RNA–Protein interactions for RNA: ENST00000539197.5

CCDC7-209, Transcript of coiled-coil domain containing 7, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC7, Length 581 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC7-209ENST00000539197 ZBTB47Q9UFB7 747 aaPredicted RBP18.43■□□□□ 0.54
CCDC7-209ENST00000539197 MS4A3Q96HJ5 214 aa18.41■□□□□ 0.54
CCDC7-209ENST00000539197 NUBP1P53384 320 aa18.37■□□□□ 0.53
CCDC7-209ENST00000539197 KIF12Q96FN5 646 aa18.32■□□□□ 0.52
CCDC7-209ENST00000539197 LHX8Q68G74 356 aa18.3■□□□□ 0.52
CCDC7-209ENST00000539197 VASPP50552 380 aaPredicted RBP18.29■□□□□ 0.52
CCDC7-209ENST00000539197 MAP3K13O43283 966 aa18.26■□□□□ 0.51
CCDC7-209ENST00000539197 PELP1Q8IZL8 1130 aaKnown RBP18.25■□□□□ 0.51
CCDC7-209ENST00000539197 TRPC6Q9Y210 931 aa18.22■□□□□ 0.51
CCDC7-209ENST00000539197 ATMINO43313 823 aaPredicted RBP18.16■□□□□ 0.5
CCDC7-209ENST00000539197 FAM212AQ96EL1 285 aa18.16■□□□□ 0.5
CCDC7-209ENST00000539197 ASTLQ6HA08 431 aaPredicted RBP18.15■□□□□ 0.5
CCDC7-209ENST00000539197 KLHL34Q8N239 644 aa18.14■□□□□ 0.49
CCDC7-209ENST00000539197 DCAF8Q5TAQ9 597 aa18.09■□□□□ 0.49
CCDC7-209ENST00000539197 ATN1P54259 1190 aaPredicted RBP18.08■□□□□ 0.48
CCDC7-209ENST00000539197 BMP2KQ9NSY1 1161 aaPredicted RBP18.08■□□□□ 0.48
CCDC7-209ENST00000539197 POTEB2H3BUK9 544 aa18.07■□□□□ 0.48
CCDC7-209ENST00000539197 PCDHB13Q9Y5F0 798 aa18.07■□□□□ 0.48
CCDC7-209ENST00000539197 IFNLR1Q8IU57 520 aaPredicted RBP18.05■□□□□ 0.48
CCDC7-209ENST00000539197 SGIP1Q9BQI5 828 aa18.03■□□□□ 0.48
CCDC7-209ENST00000539197 PYGBP11216 843 aa18.02■□□□□ 0.48
CCDC7-209ENST00000539197 IFNL1Q8IU54 200 aa18.02■□□□□ 0.48
CCDC7-209ENST00000539197 METRNQ9UJH8 293 aa18■□□□□ 0.47
CCDC7-209ENST00000539197 SLC39A7Q92504 469 aa17.98■□□□□ 0.47
CCDC7-209ENST00000539197 TIE1P35590 1138 aa17.97■□□□□ 0.47
CCDC7-209ENST00000539197 C7P10643 843 aa17.96■□□□□ 0.47
CCDC7-209ENST00000539197 TTLL13PA6NNM8 815 aa17.95■□□□□ 0.46
CCDC7-209ENST00000539197 GSE1Q14687 1217 aa17.88■□□□□ 0.45
CCDC7-209ENST00000539197 OTUD5Q96G74 571 aa17.88■□□□□ 0.45
CCDC7-209ENST00000539197 POTEFA5A3E0 1075 aa17.87■□□□□ 0.45
CCDC7-209ENST00000539197 PCDHB8Q9UN66 801 aa17.87■□□□□ 0.45
CCDC7-209ENST00000539197 POTEJP0CG39 1038 aa17.86■□□□□ 0.45
CCDC7-209ENST00000539197 SPOCK2Q92563 424 aa17.86■□□□□ 0.45
CCDC7-209ENST00000539197 TRIM35Q9UPQ4 493 aa17.84■□□□□ 0.45
CCDC7-209ENST00000539197 TMEM106CQ9BVX2 250 aa17.83■□□□□ 0.44
CCDC7-209ENST00000539197 COLQQ9Y215 455 aaPredicted RBP17.78■□□□□ 0.44
CCDC7-209ENST00000539197 CIZ1Q9ULV3 898 aaPredicted RBP17.77■□□□□ 0.44
CCDC7-209ENST00000539197 SEC24BO95487 1268 aa17.69■□□□□ 0.42
CCDC7-209ENST00000539197 CHRM1P11229 460 aaPredicted RBP17.69■□□□□ 0.42
CCDC7-209ENST00000539197 IER5LQ5T953 404 aa17.69■□□□□ 0.42
CCDC7-209ENST00000539197 MAMSTRQ6ZN01 415 aa17.67■□□□□ 0.42
CCDC7-209ENST00000539197 ZNF467Q7Z7K2 595 aaPredicted RBP17.65■□□□□ 0.42
CCDC7-209ENST00000539197 SCUBE2Q9NQ36 999 aa17.58■□□□□ 0.4
CCDC7-209ENST00000539197 IRX5P78411 483 aaPredicted RBP17.56■□□□□ 0.4
CCDC7-209ENST00000539197 PSEN1P49768 467 aa17.55■□□□□ 0.4
CCDC7-209ENST00000539197 PLCG2P16885 1265 aa17.52■□□□□ 0.4
CCDC7-209ENST00000539197 PDAP1Q13442 181 aaKnown RBP17.46■□□□□ 0.39
CCDC7-209ENST00000539197 TRIM41Q8WV44 630 aa17.46■□□□□ 0.39
CCDC7-209ENST00000539197 GOLGA2Q08379 1002 aa17.45■□□□□ 0.38
CCDC7-209ENST00000539197 OCEL1Q9H607 264 aa17.44■□□□□ 0.38
CCDC7-209ENST00000539197 MKRN3Q13064 507 aaKnown RBP17.39■□□□□ 0.37
CCDC7-209ENST00000539197 RNF25Q96BH1 459 aaPredicted RBP17.38■□□□□ 0.37
CCDC7-209ENST00000539197 PDCD7Q8N8D1 485 aaKnown RBP17.37■□□□□ 0.37
CCDC7-209ENST00000539197 CABP2Q9NPB3 220 aa17.37■□□□□ 0.37
CCDC7-209ENST00000539197 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.32■□□□□ 0.36
CCDC7-209ENST00000539197 LCE2DQ5TA82 110 aaPredicted RBP17.3■□□□□ 0.36
CCDC7-209ENST00000539197 SLAIN1Q8ND83 568 aa17.28■□□□□ 0.36
CCDC7-209ENST00000539197 FAM163AQ96GL9 167 aaPredicted RBP17.28■□□□□ 0.36
CCDC7-209ENST00000539197 DPY19L2Q6NUT2 758 aa17.27■□□□□ 0.36
CCDC7-209ENST00000539197 RIOK3O14730 519 aaKnown RBP17.25■□□□□ 0.35
CCDC7-209ENST00000539197 ILDR1Q86SU0 546 aaPredicted RBP17.23■□□□□ 0.35
CCDC7-209ENST00000539197 POTEMA6NI47 508 aa17.22■□□□□ 0.35
CCDC7-209ENST00000539197 EFCAB3Q8N7B9 438 aa17.21■□□□□ 0.35
CCDC7-209ENST00000539197 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.2■□□□□ 0.34
CCDC7-209ENST00000539197 POTEGQ6S5H5 508 aa17.2■□□□□ 0.34
CCDC7-209ENST00000539197 ZFP91Q96JP5 570 aaPredicted RBP17.2■□□□□ 0.34
CCDC7-209ENST00000539197 L3MBTL3Q96JM7 780 aaPredicted RBP17.18■□□□□ 0.34
CCDC7-209ENST00000539197 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.17■□□□□ 0.34
CCDC7-209ENST00000539197 PKD2Q13563 968 aa17.16■□□□□ 0.34
CCDC7-209ENST00000539197 VGFO15240 615 aaPredicted RBP17.13■□□□□ 0.33
CCDC7-209ENST00000539197 ECM2O94769 699 aaPredicted RBP17.12■□□□□ 0.33
CCDC7-209ENST00000539197 C3orf67Q6ZVT6 689 aa17.1■□□□□ 0.33
CCDC7-209ENST00000539197 RGL2O15211 777 aa17.05■□□□□ 0.32
CCDC7-209ENST00000539197 G3V3G9 751 aa17.03■□□□□ 0.32
CCDC7-209ENST00000539197 ST18O60284 1047 aa17.03■□□□□ 0.32
CCDC7-209ENST00000539197 TAOK2Q9UL54 1235 aa17.03■□□□□ 0.32
CCDC7-209ENST00000539197 BOLA1Q9Y3E2 137 aa17.03■□□□□ 0.32
CCDC7-209ENST00000539197 BCL11BQ9C0K0 894 aaPredicted RBP17.02■□□□□ 0.32
CCDC7-209ENST00000539197 PHF8Q9UPP1 1060 aa17■□□□□ 0.31
CCDC7-209ENST00000539197 SNPHO15079 494 aa16.99■□□□□ 0.31
CCDC7-209ENST00000539197 MS4A4AQ96JQ5 239 aa16.99■□□□□ 0.31
CCDC7-209ENST00000539197 STK24Q9Y6E0 443 aa16.97■□□□□ 0.31
CCDC7-209ENST00000539197 SOX12O15370 315 aa16.96■□□□□ 0.31
CCDC7-209ENST00000539197 PCDH10Q9P2E7 1040 aa16.95■□□□□ 0.3
CCDC7-209ENST00000539197 STK25O00506 426 aa16.92■□□□□ 0.3
CCDC7-209ENST00000539197 TMEM121BQ9BXQ6 578 aaPredicted RBP16.91■□□□□ 0.3
CCDC7-209ENST00000539197 PLSCR2Q9NRY7 297 aa16.9■□□□□ 0.3
CCDC7-209ENST00000539197 MICALL2Q8IY33 904 aa16.87■□□□□ 0.29
CCDC7-209ENST00000539197 FBXO22Q8NEZ5 403 aa16.85■□□□□ 0.29
CCDC7-209ENST00000539197 MFRPQ9BY79 579 aa16.84■□□□□ 0.29
CCDC7-209ENST00000539197 TMEM92Q6UXU6 159 aa16.83■□□□□ 0.28
CCDC7-209ENST00000539197 MARVELD3Q96A59 401 aa16.83■□□□□ 0.28
CCDC7-209ENST00000539197 NLRP6P59044 892 aa16.8■□□□□ 0.28
CCDC7-209ENST00000539197 HOXB3P14651 431 aaPredicted RBP16.76■□□□□ 0.27
CCDC7-209ENST00000539197 CDAN1Q8IWY9 1227 aa16.75■□□□□ 0.27
CCDC7-209ENST00000539197 EMP3P54852 163 aa16.64■□□□□ 0.25
CCDC7-209ENST00000539197 POTEB3A0JP26 581 aa16.63■□□□□ 0.25
CCDC7-209ENST00000539197 DOK7Q18PE1 504 aa16.63■□□□□ 0.25
CCDC7-209ENST00000539197 POTEBQ6S5H4 581 aa16.63■□□□□ 0.25
CCDC7-209ENST00000539197 PPP1R37O75864 691 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms