RNA–Protein interactions for RNA: ENST00000535236.5

SFSWAP-203, Transcript of splicing factor SWAP, humanhuman

TSL 1 (best)

Gene SFSWAP, Length 5,593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-203ENST00000535236 HAP1P54257 671 aaPredicted RBP24.05■■□□□ 1.44
SFSWAP-203ENST00000535236 EIF4G2P78344 907 aaKnown RBP eCLIP24.02■■□□□ 1.44
SFSWAP-203ENST00000535236 RRP7BPQ9NSQ0 103 aa24.02■■□□□ 1.44
SFSWAP-203ENST00000535236 NBR1Q14596 966 aa24■■□□□ 1.43
SFSWAP-203ENST00000535236 ARID4BQ4LE39 1312 aaPredicted RBP23.99■■□□□ 1.43
SFSWAP-203ENST00000535236 PLEKHD1A6NEE1 506 aa23.99■■□□□ 1.43
SFSWAP-203ENST00000535236 HIRIP3Q9BW71 556 aaPredicted RBP23.95■■□□□ 1.43
SFSWAP-203ENST00000535236 CFAP53Q96M91 514 aa23.94■■□□□ 1.42
SFSWAP-203ENST00000535236 IRX6P78412 446 aaPredicted RBP23.92■■□□□ 1.42
SFSWAP-203ENST00000535236 NCLP19338 710 aaKnown RBP23.92■■□□□ 1.42
SFSWAP-203ENST00000535236 RGL3Q3MIN7 710 aa23.92■■□□□ 1.42
SFSWAP-203ENST00000535236 CLIP1P30622 1438 aa23.9■■□□□ 1.42
SFSWAP-203ENST00000535236 RSF1Q96T23 1441 aaPredicted RBP23.9■■□□□ 1.42
SFSWAP-203ENST00000535236 GLIPR1L2Q4G1C9 344 aa23.89■■□□□ 1.41
SFSWAP-203ENST00000535236 DCAF1Q9Y4B6 1507 aa23.89■■□□□ 1.41
SFSWAP-203ENST00000535236 BECN1Q14457 450 aa23.87■■□□□ 1.41
SFSWAP-203ENST00000535236 CDCA8Q53HL2 280 aa23.86■■□□□ 1.41
SFSWAP-203ENST00000535236 PPM1GO15355 546 aaPredicted RBP23.86■■□□□ 1.41
SFSWAP-203ENST00000535236 KNSTRNQ9Y448 316 aa23.82■■□□□ 1.4
SFSWAP-203ENST00000535236 DDRGK1Q96HY6 314 aa23.8■■□□□ 1.4
SFSWAP-203ENST00000535236 GOLGA6L22H0YM25 854 aa23.79■■□□□ 1.4
SFSWAP-203ENST00000535236 CFDP1Q9UEE9 299 aaPredicted RBP23.78■■□□□ 1.4
SFSWAP-203ENST00000535236 CASC1Q6TDU7 716 aa23.78■■□□□ 1.4
SFSWAP-203ENST00000535236 ZRSR1Q15695 479 aaKnown RBP23.76■■□□□ 1.39
SFSWAP-203ENST00000535236 LMOD2Q6P5Q4 547 aa23.76■■□□□ 1.39
SFSWAP-203ENST00000535236 MIER1Q8N108 512 aa23.75■■□□□ 1.39
SFSWAP-203ENST00000535236 FTSJ3Q8IY81 847 aaKnown RBP23.74■■□□□ 1.39
SFSWAP-203ENST00000535236 MAPK8IP3Q9UPT6 1336 aa23.73■■□□□ 1.39
SFSWAP-203ENST00000535236 ZCCHC6Q5VYS8 1495 aaKnown RBP23.73■■□□□ 1.39
SFSWAP-203ENST00000535236 POGKQ9P215 609 aa23.72■■□□□ 1.39
SFSWAP-203ENST00000535236 LAS1LQ9Y4W2 734 aaKnown RBP23.72■■□□□ 1.39
SFSWAP-203ENST00000535236 CARD11Q9BXL7 1154 aa23.71■■□□□ 1.39
SFSWAP-203ENST00000535236 ANP32EQ9BTT0 268 aa23.71■■□□□ 1.39
SFSWAP-203ENST00000535236 NPHP1O15259 732 aa23.7■■□□□ 1.39
SFSWAP-203ENST00000535236 TRIM44Q96DX7 344 aaPredicted RBP23.7■■□□□ 1.38
SFSWAP-203ENST00000535236 NUDCQ9Y266 331 aa23.7■■□□□ 1.38
SFSWAP-203ENST00000535236 NEUROD2Q15784 382 aa23.67■■□□□ 1.38
SFSWAP-203ENST00000535236 TULP1O00294 542 aaPredicted RBP23.66■■□□□ 1.38
SFSWAP-203ENST00000535236 GOLGA3Q08378 1498 aa23.65■■□□□ 1.38
SFSWAP-203ENST00000535236 SENP3-EIF4A1A0A087X0R7 540 aa23.64■■□□□ 1.38
SFSWAP-203ENST00000535236 PTMAP06454 111 aaKnown RBP23.6■■□□□ 1.37
SFSWAP-203ENST00000535236 TPRNQ4KMQ1 711 aa23.6■■□□□ 1.37
SFSWAP-203ENST00000535236 EEA1Q15075 1411 aa23.59■■□□□ 1.37
SFSWAP-203ENST00000535236 OS9Q13438 667 aaPredicted RBP23.56■■□□□ 1.36
SFSWAP-203ENST00000535236 TNNT2P45379 298 aaPredicted RBP23.55■■□□□ 1.36
SFSWAP-203ENST00000535236 CEP162Q5TB80 1403 aa23.54■■□□□ 1.36
SFSWAP-203ENST00000535236 CHMP4BQ9H444 224 aaKnown RBP23.54■■□□□ 1.36
SFSWAP-203ENST00000535236 RB1CC1Q8TDY2 1594 aa23.53■■□□□ 1.36
SFSWAP-203ENST00000535236 TAOK2Q9UL54 1235 aa23.52■■□□□ 1.36
SFSWAP-203ENST00000535236 FRAT1Q92837 279 aaPredicted RBP23.52■■□□□ 1.36
SFSWAP-203ENST00000535236 KIF27Q86VH2 1401 aa23.52■■□□□ 1.36
SFSWAP-203ENST00000535236 U2SURPO15042 1029 aaKnown RBP23.51■■□□□ 1.35
SFSWAP-203ENST00000535236 ERCC6Q03468 1493 aa23.51■■□□□ 1.35
SFSWAP-203ENST00000535236 PNNQ9H307 717 aaKnown RBP23.5■■□□□ 1.35
SFSWAP-203ENST00000535236 FGD1P98174 961 aa23.49■■□□□ 1.35
SFSWAP-203ENST00000535236 GOLGA2Q08379 1002 aa23.49■■□□□ 1.35
SFSWAP-203ENST00000535236 WRNQ14191 1432 aaPredicted RBP eCLIP23.48■■□□□ 1.35
SFSWAP-203ENST00000535236 MS4A1P11836 297 aa23.47■■□□□ 1.35
SFSWAP-203ENST00000535236 CC2D1BQ5T0F9 858 aaKnown RBP23.46■■□□□ 1.35
SFSWAP-203ENST00000535236 BAZ1BQ9UIG0 1483 aaKnown RBP23.46■■□□□ 1.35
SFSWAP-203ENST00000535236 DNTTIP2Q5QJE6 756 aaKnown RBP23.46■■□□□ 1.35
SFSWAP-203ENST00000535236 HDGFP51858 240 aaKnown RBP23.46■■□□□ 1.35
SFSWAP-203ENST00000535236 SUPT16HQ9Y5B9 1047 aaKnown RBP23.45■■□□□ 1.35
SFSWAP-203ENST00000535236 TRHP20396 242 aaPredicted RBP23.45■■□□□ 1.34
SFSWAP-203ENST00000535236 KCNJ4P48050 445 aa23.45■■□□□ 1.34
SFSWAP-203ENST00000535236 RGS3P49796 1198 aa23.43■■□□□ 1.34
SFSWAP-203ENST00000535236 KANK1Q14678 1352 aa23.43■■□□□ 1.34
SFSWAP-203ENST00000535236 NAP1L2Q9ULW6 460 aaPredicted RBP23.42■■□□□ 1.34
SFSWAP-203ENST00000535236 CCNB3Q8WWL7 1395 aa23.41■■□□□ 1.34
SFSWAP-203ENST00000535236 MLECQ14165 292 aa23.41■■□□□ 1.34
SFSWAP-203ENST00000535236 TMF1P82094 1093 aa23.39■■□□□ 1.33
SFSWAP-203ENST00000535236 PLCB2Q00722 1185 aa23.38■■□□□ 1.33
SFSWAP-203ENST00000535236 SOX12O15370 315 aa23.37■■□□□ 1.33
SFSWAP-203ENST00000535236 HSP90AB1P08238 724 aaKnown RBP23.37■■□□□ 1.33
SFSWAP-203ENST00000535236 GOLGA6L6A8MZA4 724 aa23.36■■□□□ 1.33
SFSWAP-203ENST00000535236 SRPK2P78362 688 aaKnown RBP23.36■■□□□ 1.33
SFSWAP-203ENST00000535236 CEP164Q9UPV0 1460 aa23.36■■□□□ 1.33
SFSWAP-203ENST00000535236 SIN3AQ96ST3 1273 aa23.35■■□□□ 1.33
SFSWAP-203ENST00000535236 DCAF11Q8TEB1 546 aa23.34■■□□□ 1.33
SFSWAP-203ENST00000535236 PPP4R2Q9NY27 417 aa23.31■■□□□ 1.32
SFSWAP-203ENST00000535236 CCDC180Q9P1Z9 1646 aa23.3■■□□□ 1.32
SFSWAP-203ENST00000535236 TNIKQ9UKE5 1360 aa23.3■■□□□ 1.32
SFSWAP-203ENST00000535236 MORC1Q86VD1 984 aa23.28■■□□□ 1.32
SFSWAP-203ENST00000535236 GOLGA6L4A6NEF3 574 aa23.27■■□□□ 1.32
SFSWAP-203ENST00000535236 NRDCO43847 1150 aa23.27■■□□□ 1.32
SFSWAP-203ENST00000535236 SAFB2Q14151 953 aaKnown RBP eCLIP23.27■■□□□ 1.329e-7■■■□□ 17.3
SFSWAP-203ENST00000535236 RTF1Q92541 710 aaKnown RBP23.26■■□□□ 1.31
SFSWAP-203ENST00000535236 EIF4G1Q04637 1599 aaKnown RBP23.26■■□□□ 1.31
SFSWAP-203ENST00000535236 ISY1Q9ULR0 285 aaKnown RBP23.23■■□□□ 1.31
SFSWAP-203ENST00000535236 MCCP23508 829 aa23.23■■□□□ 1.31
SFSWAP-203ENST00000535236 ERICH6BQ5W0A0 696 aa23.22■■□□□ 1.31
SFSWAP-203ENST00000535236 CLSTN1O94985 981 aa23.22■■□□□ 1.31
SFSWAP-203ENST00000535236 FHAD1B1AJZ9 1412 aa23.21■■□□□ 1.31
SFSWAP-203ENST00000535236 GGT6Q6P531 493 aa23.2■■□□□ 1.31
SFSWAP-203ENST00000535236 HSCBQ8IWL3 235 aa23.2■■□□□ 1.3
SFSWAP-203ENST00000535236 HDGFL2Q7Z4V5 671 aaPredicted RBP23.19■■□□□ 1.3
SFSWAP-203ENST00000535236 STK26Q9P289 416 aa23.18■■□□□ 1.3
SFSWAP-203ENST00000535236 PAK3O75914 559 aaPredicted RBP23.14■■□□□ 1.3
SFSWAP-203ENST00000535236 NAP1L5Q96NT1 182 aaPredicted RBP23.14■■□□□ 1.3
SFSWAP-203ENST00000535236 CSB-PGBD3P0DP91 1061 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms