RNA–Protein interactions for RNA: ENST00000520493.1

SQLE-204, Transcript of squalene epoxidase, humanhuman

TSL 3

Gene SQLE, Length 737 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-204ENST00000520493 C7P10643 843 aa13.49□□□□□ -0.25
SQLE-204ENST00000520493 MAMSTRQ6ZN01 415 aa13.49□□□□□ -0.25
SQLE-204ENST00000520493 NPM1P06748 294 aaKnown RBP eCLIP13.48□□□□□ -0.25
SQLE-204ENST00000520493 ASTLQ6HA08 431 aaPredicted RBP13.48□□□□□ -0.25
SQLE-204ENST00000520493 MS4A3Q96HJ5 214 aa13.48□□□□□ -0.25
SQLE-204ENST00000520493 ATMINO43313 823 aaPredicted RBP13.47□□□□□ -0.25
SQLE-204ENST00000520493 LCE2DQ5TA82 110 aaPredicted RBP13.47□□□□□ -0.25
SQLE-204ENST00000520493 SCUBE2Q9NQ36 999 aa13.41□□□□□ -0.26
SQLE-204ENST00000520493 MNX1P50219 401 aaPredicted RBP13.36□□□□□ -0.27
SQLE-204ENST00000520493 ATN1P54259 1190 aaPredicted RBP13.33□□□□□ -0.28
SQLE-204ENST00000520493 SPDYE4A6NLX3 237 aa13.3□□□□□ -0.28
SQLE-204ENST00000520493 TSPYL2Q9H2G4 693 aaPredicted RBP13.29□□□□□ -0.28
SQLE-204ENST00000520493 CDAN1Q8IWY9 1227 aa13.26□□□□□ -0.29
SQLE-204ENST00000520493 POTEFA5A3E0 1075 aa13.23□□□□□ -0.29
SQLE-204ENST00000520493 BMP2KQ9NSY1 1161 aaPredicted RBP13.19□□□□□ -0.3
SQLE-204ENST00000520493 TRPC6Q9Y210 931 aa13.16□□□□□ -0.3
SQLE-204ENST00000520493 CCDC61Q9Y6R9 512 aa13.16□□□□□ -0.3
SQLE-204ENST00000520493 KIF12Q96FN5 646 aa13.15□□□□□ -0.3
SQLE-204ENST00000520493 SEC24BO95487 1268 aa13.12□□□□□ -0.31
SQLE-204ENST00000520493 COLQQ9Y215 455 aaPredicted RBP13.1□□□□□ -0.31
SQLE-204ENST00000520493 MAP3K13O43283 966 aa13.06□□□□□ -0.32
SQLE-204ENST00000520493 TIE1P35590 1138 aa13.06□□□□□ -0.32
SQLE-204ENST00000520493 ST18O60284 1047 aa13.02□□□□□ -0.33
SQLE-204ENST00000520493 TTLL13PA6NNM8 815 aa13.01□□□□□ -0.33
SQLE-204ENST00000520493 SLAIN1Q8ND83 568 aa13.01□□□□□ -0.33
SQLE-204ENST00000520493 MMRN1Q13201 1228 aa12.97□□□□□ -0.33
SQLE-204ENST00000520493 TRIM35Q9UPQ4 493 aa12.95□□□□□ -0.34
SQLE-204ENST00000520493 SPNS2Q8IVW8 549 aa12.92□□□□□ -0.34
SQLE-204ENST00000520493 IER5LQ5T953 404 aa12.9□□□□□ -0.34
SQLE-204ENST00000520493 RASEFQ8IZ41 740 aa12.9□□□□□ -0.34
SQLE-204ENST00000520493 PLEKHG5O94827 1062 aa12.85□□□□□ -0.35
SQLE-204ENST00000520493 PCDHB13Q9Y5F0 798 aa12.84□□□□□ -0.35
SQLE-204ENST00000520493 MIER1Q8N108 512 aa12.82□□□□□ -0.36
SQLE-204ENST00000520493 PLCG2P16885 1265 aa12.81□□□□□ -0.36
SQLE-204ENST00000520493 MARVELD3Q96A59 401 aa12.78□□□□□ -0.36
SQLE-204ENST00000520493 SGIP1Q9BQI5 828 aa12.76□□□□□ -0.37
SQLE-204ENST00000520493 TMEM121BQ9BXQ6 578 aaPredicted RBP12.76□□□□□ -0.37
SQLE-204ENST00000520493 TMEM106CQ9BVX2 250 aa12.75□□□□□ -0.37
SQLE-204ENST00000520493 PROM2Q8N271 834 aa12.74□□□□□ -0.37
SQLE-204ENST00000520493 IFNL1Q8IU54 200 aa12.73□□□□□ -0.37
SQLE-204ENST00000520493 SNPHO15079 494 aa12.71□□□□□ -0.37
SQLE-204ENST00000520493 IRX5P78411 483 aaPredicted RBP12.68□□□□□ -0.38
SQLE-204ENST00000520493 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.66□□□□□ -0.38
SQLE-204ENST00000520493 PLCD3Q8N3E9 789 aa12.63□□□□□ -0.39
SQLE-204ENST00000520493 OCEL1Q9H607 264 aa12.63□□□□□ -0.39
SQLE-204ENST00000520493 FKBP8Q14318 412 aa12.62□□□□□ -0.39
SQLE-204ENST00000520493 EMP3P54852 163 aa12.59□□□□□ -0.39
SQLE-204ENST00000520493 NUBP1P53384 320 aa12.57□□□□□ -0.4
SQLE-204ENST00000520493 FAM205CA6NFA0 338 aa12.53□□□□□ -0.4
SQLE-204ENST00000520493 FAM212AQ96EL1 285 aa12.53□□□□□ -0.4
SQLE-204ENST00000520493 HS3ST6Q96QI5 342 aa12.53□□□□□ -0.4
SQLE-204ENST00000520493 KRTAP3-3Q9BYR6 98 aa12.53□□□□□ -0.4
SQLE-204ENST00000520493 KRTAP3-2Q9BYR7 98 aa12.53□□□□□ -0.4
SQLE-204ENST00000520493 POTEB3A0JP26 581 aa12.51□□□□□ -0.41
SQLE-204ENST00000520493 POTEBQ6S5H4 581 aa12.51□□□□□ -0.41
SQLE-204ENST00000520493 ZBTB47Q9UFB7 747 aaPredicted RBP12.5□□□□□ -0.41
SQLE-204ENST00000520493 C3orf67Q6ZVT6 689 aa12.47□□□□□ -0.41
SQLE-204ENST00000520493 PYGBP11216 843 aa12.43□□□□□ -0.42
SQLE-204ENST00000520493 PCDHB8Q9UN66 801 aa12.42□□□□□ -0.42
SQLE-204ENST00000520493 DCAF8Q5TAQ9 597 aa12.39□□□□□ -0.43
SQLE-204ENST00000520493 PDCD7Q8N8D1 485 aaKnown RBP12.38□□□□□ -0.43
SQLE-204ENST00000520493 L3MBTL3Q96JM7 780 aaPredicted RBP12.37□□□□□ -0.43
SQLE-204ENST00000520493 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
SQLE-204ENST00000520493 FBXO3Q9UK99 471 aa12.33□□□□□ -0.44
SQLE-204ENST00000520493 MKRN3Q13064 507 aaKnown RBP12.32□□□□□ -0.44
SQLE-204ENST00000520493 RNF166Q96A37 237 aaPredicted RBP12.29□□□□□ -0.44
SQLE-204ENST00000520493 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.27□□□□□ -0.45
SQLE-204ENST00000520493 ERBB3P21860 1342 aa12.22□□□□□ -0.45
SQLE-204ENST00000520493 ZNF710Q8N1W2 664 aa12.2□□□□□ -0.46
SQLE-204ENST00000520493 HOXB3P14651 431 aaPredicted RBP12.19□□□□□ -0.46
SQLE-204ENST00000520493 MYT1LQ9UL68 1186 aa12.17□□□□□ -0.46
SQLE-204ENST00000520493 HOXB1P14653 301 aaPredicted RBP12.16□□□□□ -0.46
SQLE-204ENST00000520493 DPY19L2Q6NUT2 758 aa12.16□□□□□ -0.46
SQLE-204ENST00000520493 ZNF467Q7Z7K2 595 aaPredicted RBP12.16□□□□□ -0.46
SQLE-204ENST00000520493 G3V3G9 751 aa12.14□□□□□ -0.47
SQLE-204ENST00000520493 PSEN1P49768 467 aa12.12□□□□□ -0.47
SQLE-204ENST00000520493 VASPP50552 380 aaPredicted RBP12.1□□□□□ -0.47
SQLE-204ENST00000520493 VARS2Q5ST30 1063 aaKnown RBP12.1□□□□□ -0.47
SQLE-204ENST00000520493 BOLA1Q9Y3E2 137 aa12.09□□□□□ -0.47
SQLE-204ENST00000520493 DOK7Q18PE1 504 aa12.08□□□□□ -0.48
SQLE-204ENST00000520493 GSE1Q14687 1217 aa12.04□□□□□ -0.48
SQLE-204ENST00000520493 ILDR1Q86SU0 546 aaPredicted RBP12.04□□□□□ -0.48
SQLE-204ENST00000520493 RIMBP2O15034 1052 aa12.02□□□□□ -0.49
SQLE-204ENST00000520493 KLHL34Q8N239 644 aa12□□□□□ -0.49
SQLE-204ENST00000520493 CABP2Q9NPB3 220 aa12□□□□□ -0.49
SQLE-204ENST00000520493 ZNF687Q8N1G0 1237 aa11.99□□□□□ -0.49
SQLE-204ENST00000520493 CHRM1P11229 460 aaPredicted RBP11.96□□□□□ -0.49
SQLE-204ENST00000520493 PDAP1Q13442 181 aaKnown RBP11.96□□□□□ -0.49
SQLE-204ENST00000520493 ANKRD13DQ6ZTN6 518 aa11.95□□□□□ -0.5
SQLE-204ENST00000520493 PTGER2P43116 358 aa11.94□□□□□ -0.5
SQLE-204ENST00000520493 ZSWIM6Q9HCJ5 1215 aa11.86□□□□□ -0.51
SQLE-204ENST00000520493 GPR153Q6NV75 609 aa11.85□□□□□ -0.51
SQLE-204ENST00000520493 IFNLR1Q8IU57 520 aaPredicted RBP11.85□□□□□ -0.51
SQLE-204ENST00000520493 SPOCK2Q92563 424 aa11.84□□□□□ -0.51
SQLE-204ENST00000520493 PLA2G2EQ9NZK7 142 aa11.83□□□□□ -0.52
SQLE-204ENST00000520493 TMEM92Q6UXU6 159 aa11.82□□□□□ -0.52
SQLE-204ENST00000520493 ARSIQ5FYB1 569 aa11.79□□□□□ -0.52
SQLE-204ENST00000520493 LSM11P83369 360 aaKnown RBP eCLIP11.77□□□□□ -0.53
SQLE-204ENST00000520493 MICALL2Q8IY33 904 aa11.76□□□□□ -0.53
SQLE-204ENST00000520493 EFCAB3Q8N7B9 438 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 111 ms