RNA–Protein interactions for RNA: ENST00000512275.5

RFC1-213, Transcript of replication factor C subunit 1, humanhuman

TSL 3

Gene RFC1, Length 841 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC1-213ENST00000512275 POTEIP0CG38 1075 aa14.97□□□□□ -0.01
RFC1-213ENST00000512275 DCAF8L2P0C7V8 631 aa14.96□□□□□ -0.01
RFC1-213ENST00000512275 PLCD3Q8N3E9 789 aa14.96□□□□□ -0.01
RFC1-213ENST00000512275 PAK3O75914 559 aaPredicted RBP14.93□□□□□ -0.02
RFC1-213ENST00000512275 MIER1Q8N108 512 aa14.89□□□□□ -0.03
RFC1-213ENST00000512275 ECM2O94769 699 aaPredicted RBP14.88□□□□□ -0.03
RFC1-213ENST00000512275 PHF12Q96QT6 1004 aa14.86□□□□□ -0.03
RFC1-213ENST00000512275 GALR2O43603 387 aaPredicted RBP14.83□□□□□ -0.04
RFC1-213ENST00000512275 DCBLD2Q96PD2 775 aa14.82□□□□□ -0.04
RFC1-213ENST00000512275 PLEKHG5O94827 1062 aa14.81□□□□□ -0.04
RFC1-213ENST00000512275 HAP1P54257 671 aaPredicted RBP14.78□□□□□ -0.04
RFC1-213ENST00000512275 RGL2O15211 777 aa14.77□□□□□ -0.05
RFC1-213ENST00000512275 BBXQ8WY36 941 aaPredicted RBP14.76□□□□□ -0.05
RFC1-213ENST00000512275 TSPYL2Q9H2G4 693 aaPredicted RBP14.76□□□□□ -0.05
RFC1-213ENST00000512275 ZBTB47Q9UFB7 747 aaPredicted RBP14.76□□□□□ -0.05
RFC1-213ENST00000512275 CCDC61Q9Y6R9 512 aa14.69□□□□□ -0.06
RFC1-213ENST00000512275 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.67□□□□□ -0.06
RFC1-213ENST00000512275 RASEFQ8IZ41 740 aa14.66□□□□□ -0.06
RFC1-213ENST00000512275 MS4A3Q96HJ5 214 aa14.66□□□□□ -0.06
RFC1-213ENST00000512275 CIZ1Q9ULV3 898 aaPredicted RBP14.65□□□□□ -0.06
RFC1-213ENST00000512275 VSIG10Q8N0Z9 540 aa14.64□□□□□ -0.07
RFC1-213ENST00000512275 TRIM41Q8WV44 630 aa14.62□□□□□ -0.07
RFC1-213ENST00000512275 KIF12Q96FN5 646 aa14.58□□□□□ -0.08
RFC1-213ENST00000512275 PAXIP1Q6ZW49 1069 aaPredicted RBP14.57□□□□□ -0.08
RFC1-213ENST00000512275 NUBP1P53384 320 aa14.55□□□□□ -0.08
RFC1-213ENST00000512275 PELP1Q8IZL8 1130 aaKnown RBP14.53□□□□□ -0.08
RFC1-213ENST00000512275 ASTLQ6HA08 431 aaPredicted RBP14.52□□□□□ -0.09
RFC1-213ENST00000512275 MAP3K13O43283 966 aa14.51□□□□□ -0.09
RFC1-213ENST00000512275 GSE1Q14687 1217 aa14.51□□□□□ -0.09
RFC1-213ENST00000512275 CFAP44Q96MT7 982 aa14.51□□□□□ -0.09
RFC1-213ENST00000512275 ATMINO43313 823 aaPredicted RBP14.5□□□□□ -0.09
RFC1-213ENST00000512275 CHGAP10645 457 aaKnown RBP14.5□□□□□ -0.09
RFC1-213ENST00000512275 KDM2AQ9Y2K7 1162 aa14.5□□□□□ -0.09
RFC1-213ENST00000512275 RNF25Q96BH1 459 aaPredicted RBP14.49□□□□□ -0.09
RFC1-213ENST00000512275 POTEB2H3BUK9 544 aa14.48□□□□□ -0.09
RFC1-213ENST00000512275 SPRYD3Q8NCJ5 442 aa14.48□□□□□ -0.09
RFC1-213ENST00000512275 HS6ST3Q8IZP7 471 aa14.47□□□□□ -0.09
RFC1-213ENST00000512275 BCANQ96GW7 911 aa14.46□□□□□ -0.09
RFC1-213ENST00000512275 OTUD5Q96G74 571 aa14.45□□□□□ -0.1
RFC1-213ENST00000512275 FAM212AQ96EL1 285 aa14.44□□□□□ -0.1
RFC1-213ENST00000512275 TRPC6Q9Y210 931 aa14.44□□□□□ -0.1
RFC1-213ENST00000512275 DNAJC5Q9H3Z4 198 aa14.43□□□□□ -0.1
RFC1-213ENST00000512275 ATN1P54259 1190 aaPredicted RBP14.4□□□□□ -0.1
RFC1-213ENST00000512275 BMP2KQ9NSY1 1161 aaPredicted RBP14.4□□□□□ -0.1
RFC1-213ENST00000512275 METRNQ9UJH8 293 aa14.4□□□□□ -0.1
RFC1-213ENST00000512275 SLC39A7Q92504 469 aa14.39□□□□□ -0.11
RFC1-213ENST00000512275 TSHZ2Q9NRE2 1034 aa14.38□□□□□ -0.11
RFC1-213ENST00000512275 C7P10643 843 aa14.37□□□□□ -0.11
RFC1-213ENST00000512275 DCAF8Q5TAQ9 597 aa14.37□□□□□ -0.11
RFC1-213ENST00000512275 SGIP1Q9BQI5 828 aa14.37□□□□□ -0.11
RFC1-213ENST00000512275 PCDHB13Q9Y5F0 798 aa14.37□□□□□ -0.11
RFC1-213ENST00000512275 TIE1P35590 1138 aa14.36□□□□□ -0.11
RFC1-213ENST00000512275 RIOK3O14730 519 aaKnown RBP14.34□□□□□ -0.11
RFC1-213ENST00000512275 PLSCR2Q9NRY7 297 aa14.34□□□□□ -0.11
RFC1-213ENST00000512275 CHRM1P11229 460 aaPredicted RBP14.31□□□□□ -0.12
RFC1-213ENST00000512275 IFNL1Q8IU54 200 aa14.31□□□□□ -0.12
RFC1-213ENST00000512275 TTLL13PA6NNM8 815 aa14.3□□□□□ -0.12
RFC1-213ENST00000512275 TAOK2Q9UL54 1235 aa14.29□□□□□ -0.12
RFC1-213ENST00000512275 NKX1-1Q15270 411 aaPredicted RBP14.27□□□□□ -0.13
RFC1-213ENST00000512275 PYGBP11216 843 aa14.26□□□□□ -0.13
RFC1-213ENST00000512275 VGFO15240 615 aaPredicted RBP14.24□□□□□ -0.13
RFC1-213ENST00000512275 POTEJP0CG39 1038 aa14.22□□□□□ -0.13
RFC1-213ENST00000512275 POTEFA5A3E0 1075 aa14.21□□□□□ -0.13
RFC1-213ENST00000512275 TRIM35Q9UPQ4 493 aa14.21□□□□□ -0.13
RFC1-213ENST00000512275 STK25O00506 426 aa14.18□□□□□ -0.14
RFC1-213ENST00000512275 GTPBP6O43824 516 aaPredicted RBP14.18□□□□□ -0.14
RFC1-213ENST00000512275 TMEM106CQ9BVX2 250 aa14.18□□□□□ -0.14
RFC1-213ENST00000512275 POTEMA6NI47 508 aa14.17□□□□□ -0.14
RFC1-213ENST00000512275 PRKCSHP14314 528 aaPredicted RBP14.15□□□□□ -0.14
RFC1-213ENST00000512275 COLQQ9Y215 455 aaPredicted RBP14.15□□□□□ -0.14
RFC1-213ENST00000512275 IER5LQ5T953 404 aa14.14□□□□□ -0.15
RFC1-213ENST00000512275 PCDHB8Q9UN66 801 aa14.14□□□□□ -0.15
RFC1-213ENST00000512275 SEC24BO95487 1268 aa14.13□□□□□ -0.15
RFC1-213ENST00000512275 MAMSTRQ6ZN01 415 aa14.13□□□□□ -0.15
RFC1-213ENST00000512275 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.12□□□□□ -0.15
RFC1-213ENST00000512275 POTEGQ6S5H5 508 aa14.12□□□□□ -0.15
RFC1-213ENST00000512275 ZFP91Q96JP5 570 aaPredicted RBP14.12□□□□□ -0.15
RFC1-213ENST00000512275 CCDC180Q9P1Z9 1646 aa14.09□□□□□ -0.15
RFC1-213ENST00000512275 BCL11BQ9C0K0 894 aaPredicted RBP14.09□□□□□ -0.15
RFC1-213ENST00000512275 SCUBE2Q9NQ36 999 aa14.07□□□□□ -0.16
RFC1-213ENST00000512275 STK24Q9Y6E0 443 aa14.06□□□□□ -0.16
RFC1-213ENST00000512275 ZNF467Q7Z7K2 595 aaPredicted RBP14.05□□□□□ -0.16
RFC1-213ENST00000512275 LCE2DQ5TA82 110 aaPredicted RBP14.03□□□□□ -0.16
RFC1-213ENST00000512275 TPRNQ4KMQ1 711 aa14.01□□□□□ -0.17
RFC1-213ENST00000512275 RYDENQ9NUL5 291 aaKnown RBP14□□□□□ -0.17
RFC1-213ENST00000512275 PLCG2P16885 1265 aa13.99□□□□□ -0.17
RFC1-213ENST00000512275 IRX5P78411 483 aaPredicted RBP13.99□□□□□ -0.17
RFC1-213ENST00000512275 PSEN1P49768 467 aa13.93□□□□□ -0.18
RFC1-213ENST00000512275 NBR1Q14596 966 aa13.93□□□□□ -0.18
RFC1-213ENST00000512275 OCEL1Q9H607 264 aa13.92□□□□□ -0.18
RFC1-213ENST00000512275 PDAP1Q13442 181 aaKnown RBP13.89□□□□□ -0.19
RFC1-213ENST00000512275 PCDH10Q9P2E7 1040 aa13.89□□□□□ -0.19
RFC1-213ENST00000512275 GOLGA2Q08379 1002 aa13.87□□□□□ -0.19
RFC1-213ENST00000512275 FAM163AQ96GL9 167 aaPredicted RBP13.86□□□□□ -0.19
RFC1-213ENST00000512275 MKRN3Q13064 507 aaKnown RBP13.85□□□□□ -0.19
RFC1-213ENST00000512275 PDCD7Q8N8D1 485 aaKnown RBP13.82□□□□□ -0.2
RFC1-213ENST00000512275 SLAIN1Q8ND83 568 aa13.82□□□□□ -0.2
RFC1-213ENST00000512275 MFRPQ9BY79 579 aa13.77□□□□□ -0.21
RFC1-213ENST00000512275 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.77□□□□□ -0.219e-8■■■■□ 22.8
RFC1-213ENST00000512275 CADPS2Q86UW7 1296 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms