RNA–Protein interactions for RNA: ENST00000524652.1

CSDE1-208, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-208ENST00000524652 DCBLD2Q96PD2 775 aa9.61□□□□□ -0.87
CSDE1-208ENST00000524652 POTEIP0CG38 1075 aa9.6□□□□□ -0.87
CSDE1-208ENST00000524652 NUBP1P53384 320 aa9.59□□□□□ -0.87
CSDE1-208ENST00000524652 MS4A3Q96HJ5 214 aa9.56□□□□□ -0.88
CSDE1-208ENST00000524652 FAM212AQ96EL1 285 aa9.55□□□□□ -0.88
CSDE1-208ENST00000524652 KIF12Q96FN5 646 aa9.54□□□□□ -0.88
CSDE1-208ENST00000524652 MAP3K13O43283 966 aa9.49□□□□□ -0.89
CSDE1-208ENST00000524652 KLHL34Q8N239 644 aa9.49□□□□□ -0.89
CSDE1-208ENST00000524652 SGIP1Q9BQI5 828 aa9.49□□□□□ -0.89
CSDE1-208ENST00000524652 ASTLQ6HA08 431 aaPredicted RBP9.48□□□□□ -0.89
CSDE1-208ENST00000524652 LHX8Q68G74 356 aa9.47□□□□□ -0.89
CSDE1-208ENST00000524652 ATMINO43313 823 aaPredicted RBP9.44□□□□□ -0.9
CSDE1-208ENST00000524652 DCAF8Q5TAQ9 597 aa9.44□□□□□ -0.9
CSDE1-208ENST00000524652 IFNLR1Q8IU57 520 aaPredicted RBP9.44□□□□□ -0.9
CSDE1-208ENST00000524652 TIE1P35590 1138 aa9.43□□□□□ -0.9
CSDE1-208ENST00000524652 PCDHB13Q9Y5F0 798 aa9.43□□□□□ -0.9
CSDE1-208ENST00000524652 GSE1Q14687 1217 aa9.42□□□□□ -0.9
CSDE1-208ENST00000524652 PELP1Q8IZL8 1130 aaKnown RBP9.4□□□□□ -0.9
CSDE1-208ENST00000524652 TRPC6Q9Y210 931 aa9.4□□□□□ -0.9
CSDE1-208ENST00000524652 SLC39A7Q92504 469 aa9.39□□□□□ -0.91
CSDE1-208ENST00000524652 SPOCK2Q92563 424 aa9.39□□□□□ -0.91
CSDE1-208ENST00000524652 BMP2KQ9NSY1 1161 aaPredicted RBP9.39□□□□□ -0.91
CSDE1-208ENST00000524652 ATN1P54259 1190 aaPredicted RBP9.38□□□□□ -0.91
CSDE1-208ENST00000524652 IFNL1Q8IU54 200 aa9.38□□□□□ -0.91
CSDE1-208ENST00000524652 C7P10643 843 aa9.37□□□□□ -0.91
CSDE1-208ENST00000524652 PYGBP11216 843 aa9.37□□□□□ -0.91
CSDE1-208ENST00000524652 METRNQ9UJH8 293 aa9.36□□□□□ -0.91
CSDE1-208ENST00000524652 TTLL13PA6NNM8 815 aa9.35□□□□□ -0.91
CSDE1-208ENST00000524652 CHRM1P11229 460 aaPredicted RBP9.32□□□□□ -0.92
CSDE1-208ENST00000524652 ZNF467Q7Z7K2 595 aaPredicted RBP9.3□□□□□ -0.92
CSDE1-208ENST00000524652 TRIM35Q9UPQ4 493 aa9.3□□□□□ -0.92
CSDE1-208ENST00000524652 POTEB2H3BUK9 544 aa9.29□□□□□ -0.92
CSDE1-208ENST00000524652 IER5LQ5T953 404 aa9.28□□□□□ -0.92
CSDE1-208ENST00000524652 TMEM106CQ9BVX2 250 aa9.28□□□□□ -0.92
CSDE1-208ENST00000524652 CIZ1Q9ULV3 898 aaPredicted RBP9.28□□□□□ -0.92
CSDE1-208ENST00000524652 PCDHB8Q9UN66 801 aa9.27□□□□□ -0.93
CSDE1-208ENST00000524652 TRIM41Q8WV44 630 aa9.24□□□□□ -0.93
CSDE1-208ENST00000524652 POTEFA5A3E0 1075 aa9.23□□□□□ -0.93
CSDE1-208ENST00000524652 OTUD5Q96G74 571 aa9.23□□□□□ -0.93
CSDE1-208ENST00000524652 SEC24BO95487 1268 aa9.22□□□□□ -0.93
CSDE1-208ENST00000524652 MAMSTRQ6ZN01 415 aa9.2□□□□□ -0.94
CSDE1-208ENST00000524652 POTEJP0CG39 1038 aa9.19□□□□□ -0.94
CSDE1-208ENST00000524652 COLQQ9Y215 455 aaPredicted RBP9.19□□□□□ -0.94
CSDE1-208ENST00000524652 PSEN1P49768 467 aa9.17□□□□□ -0.94
CSDE1-208ENST00000524652 PDAP1Q13442 181 aaKnown RBP9.17□□□□□ -0.94
CSDE1-208ENST00000524652 IRX5P78411 483 aaPredicted RBP9.16□□□□□ -0.94
CSDE1-208ENST00000524652 SCUBE2Q9NQ36 999 aa9.16□□□□□ -0.94
CSDE1-208ENST00000524652 PLCG2P16885 1265 aa9.15□□□□□ -0.94
CSDE1-208ENST00000524652 GOLGA2Q08379 1002 aa9.14□□□□□ -0.95
CSDE1-208ENST00000524652 OCEL1Q9H607 264 aa9.12□□□□□ -0.95
CSDE1-208ENST00000524652 MKRN3Q13064 507 aaKnown RBP9.11□□□□□ -0.95
CSDE1-208ENST00000524652 RIOK3O14730 519 aaKnown RBP9.07□□□□□ -0.96
CSDE1-208ENST00000524652 RNF25Q96BH1 459 aaPredicted RBP9.07□□□□□ -0.96
CSDE1-208ENST00000524652 PDCD7Q8N8D1 485 aaKnown RBP9.06□□□□□ -0.96
CSDE1-208ENST00000524652 CABP2Q9NPB3 220 aa9.06□□□□□ -0.96
CSDE1-208ENST00000524652 ILDR1Q86SU0 546 aaPredicted RBP9.04□□□□□ -0.96
CSDE1-208ENST00000524652 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.04□□□□□ -0.968e-15■□□□□ 10.2
CSDE1-208ENST00000524652 VGFO15240 615 aaPredicted RBP9.03□□□□□ -0.96
CSDE1-208ENST00000524652 TAOK2Q9UL54 1235 aa9.01□□□□□ -0.97
CSDE1-208ENST00000524652 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.99□□□□□ -0.97
CSDE1-208ENST00000524652 PKD2Q13563 968 aa8.99□□□□□ -0.97
CSDE1-208ENST00000524652 L3MBTL3Q96JM7 780 aaPredicted RBP8.99□□□□□ -0.97
CSDE1-208ENST00000524652 ZFP91Q96JP5 570 aaPredicted RBP8.99□□□□□ -0.97
CSDE1-208ENST00000524652 ECM2O94769 699 aaPredicted RBP8.98□□□□□ -0.97
CSDE1-208ENST00000524652 SLAIN1Q8ND83 568 aa8.98□□□□□ -0.97
CSDE1-208ENST00000524652 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.97□□□□□ -0.97
CSDE1-208ENST00000524652 EFCAB3Q8N7B9 438 aa8.96□□□□□ -0.98
CSDE1-208ENST00000524652 C3orf67Q6ZVT6 689 aa8.95□□□□□ -0.98
CSDE1-208ENST00000524652 SOX12O15370 315 aa8.93□□□□□ -0.98
CSDE1-208ENST00000524652 POTEMA6NI47 508 aa8.91□□□□□ -0.98
CSDE1-208ENST00000524652 LCE2DQ5TA82 110 aaPredicted RBP8.91□□□□□ -0.98
CSDE1-208ENST00000524652 DPY19L2Q6NUT2 758 aa8.91□□□□□ -0.98
CSDE1-208ENST00000524652 G3V3G9 751 aa8.9□□□□□ -0.98
CSDE1-208ENST00000524652 RGL2O15211 777 aa8.9□□□□□ -0.98
CSDE1-208ENST00000524652 FAM163AQ96GL9 167 aaPredicted RBP8.9□□□□□ -0.98
CSDE1-208ENST00000524652 BCL11BQ9C0K0 894 aaPredicted RBP8.9□□□□□ -0.98
CSDE1-208ENST00000524652 BOLA1Q9Y3E2 137 aa8.9□□□□□ -0.98
CSDE1-208ENST00000524652 STK25O00506 426 aa8.88□□□□□ -0.99
CSDE1-208ENST00000524652 POTEGQ6S5H5 508 aa8.88□□□□□ -0.99
CSDE1-208ENST00000524652 STK24Q9Y6E0 443 aa8.88□□□□□ -0.99
CSDE1-208ENST00000524652 SNPHO15079 494 aa8.86□□□□□ -0.99
CSDE1-208ENST00000524652 TMEM121BQ9BXQ6 578 aaPredicted RBP8.86□□□□□ -0.99
CSDE1-208ENST00000524652 PHF8Q9UPP1 1060 aa8.85□□□□□ -0.99
CSDE1-208ENST00000524652 MS4A4AQ96JQ5 239 aa8.84□□□□□ -0.99
CSDE1-208ENST00000524652 NLRP6P59044 892 aa8.83□□□□□ -1
CSDE1-208ENST00000524652 ST18O60284 1047 aa8.82□□□□□ -1
CSDE1-208ENST00000524652 MICALL2Q8IY33 904 aa8.81□□□□□ -1
CSDE1-208ENST00000524652 FBXO22Q8NEZ5 403 aa8.81□□□□□ -1
CSDE1-208ENST00000524652 PCDH10Q9P2E7 1040 aa8.81□□□□□ -1
CSDE1-208ENST00000524652 MFRPQ9BY79 579 aa8.8□□□□□ -1
CSDE1-208ENST00000524652 HS6ST3Q8IZP7 471 aa8.76□□□□□ -1.01
CSDE1-208ENST00000524652 TMEM92Q6UXU6 159 aa8.72□□□□□ -1.01
CSDE1-208ENST00000524652 HOXB3P14651 431 aaPredicted RBP8.7□□□□□ -1.02
CSDE1-208ENST00000524652 DOK7Q18PE1 504 aa8.7□□□□□ -1.02
CSDE1-208ENST00000524652 CHGAP10645 457 aaKnown RBP8.69□□□□□ -1.02
CSDE1-208ENST00000524652 DNAJC5Q9H3Z4 198 aa8.69□□□□□ -1.02
CSDE1-208ENST00000524652 RIMBP2O15034 1052 aa8.67□□□□□ -1.02
CSDE1-208ENST00000524652 CDAN1Q8IWY9 1227 aa8.67□□□□□ -1.02
CSDE1-208ENST00000524652 ZNF710Q8N1W2 664 aa8.67□□□□□ -1.02
CSDE1-208ENST00000524652 MARVELD3Q96A59 401 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms