ -0.66
VPS13A-213ENST00000539950 HOXB3P14651 431 aaPredicted RBP10.94□□□□□ -0.66
VPS13A-213ENST00000539950 DCAF8L2P0C7V8 631 aa10.92□□□□□ -0.66
VPS13A-213ENST00000539950 DNAJC5Q9H3Z4 198 aa10.92□□□□□ -0.66
VPS13A-213ENST00000539950 MARVELD3Q96A59 401 aa10.91□□□□□ -0.66
VPS13A-213ENST00000539950 DOK7Q18PE1 504 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms