RNA–Protein interactions for RNA: ENST00000528516.5

LTBP3-210, Transcript of latent transforming growth factor beta binding protein 3, humanhuman

TSL 1 (best)

Gene LTBP3, Length 3,935 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTBP3-210ENST00000528516 MSH5O43196 834 aa24.83■■□□□ 1.57
LTBP3-210ENST00000528516 EEA1Q15075 1411 aa24.82■■□□□ 1.56
LTBP3-210ENST00000528516 GOLGA3Q08378 1498 aa24.81■■□□□ 1.56
LTBP3-210ENST00000528516 DEKP35659 375 aaKnown RBP24.79■■□□□ 1.56
LTBP3-210ENST00000528516 NBR1Q14596 966 aa24.79■■□□□ 1.56
LTBP3-210ENST00000528516 ZNF777Q9ULD5 760 aaPredicted RBP24.79■■□□□ 1.56
LTBP3-210ENST00000528516 DHX57Q6P158 1386 aaKnown RBP24.77■■□□□ 1.56
LTBP3-210ENST00000528516 CFTRP13569 1480 aa24.74■■□□□ 1.55
LTBP3-210ENST00000528516 NESP48681 1621 aa24.72■■□□□ 1.55
LTBP3-210ENST00000528516 SIN3AQ96ST3 1273 aa24.72■■□□□ 1.55
LTBP3-210ENST00000528516 SLC4A1APQ9BWU0 796 aaKnown RBP24.71■■□□□ 1.55
LTBP3-210ENST00000528516 HNRNPUQ00839 825 aaKnown RBP eCLIP24.71■■□□□ 1.55
LTBP3-210ENST00000528516 FAM9BQ8IZU0 186 aa24.69■■□□□ 1.54
LTBP3-210ENST00000528516 SALL2Q9Y467 1007 aaPredicted RBP24.69■■□□□ 1.54
LTBP3-210ENST00000528516 CEP164Q9UPV0 1460 aa24.66■■□□□ 1.54
LTBP3-210ENST00000528516 KIF27Q86VH2 1401 aa24.65■■□□□ 1.54
LTBP3-210ENST00000528516 RAPGEF2Q9Y4G8 1499 aa24.63■■□□□ 1.53
LTBP3-210ENST00000528516 CUX2O14529 1486 aa24.62■■□□□ 1.53
LTBP3-210ENST00000528516 RTL5Q5HYW3 569 aaPredicted RBP24.61■■□□□ 1.53
LTBP3-210ENST00000528516 VPS8Q8N3P4 1428 aa24.61■■□□□ 1.53
LTBP3-210ENST00000528516 FANCD2Q9BXW9 1451 aa24.61■■□□□ 1.53
LTBP3-210ENST00000528516 CUX1P39880 1505 aa24.6■■□□□ 1.53
LTBP3-210ENST00000528516 KANK4Q5T7N3 995 aaPredicted RBP24.59■■□□□ 1.53
LTBP3-210ENST00000528516 RRP7BPQ9NSQ0 103 aa24.58■■□□□ 1.53
LTBP3-210ENST00000528516 FANCIQ9NVI1 1328 aa24.58■■□□□ 1.53
LTBP3-210ENST00000528516 TONSLQ96HA7 1378 aa24.57■■□□□ 1.52
LTBP3-210ENST00000528516 ANO8Q9HCE9 1232 aaPredicted RBP24.55■■□□□ 1.52
LTBP3-210ENST00000528516 TOP2BQ02880 1626 aa24.53■■□□□ 1.52
LTBP3-210ENST00000528516 RTN4Q9NQC3 1192 aaKnown RBP24.48■■□□□ 1.51
LTBP3-210ENST00000528516 FGD5Q6ZNL6 1462 aa24.46■■□□□ 1.51
LTBP3-210ENST00000528516 RAD54L2Q9Y4B4 1467 aa24.45■■□□□ 1.5
LTBP3-210ENST00000528516 DAXXQ9UER7 740 aaPredicted RBP24.44■■□□□ 1.5
LTBP3-210ENST00000528516 TDRD9Q8NDG6 1382 aaKnown RBP24.44■■□□□ 1.5
LTBP3-210ENST00000528516 NOP58Q9Y2X3 529 aaKnown RBP24.42■■□□□ 1.5
LTBP3-210ENST00000528516 CARMIL1Q5VZK9 1371 aa24.41■■□□□ 1.5
LTBP3-210ENST00000528516 NPM2Q86SE8 214 aaKnown RBP24.41■■□□□ 1.5
LTBP3-210ENST00000528516 CCDC136Q96JN2 1154 aa24.41■■□□□ 1.5
LTBP3-210ENST00000528516 CCER2I3L3R5 266 aa24.4■■□□□ 1.5
LTBP3-210ENST00000528516 B4GALNT3Q6L9W6 998 aa24.4■■□□□ 1.5
LTBP3-210ENST00000528516 KDM2AQ9Y2K7 1162 aa24.39■■□□□ 1.5
LTBP3-210ENST00000528516 PDS5BQ9NTI5 1447 aa24.38■■□□□ 1.49
LTBP3-210ENST00000528516 IGF1RP08069 1367 aa24.36■■□□□ 1.49
LTBP3-210ENST00000528516 MTUS2Q5JR59 1369 aa24.34■■□□□ 1.49
LTBP3-210ENST00000528516 PPP4R2Q9NY27 417 aa24.33■■□□□ 1.49
LTBP3-210ENST00000528516 ANP32AP39687 249 aaKnown RBP24.33■■□□□ 1.48
LTBP3-210ENST00000528516 MRS2Q9HD23 443 aa24.32■■□□□ 1.48
LTBP3-210ENST00000528516 SENP3Q9H4L4 574 aaPredicted RBP24.3■■□□□ 1.48
LTBP3-210ENST00000528516 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.29■■□□□ 1.48
LTBP3-210ENST00000528516 PPP1R15AO75807 674 aaPredicted RBP24.29■■□□□ 1.48
LTBP3-210ENST00000528516 BIVM-ERCC5R4GMW8 1640 aa24.28■■□□□ 1.48
LTBP3-210ENST00000528516 CCNB3Q8WWL7 1395 aa24.27■■□□□ 1.48
LTBP3-210ENST00000528516 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.27■■□□□ 1.481e-6■□□□□ 10.2
LTBP3-210ENST00000528516 RAB3GAP2Q9H2M9 1393 aa24.26■■□□□ 1.47
LTBP3-210ENST00000528516 ZBTB47Q9UFB7 747 aaPredicted RBP24.25■■□□□ 1.47
LTBP3-210ENST00000528516 KIF21BO75037 1637 aa24.24■■□□□ 1.47
LTBP3-210ENST00000528516 TOPBP1Q92547 1522 aa24.24■■□□□ 1.47
LTBP3-210ENST00000528516 PRXQ9BXM0 1461 aa24.22■■□□□ 1.47
LTBP3-210ENST00000528516 PAK3O75914 559 aaPredicted RBP24.22■■□□□ 1.47
LTBP3-210ENST00000528516 EIF5BO60841 1220 aaKnown RBP24.21■■□□□ 1.47
LTBP3-210ENST00000528516 POLA1P09884 1462 aaPredicted RBP24.2■■□□□ 1.47
LTBP3-210ENST00000528516 ERCC6Q03468 1493 aa24.2■■□□□ 1.46
LTBP3-210ENST00000528516 FOXD1Q16676 465 aa24.19■■□□□ 1.46
LTBP3-210ENST00000528516 IL27Q8NEV9 243 aa24.16■■□□□ 1.46
LTBP3-210ENST00000528516 ERICH6BQ5W0A0 696 aa24.12■■□□□ 1.45
LTBP3-210ENST00000528516 TMC1Q8TDI8 760 aa24.12■■□□□ 1.45
LTBP3-210ENST00000528516 RGL3Q3MIN7 710 aa24.11■■□□□ 1.45
LTBP3-210ENST00000528516 URB2Q14146 1524 aaKnown RBP24.11■■□□□ 1.45
LTBP3-210ENST00000528516 LAMC3Q9Y6N6 1575 aa24.09■■□□□ 1.45
LTBP3-210ENST00000528516 EIF4G2P78344 907 aaKnown RBP eCLIP24.09■■□□□ 1.45
LTBP3-210ENST00000528516 DNMBPQ6XZF7 1577 aa24.09■■□□□ 1.45
LTBP3-210ENST00000528516 WDR97A6NE52 1622 aa24.08■■□□□ 1.44
LTBP3-210ENST00000528516 LAS1LQ9Y4W2 734 aaKnown RBP24.05■■□□□ 1.44
LTBP3-210ENST00000528516 AQRO60306 1485 aaKnown RBP eCLIP24.04■■□□□ 1.442e-7■■■■□ 23.4
LTBP3-210ENST00000528516 SETD5Q9C0A6 1442 aa24.04■■□□□ 1.44
LTBP3-210ENST00000528516 ARAP1Q96P48 1450 aa24.03■■□□□ 1.44
LTBP3-210ENST00000528516 ERICH3Q5RHP9 1530 aa24.02■■□□□ 1.44
LTBP3-210ENST00000528516 CHGAP10645 457 aaKnown RBP24.01■■□□□ 1.43
LTBP3-210ENST00000528516 IPO9Q96P70 1041 aaKnown RBP24.01■■□□□ 1.43
LTBP3-210ENST00000528516 GAPVD1Q14C86 1478 aa24■■□□□ 1.43
LTBP3-210ENST00000528516 NEFMP07197 916 aa23.99■■□□□ 1.43
LTBP3-210ENST00000528516 CHMP7Q8WUX9 453 aaPredicted RBP23.99■■□□□ 1.43
LTBP3-210ENST00000528516 RRBP1Q9P2E9 1410 aaKnown RBP23.98■■□□□ 1.43
LTBP3-210ENST00000528516 FHOD3Q2V2M9 1422 aa23.98■■□□□ 1.43
LTBP3-210ENST00000528516 ARHGAP35Q9NRY4 1499 aa23.95■■□□□ 1.42
LTBP3-210ENST00000528516 PRDM2Q13029 1718 aa23.95■■□□□ 1.42
LTBP3-210ENST00000528516 ABCA10Q8WWZ4 1543 aa23.94■■□□□ 1.42
LTBP3-210ENST00000528516 TIMELESSQ9UNS1 1208 aa23.94■■□□□ 1.42
LTBP3-210ENST00000528516 CANXP27824 592 aaKnown RBP23.91■■□□□ 1.42
LTBP3-210ENST00000528516 KIF21AQ7Z4S6 1674 aa23.89■■□□□ 1.41
LTBP3-210ENST00000528516 TSPY4P0CV99 314 aa23.88■■□□□ 1.41
LTBP3-210ENST00000528516 TSPY10P0CW01 314 aa23.88■■□□□ 1.41
LTBP3-210ENST00000528516 MAPKBP1O60336 1514 aa23.87■■□□□ 1.41
LTBP3-210ENST00000528516 MRC2Q9UBG0 1479 aa23.86■■□□□ 1.41
LTBP3-210ENST00000528516 CCDC184Q52MB2 194 aa23.84■■□□□ 1.41
LTBP3-210ENST00000528516 CFDP1Q9UEE9 299 aaPredicted RBP23.82■■□□□ 1.4
LTBP3-210ENST00000528516 HSPA5P11021 654 aaKnown RBP23.81■■□□□ 1.4
LTBP3-210ENST00000528516 ARXQ96QS3 562 aa23.79■■□□□ 1.4
LTBP3-210ENST00000528516 ZNF608Q9ULD9 1512 aaPredicted RBP23.77■■□□□ 1.4
LTBP3-210ENST00000528516 FHAD1B1AJZ9 1412 aa23.77■■□□□ 1.4
LTBP3-210ENST00000528516 CARD11Q9BXL7 1154 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms