RNA–Protein interactions for RNA: ENST00000534532.6

NCAPD3-213, Transcript of non-SMC condensin II complex subunit D3, human

TSL 2

Gene NCAPD3, Length 5,539 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCAPD3-213	ENST00000534532	FAM9B	Q8IZU0	186 aa		21.15	■□□□□ 0.98
NCAPD3-213	ENST00000534532	DDX10	Q13206	875 aa	Known RBP	21.14	■□□□□ 0.98
NCAPD3-213	ENST00000534532	SALL2	Q9Y467	1007 aa	Predicted RBP	21.11	■□□□□ 0.97
NCAPD3-213	ENST00000534532	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	21.11	■□□□□ 0.97
NCAPD3-213	ENST00000534532	HNRNPU	Q00839	825 aa	Known RBP eCLIP	21.1	■□□□□ 0.97
NCAPD3-213	ENST00000534532	GOLGA3	Q08378	1498 aa		21.1	■□□□□ 0.97
NCAPD3-213	ENST00000534532	GTF3C3	Q9Y5Q9	886 aa		21.09	■□□□□ 0.97
NCAPD3-213	ENST00000534532	RGL3	Q3MIN7	710 aa		21.07	■□□□□ 0.96
NCAPD3-213	ENST00000534532	UPF2	Q9HAU5	1272 aa	Known RBP	21.06	■□□□□ 0.96
NCAPD3-213	ENST00000534532	ANP32A	P39687	249 aa	Known RBP	21.05	■□□□□ 0.96
NCAPD3-213	ENST00000534532	HSP90AA1	P07900	732 aa	Known RBP	21.05	■□□□□ 0.96
NCAPD3-213	ENST00000534532	EIF4G2	P78344	907 aa	Known RBP eCLIP	21.04	■□□□□ 0.96
NCAPD3-213	ENST00000534532	CDCA8	Q53HL2	280 aa		21.02	■□□□□ 0.96
NCAPD3-213	ENST00000534532	MRS2	Q9HD23	443 aa		20.99	■□□□□ 0.95
NCAPD3-213	ENST00000534532	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	20.99	■□□□□ 0.95
NCAPD3-213	ENST00000534532	DCAF1	Q9Y4B6	1507 aa		20.97	■□□□□ 0.95
NCAPD3-213	ENST00000534532	CFAP53	Q96M91	514 aa		20.96	■□□□□ 0.95
NCAPD3-213	ENST00000534532	MYH16	Q9H6N6	1097 aa		20.96	■□□□□ 0.95
NCAPD3-213	ENST00000534532	POGK	Q9P215	609 aa		20.94	■□□□□ 0.94
NCAPD3-213	ENST00000534532	HDGF	P51858	240 aa	Known RBP	20.94	■□□□□ 0.94
NCAPD3-213	ENST00000534532	LMOD2	Q6P5Q4	547 aa		20.93	■□□□□ 0.94
NCAPD3-213	ENST00000534532	CEP164	Q9UPV0	1460 aa		20.92	■□□□□ 0.94
NCAPD3-213	ENST00000534532	CEP162	Q5TB80	1403 aa		20.91	■□□□□ 0.94
NCAPD3-213	ENST00000534532	CCNB3	Q8WWL7	1395 aa		20.9	■□□□□ 0.94
NCAPD3-213	ENST00000534532	PDS5B	Q9NTI5	1447 aa		20.88	■□□□□ 0.93
NCAPD3-213	ENST00000534532	MLEC	Q14165	292 aa		20.88	■□□□□ 0.93
NCAPD3-213	ENST00000534532	KNSTRN	Q9Y448	316 aa		20.87	■□□□□ 0.93
NCAPD3-213	ENST00000534532	KANK1	Q14678	1352 aa		20.86	■□□□□ 0.93
NCAPD3-213	ENST00000534532	PPM1G	O15355	546 aa	Predicted RBP	20.85	■□□□□ 0.93
NCAPD3-213	ENST00000534532	CARMIL1	Q5VZK9	1371 aa		20.85	■□□□□ 0.93
NCAPD3-213	ENST00000534532	FKBP8	Q14318	412 aa		20.85	■□□□□ 0.93
NCAPD3-213	ENST00000534532	ARX	Q96QS3	562 aa		20.85	■□□□□ 0.93
NCAPD3-213	ENST00000534532	EIF4G1	Q04637	1599 aa	Known RBP	20.83	■□□□□ 0.93
NCAPD3-213	ENST00000534532	CARD11	Q9BXL7	1154 aa		20.83	■□□□□ 0.93
NCAPD3-213	ENST00000534532	ANP32B	Q92688	251 aa	Known RBP	20.83	■□□□□ 0.92
NCAPD3-213	ENST00000534532	CUX2	O14529	1486 aa		20.83	■□□□□ 0.92
NCAPD3-213	ENST00000534532	TNIK	Q9UKE5	1360 aa		20.82	■□□□□ 0.92
NCAPD3-213	ENST00000534532	CCDC136	Q96JN2	1154 aa		20.82	■□□□□ 0.92
NCAPD3-213	ENST00000534532	FHAD1	B1AJZ9	1412 aa		20.81	■□□□□ 0.92
NCAPD3-213	ENST00000534532	HIRIP3	Q9BW71	556 aa	Predicted RBP	20.8	■□□□□ 0.92
NCAPD3-213	ENST00000534532	CARMIL2	Q6F5E8	1435 aa		20.79	■□□□□ 0.92
NCAPD3-213	ENST00000534532	NUDC	Q9Y266	331 aa		20.77	■□□□□ 0.92
NCAPD3-213	ENST00000534532	CECR2	Q9BXF3	1484 aa		20.73	■□□□□ 0.91
NCAPD3-213	ENST00000534532	MAPK8IP3	Q9UPT6	1336 aa		20.72	■□□□□ 0.91
NCAPD3-213	ENST00000534532	NPHP1	O15259	732 aa		20.71	■□□□□ 0.91
NCAPD3-213	ENST00000534532	GGT6	Q6P531	493 aa		20.7	■□□□□ 0.91
NCAPD3-213	ENST00000534532	SMARCA2	P51531	1590 aa		20.68	■□□□□ 0.9
NCAPD3-213	ENST00000534532	SOGA1	O94964	1423 aa		20.65	■□□□□ 0.9
NCAPD3-213	ENST00000534532	EFCAB2	Q5VUJ9	269 aa		20.65	■□□□□ 0.9
NCAPD3-213	ENST00000534532	TDRD9	Q8NDG6	1382 aa	Known RBP	20.61	■□□□□ 0.89
NCAPD3-213	ENST00000534532	PNN	Q9H307	717 aa	Known RBP	20.61	■□□□□ 0.89
NCAPD3-213	ENST00000534532	LAS1L	Q9Y4W2	734 aa	Known RBP	20.6	■□□□□ 0.89
NCAPD3-213	ENST00000534532	SRPK2	P78362	688 aa	Known RBP	20.59	■□□□□ 0.89
NCAPD3-213	ENST00000534532	DCAF11	Q8TEB1	546 aa		20.59	■□□□□ 0.89
NCAPD3-213	ENST00000534532	TMF1	P82094	1093 aa		20.58	■□□□□ 0.89
NCAPD3-213	ENST00000534532	NEUROD2	Q15784	382 aa		20.58	■□□□□ 0.88
NCAPD3-213	ENST00000534532	CDK11B	P21127	795 aa	Known RBP	20.56	■□□□□ 0.88
NCAPD3-213	ENST00000534532	TNNT2	P45379	298 aa	Predicted RBP	20.56	■□□□□ 0.88
NCAPD3-213	ENST00000534532	FTSJ3	Q8IY81	847 aa	Known RBP	20.56	■□□□□ 0.88
NCAPD3-213	ENST00000534532	U2SURP	O15042	1029 aa	Known RBP	20.55	■□□□□ 0.88
NCAPD3-213	ENST00000534532	SOX12	O15370	315 aa		20.5	■□□□□ 0.87
NCAPD3-213	ENST00000534532	CHMP4B	Q9H444	224 aa	Known RBP	20.5	■□□□□ 0.87
NCAPD3-213	ENST00000534532	SAFB2	Q14151	953 aa	Known RBP eCLIP	20.49	■□□□□ 0.87
NCAPD3-213	ENST00000534532	EIF5B	O60841	1220 aa	Known RBP	20.49	■□□□□ 0.87
NCAPD3-213	ENST00000534532	CADPS	Q9ULU8	1353 aa		20.49	■□□□□ 0.87
NCAPD3-213	ENST00000534532	CASC1	Q6TDU7	716 aa		20.49	■□□□□ 0.87
NCAPD3-213	ENST00000534532	SIN3A	Q96ST3	1273 aa		20.49	■□□□□ 0.87
NCAPD3-213	ENST00000534532	CCDC88B	A6NC98	1476 aa		20.48	■□□□□ 0.87
NCAPD3-213	ENST00000534532	STK26	Q9P289	416 aa		20.47	■□□□□ 0.87
NCAPD3-213	ENST00000534532	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	20.46	■□□□□ 0.87
NCAPD3-213	ENST00000534532	MIER1	Q8N108	512 aa		20.46	■□□□□ 0.87
NCAPD3-213	ENST00000534532	CC2D1B	Q5T0F9	858 aa	Known RBP	20.46	■□□□□ 0.87
NCAPD3-213	ENST00000534532	FMN1	Q68DA7	1419 aa		20.45	■□□□□ 0.86
NCAPD3-213	ENST00000534532	EID1	Q9Y6B2	187 aa		20.45	■□□□□ 0.86
NCAPD3-213	ENST00000534532	IRX6	P78412	446 aa	Predicted RBP	20.43	■□□□□ 0.86
NCAPD3-213	ENST00000534532	PKD2	Q13563	968 aa		20.43	■□□□□ 0.86
NCAPD3-213	ENST00000534532	ARHGAP35	Q9NRY4	1499 aa		20.43	■□□□□ 0.86
NCAPD3-213	ENST00000534532	MS4A1	P11836	297 aa		20.43	■□□□□ 0.86
NCAPD3-213	ENST00000534532	NCL	P19338	710 aa	Known RBP	20.42	■□□□□ 0.86
NCAPD3-213	ENST00000534532	GOLGA2	Q08379	1002 aa		20.42	■□□□□ 0.86
NCAPD3-213	ENST00000534532	MORC1	Q86VD1	984 aa		20.42	■□□□□ 0.86
NCAPD3-213	ENST00000534532	MROH2B	Q7Z745	1585 aa		20.42	■□□□□ 0.86
NCAPD3-213	ENST00000534532	OS9	Q13438	667 aa	Predicted RBP	20.42	■□□□□ 0.86
NCAPD3-213	ENST00000534532	KIF3B	O15066	747 aa		20.41	■□□□□ 0.86
NCAPD3-213	ENST00000534532	PAK3	O75914	559 aa	Predicted RBP	20.41	■□□□□ 0.86
NCAPD3-213	ENST00000534532	BECN1	Q14457	450 aa		20.4	■□□□□ 0.86
NCAPD3-213	ENST00000534532	CSB-PGBD3	P0DP91	1061 aa		20.4	■□□□□ 0.86
NCAPD3-213	ENST00000534532	JPH4	Q96JJ6	628 aa		20.39	■□□□□ 0.86
NCAPD3-213	ENST00000534532	ANKRD30A	Q9BXX3	1397 aa		20.39	■□□□□ 0.85
NCAPD3-213	ENST00000534532	RSPH4A	Q5TD94	716 aa		20.39	■□□□□ 0.85
NCAPD3-213	ENST00000534532	RTF1	Q92541	710 aa	Known RBP	20.38	■□□□□ 0.85
NCAPD3-213	ENST00000534532	TIMELESS	Q9UNS1	1208 aa		20.38	■□□□□ 0.85
NCAPD3-213	ENST00000534532	SPAG9	O60271	1321 aa	Known RBP	20.37	■□□□□ 0.85
NCAPD3-213	ENST00000534532	SENP3-EIF4A1	A0A087X0R7	540 aa		20.36	■□□□□ 0.85
NCAPD3-213	ENST00000534532	FRAT1	Q92837	279 aa	Predicted RBP	20.36	■□□□□ 0.85
NCAPD3-213	ENST00000534532	OSCAR	Q8IYS5	282 aa		20.35	■□□□□ 0.85
NCAPD3-213	ENST00000534532	NUP155	O75694	1391 aa		20.35	■□□□□ 0.85
NCAPD3-213	ENST00000534532	WASHC2C	Q9Y4E1	1318 aa		20.34	■□□□□ 0.85
NCAPD3-213	ENST00000534532	CYB5RL	Q6IPT4	315 aa		20.32	■□□□□ 0.84
NCAPD3-213	ENST00000534532	CCDC9	Q9Y3X0	531 aa	Known RBP	20.32	■□□□□ 0.84

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms