RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 IRX6P78412 446 aaPredicted RBP13.12□□□□□ -0.31
COL4A6-208ENST00000538570 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.12□□□□□ -0.31
COL4A6-208ENST00000538570 GOLGA6L22H0YM25 854 aa13.11□□□□□ -0.31
COL4A6-208ENST00000538570 CCDC180Q9P1Z9 1646 aa13.1□□□□□ -0.31
COL4A6-208ENST00000538570 CHIC2Q9UKJ5 165 aa13.1□□□□□ -0.31
COL4A6-208ENST00000538570 DCAF1Q9Y4B6 1507 aa13.1□□□□□ -0.31
COL4A6-208ENST00000538570 PODXL2Q9NZ53 605 aa13.09□□□□□ -0.31
COL4A6-208ENST00000538570 KDM2AQ9Y2K7 1162 aa13.08□□□□□ -0.31
COL4A6-208ENST00000538570 NPM1P06748 294 aaKnown RBP eCLIP13.08□□□□□ -0.32
COL4A6-208ENST00000538570 MIER1Q8N108 512 aa13.06□□□□□ -0.32
COL4A6-208ENST00000538570 DEKP35659 375 aaKnown RBP13.05□□□□□ -0.32
COL4A6-208ENST00000538570 PTMAP06454 111 aaKnown RBP13.04□□□□□ -0.32
COL4A6-208ENST00000538570 TSPY4P0CV99 314 aa13.03□□□□□ -0.32
COL4A6-208ENST00000538570 TSPY10P0CW01 314 aa13.03□□□□□ -0.32
COL4A6-208ENST00000538570 PPM1GO15355 546 aaPredicted RBP13.02□□□□□ -0.33
COL4A6-208ENST00000538570 EIF4G2P78344 907 aaKnown RBP eCLIP13.02□□□□□ -0.33
COL4A6-208ENST00000538570 ZRSR1Q15695 479 aaKnown RBP13.02□□□□□ -0.33
COL4A6-208ENST00000538570 DNTTIP2Q5QJE6 756 aaKnown RBP12.99□□□□□ -0.33
COL4A6-208ENST00000538570 A0A0U1RQG5 324 aaPredicted RBP12.99□□□□□ -0.33
COL4A6-208ENST00000538570 CASC1Q6TDU7 716 aa12.99□□□□□ -0.33
COL4A6-208ENST00000538570 A0A0G2JS52 829 aa12.99□□□□□ -0.33
COL4A6-208ENST00000538570 NOP58Q9Y2X3 529 aaKnown RBP12.99□□□□□ -0.33
COL4A6-208ENST00000538570 HIRIP3Q9BW71 556 aaPredicted RBP12.98□□□□□ -0.33
COL4A6-208ENST00000538570 LAS1LQ9Y4W2 734 aaKnown RBP12.97□□□□□ -0.33
COL4A6-208ENST00000538570 MTUS2Q5JR59 1369 aa12.97□□□□□ -0.33
COL4A6-208ENST00000538570 VSIG10Q8N0Z9 540 aa12.97□□□□□ -0.33
COL4A6-208ENST00000538570 ZBTB7CA1YPR0 619 aa12.96□□□□□ -0.33
COL4A6-208ENST00000538570 PKNOX2Q96KN3 472 aa12.94□□□□□ -0.34
COL4A6-208ENST00000538570 ARID4BQ4LE39 1312 aaPredicted RBP12.94□□□□□ -0.34
COL4A6-208ENST00000538570 CFAP53Q96M91 514 aa12.94□□□□□ -0.34
COL4A6-208ENST00000538570 C14orf37Q86TY3 774 aa12.93□□□□□ -0.34
COL4A6-208ENST00000538570 RB1CC1Q8TDY2 1594 aa12.93□□□□□ -0.34
COL4A6-208ENST00000538570 FTSJ3Q8IY81 847 aaKnown RBP12.92□□□□□ -0.34
COL4A6-208ENST00000538570 TNNT3P45378 269 aaPredicted RBP12.91□□□□□ -0.34
COL4A6-208ENST00000538570 TPRNQ4KMQ1 711 aa12.91□□□□□ -0.34
COL4A6-208ENST00000538570 PPP1R15AO75807 674 aaPredicted RBP12.89□□□□□ -0.35
COL4A6-208ENST00000538570 RRP7BPQ9NSQ0 103 aa12.88□□□□□ -0.35
COL4A6-208ENST00000538570 SUPT16HQ9Y5B9 1047 aaKnown RBP12.88□□□□□ -0.35
COL4A6-208ENST00000538570 PLEKHG5O94827 1062 aa12.88□□□□□ -0.35
COL4A6-208ENST00000538570 CDCA8Q53HL2 280 aa12.88□□□□□ -0.35
COL4A6-208ENST00000538570 GOLGA6L6A8MZA4 724 aa12.88□□□□□ -0.35
COL4A6-208ENST00000538570 KNSTRNQ9Y448 316 aa12.87□□□□□ -0.35
COL4A6-208ENST00000538570 PLCB2Q00722 1185 aa12.85□□□□□ -0.35
COL4A6-208ENST00000538570 SENP3Q9H4L4 574 aaPredicted RBP12.84□□□□□ -0.35
COL4A6-208ENST00000538570 CALRP27797 417 aaKnown RBP12.84□□□□□ -0.35
COL4A6-208ENST00000538570 CLIP1P30622 1438 aa12.84□□□□□ -0.35
COL4A6-208ENST00000538570 PPP4R2Q9NY27 417 aa12.84□□□□□ -0.35
COL4A6-208ENST00000538570 TULP1O00294 542 aaPredicted RBP12.84□□□□□ -0.35
COL4A6-208ENST00000538570 HSP90AB1P08238 724 aaKnown RBP12.83□□□□□ -0.35
COL4A6-208ENST00000538570 RSF1Q96T23 1441 aaPredicted RBP12.83□□□□□ -0.36
COL4A6-208ENST00000538570 MAPK8IP3Q9UPT6 1336 aa12.83□□□□□ -0.36
COL4A6-208ENST00000538570 NACADO15069 1562 aa12.82□□□□□ -0.36
COL4A6-208ENST00000538570 RGL3Q3MIN7 710 aa12.82□□□□□ -0.36
COL4A6-208ENST00000538570 SENP3-EIF4A1A0A087X0R7 540 aa12.81□□□□□ -0.36
COL4A6-208ENST00000538570 CHMP4BQ9H444 224 aaKnown RBP12.81□□□□□ -0.36
COL4A6-208ENST00000538570 NRDCO43847 1150 aa12.81□□□□□ -0.36
COL4A6-208ENST00000538570 RGS3P49796 1198 aa12.81□□□□□ -0.36
COL4A6-208ENST00000538570 ARID3AQ99856 593 aa12.81□□□□□ -0.36
COL4A6-208ENST00000538570 L1TD1Q5T7N2 865 aaKnown RBP12.8□□□□□ -0.36
COL4A6-208ENST00000538570 HSP90AA2PQ14568 343 aaPredicted RBP12.8□□□□□ -0.36
COL4A6-208ENST00000538570 CHMP7Q8WUX9 453 aaPredicted RBP12.8□□□□□ -0.36
COL4A6-208ENST00000538570 RBM19Q9Y4C8 960 aaKnown RBP12.8□□□□□ -0.36
COL4A6-208ENST00000538570 HAP1P54257 671 aaPredicted RBP12.79□□□□□ -0.36
COL4A6-208ENST00000538570 NUDCQ9Y266 331 aa12.79□□□□□ -0.36
COL4A6-208ENST00000538570 NEUROD2Q15784 382 aa12.79□□□□□ -0.36
COL4A6-208ENST00000538570 CARD11Q9BXL7 1154 aa12.79□□□□□ -0.36
COL4A6-208ENST00000538570 MS4A1P11836 297 aa12.78□□□□□ -0.36
COL4A6-208ENST00000538570 PTMSP20962 102 aa12.78□□□□□ -0.36
COL4A6-208ENST00000538570 MSNP26038 577 aaKnown RBP12.78□□□□□ -0.36
COL4A6-208ENST00000538570 FRAT1Q92837 279 aaPredicted RBP12.78□□□□□ -0.36
COL4A6-208ENST00000538570 EEA1Q15075 1411 aa12.78□□□□□ -0.36
COL4A6-208ENST00000538570 FGD1P98174 961 aa12.78□□□□□ -0.36
COL4A6-208ENST00000538570 CHAF1AQ13111 956 aaPredicted RBP12.77□□□□□ -0.36
COL4A6-208ENST00000538570 APPP05067 770 aa12.77□□□□□ -0.36
COL4A6-208ENST00000538570 TAOK2Q9UL54 1235 aa12.76□□□□□ -0.37
COL4A6-208ENST00000538570 OS9Q13438 667 aaPredicted RBP12.76□□□□□ -0.37
COL4A6-208ENST00000538570 KCNJ4P48050 445 aa12.75□□□□□ -0.37
COL4A6-208ENST00000538570 HSCBQ8IWL3 235 aa12.75□□□□□ -0.37
COL4A6-208ENST00000538570 PLEKHD1A6NEE1 506 aa12.75□□□□□ -0.37
COL4A6-208ENST00000538570 KCNH8Q96L42 1107 aa12.74□□□□□ -0.37
COL4A6-208ENST00000538570 GOLGA6L4A6NEF3 574 aa12.74□□□□□ -0.37
COL4A6-208ENST00000538570 RSPH6AQ9H0K4 717 aa12.74□□□□□ -0.37
COL4A6-208ENST00000538570 NAP1L2Q9ULW6 460 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-208ENST00000538570 BAZ1BQ9UIG0 1483 aaKnown RBP12.72□□□□□ -0.37
COL4A6-208ENST00000538570 PNNQ9H307 717 aaKnown RBP12.72□□□□□ -0.37
COL4A6-208ENST00000538570 GOLGA3Q08378 1498 aa12.72□□□□□ -0.37
COL4A6-208ENST00000538570 WRNQ14191 1432 aaPredicted RBP eCLIP12.71□□□□□ -0.37
COL4A6-208ENST00000538570 MCCP23508 829 aa12.69□□□□□ -0.38
COL4A6-208ENST00000538570 B4GALNT3Q6L9W6 998 aa12.69□□□□□ -0.38
COL4A6-208ENST00000538570 NPHP1O15259 732 aa12.69□□□□□ -0.38
COL4A6-208ENST00000538570 CC2D1BQ5T0F9 858 aaKnown RBP12.69□□□□□ -0.38
COL4A6-208ENST00000538570 CEP162Q5TB80 1403 aa12.69□□□□□ -0.38
COL4A6-208ENST00000538570 POGKQ9P215 609 aa12.69□□□□□ -0.38
COL4A6-208ENST00000538570 DRC7Q8IY82 874 aa12.68□□□□□ -0.38
COL4A6-208ENST00000538570 CFDP1Q9UEE9 299 aaPredicted RBP12.68□□□□□ -0.38
COL4A6-208ENST00000538570 U2SURPO15042 1029 aaKnown RBP12.68□□□□□ -0.38
COL4A6-208ENST00000538570 GOLGA2Q08379 1002 aa12.67□□□□□ -0.38
COL4A6-208ENST00000538570 CFAP44Q96MT7 982 aa12.67□□□□□ -0.38
COL4A6-208ENST00000538570 TIMELESSQ9UNS1 1208 aa12.66□□□□□ -0.38
COL4A6-208ENST00000538570 KIF27Q86VH2 1401 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms