RNA–Protein interactions for RNA: ENST00000498801.5

GARNL3-222, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-222	ENST00000498801	PITPNM1	O00562	1244 aa		13.92	□□□□□ -0.18
GARNL3-222	ENST00000498801	NUBP1	P53384	320 aa		13.89	□□□□□ -0.19
GARNL3-222	ENST00000498801	MNX1	P50219	401 aa	Predicted RBP	13.87	□□□□□ -0.19
GARNL3-222	ENST00000498801	TRIM41	Q8WV44	630 aa		13.87	□□□□□ -0.19
GARNL3-222	ENST00000498801	GSE1	Q14687	1217 aa		13.85	□□□□□ -0.19
GARNL3-222	ENST00000498801	CC2D2A	Q9P2K1	1620 aa		13.83	□□□□□ -0.2
GARNL3-222	ENST00000498801	NPM1	P06748	294 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
GARNL3-222	ENST00000498801	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.79	□□□□□ -0.2
GARNL3-222	ENST00000498801	BBX	Q8WY36	941 aa	Predicted RBP	13.79	□□□□□ -0.2
GARNL3-222	ENST00000498801	CECR2	Q9BXF3	1484 aa		13.79	□□□□□ -0.2
GARNL3-222	ENST00000498801	SMARCA4	P51532	1647 aa		13.77	□□□□□ -0.21
GARNL3-222	ENST00000498801	DCAF8	Q5TAQ9	597 aa		13.77	□□□□□ -0.21
GARNL3-222	ENST00000498801	FAM212A	Q96EL1	285 aa		13.76	□□□□□ -0.21
GARNL3-222	ENST00000498801	PEG3	Q9GZU2	1588 aa		13.75	□□□□□ -0.21
GARNL3-222	ENST00000498801	HAP1	P54257	671 aa	Predicted RBP	13.75	□□□□□ -0.21
GARNL3-222	ENST00000498801	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.75	□□□□□ -0.21
GARNL3-222	ENST00000498801	RASEF	Q8IZ41	740 aa		13.73	□□□□□ -0.21
GARNL3-222	ENST00000498801	RNF25	Q96BH1	459 aa	Predicted RBP	13.73	□□□□□ -0.21
GARNL3-222	ENST00000498801	NCAPD3	P42695	1498 aa		13.72	□□□□□ -0.21
GARNL3-222	ENST00000498801	CHGA	P10645	457 aa	Known RBP	13.7	□□□□□ -0.22
GARNL3-222	ENST00000498801	SMARCA2	P51531	1590 aa		13.7	□□□□□ -0.22
GARNL3-222	ENST00000498801	ATAD2B	Q9ULI0	1458 aa		13.69	□□□□□ -0.22
GARNL3-222	ENST00000498801	HMGXB3	Q12766	1538 aa		13.69	□□□□□ -0.22
GARNL3-222	ENST00000498801	MROH2B	Q7Z745	1585 aa		13.66	□□□□□ -0.22
GARNL3-222	ENST00000498801	CHADL	Q6NUI6	762 aa		13.66	□□□□□ -0.22
GARNL3-222	ENST00000498801	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.66	□□□□□ -0.22
GARNL3-222	ENST00000498801	RIOK3	O14730	519 aa	Known RBP	13.63	□□□□□ -0.23
GARNL3-222	ENST00000498801	HS6ST3	Q8IZP7	471 aa		13.63	□□□□□ -0.23
GARNL3-222	ENST00000498801	CFAP44	Q96MT7	982 aa		13.62	□□□□□ -0.23
GARNL3-222	ENST00000498801	CHRM1	P11229	460 aa	Predicted RBP	13.61	□□□□□ -0.23
GARNL3-222	ENST00000498801	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.58	□□□□□ -0.24
GARNL3-222	ENST00000498801	SPRYD3	Q8NCJ5	442 aa		13.57	□□□□□ -0.24
GARNL3-222	ENST00000498801	TAOK2	Q9UL54	1235 aa		13.57	□□□□□ -0.24
GARNL3-222	ENST00000498801	RSF1	Q96T23	1441 aa	Predicted RBP	13.56	□□□□□ -0.24
GARNL3-222	ENST00000498801	PRKAR2A	P13861	404 aa	Known RBP	13.56	□□□□□ -0.24
GARNL3-222	ENST00000498801	PYGB	P11216	843 aa		13.55	□□□□□ -0.24
GARNL3-222	ENST00000498801	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.55	□□□□□ -0.24
GARNL3-222	ENST00000498801	VGF	O15240	615 aa	Predicted RBP	13.54	□□□□□ -0.24
GARNL3-222	ENST00000498801	FXR2	P51116	673 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
GARNL3-222	ENST00000498801	VSIG10	Q8N0Z9	540 aa		13.54	□□□□□ -0.24
GARNL3-222	ENST00000498801	DNAJC5	Q9H3Z4	198 aa		13.53	□□□□□ -0.24
GARNL3-222	ENST00000498801	TSPYL2	Q9H2G4	693 aa	Predicted RBP	13.5	□□□□□ -0.25
GARNL3-222	ENST00000498801	STK25	O00506	426 aa		13.48	□□□□□ -0.25
GARNL3-222	ENST00000498801	CHRDL2	Q6WN34	429 aa		13.48	□□□□□ -0.25
GARNL3-222	ENST00000498801	SGIP1	Q9BQI5	828 aa		13.47	□□□□□ -0.25
GARNL3-222	ENST00000498801	WIZ	O95785	1651 aa		13.46	□□□□□ -0.26
GARNL3-222	ENST00000498801	NKX1-1	Q15270	411 aa	Predicted RBP	13.45	□□□□□ -0.26
GARNL3-222	ENST00000498801	TOP2A	P11388	1531 aa	Known RBP	13.44	□□□□□ -0.26
GARNL3-222	ENST00000498801	ZFP91-CNTF	A0A0A6YYC7	529 aa	Predicted RBP	13.44	□□□□□ -0.26
GARNL3-222	ENST00000498801	ZFP91	Q96JP5	570 aa	Predicted RBP	13.44	□□□□□ -0.26
GARNL3-222	ENST00000498801	PIP4P2	Q8N4L2	257 aa		13.43	□□□□□ -0.26
GARNL3-222	ENST00000498801	TSHZ2	Q9NRE2	1034 aa		13.43	□□□□□ -0.26
GARNL3-222	ENST00000498801	KDM2A	Q9Y2K7	1162 aa		13.43	□□□□□ -0.26
GARNL3-222	ENST00000498801	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.4	□□□□□ -0.26
GARNL3-222	ENST00000498801	STK24	Q9Y6E0	443 aa		13.39	□□□□□ -0.27
GARNL3-222	ENST00000498801	CCDC61	Q9Y6R9	512 aa		13.39	□□□□□ -0.27
GARNL3-222	ENST00000498801	ZNF467	Q7Z7K2	595 aa	Predicted RBP	13.38	□□□□□ -0.27
GARNL3-222	ENST00000498801	GTPBP6	O43824	516 aa	Predicted RBP	13.34	□□□□□ -0.27
GARNL3-222	ENST00000498801	PAK3	O75914	559 aa	Predicted RBP	13.33	□□□□□ -0.28
GARNL3-222	ENST00000498801	LAMC3	Q9Y6N6	1575 aa		13.31	□□□□□ -0.28
GARNL3-222	ENST00000498801	PDAP1	Q13442	181 aa	Known RBP	13.3	□□□□□ -0.28
GARNL3-222	ENST00000498801	PCDHB8	Q9UN66	801 aa		13.3	□□□□□ -0.28
GARNL3-222	ENST00000498801	PCDHB13	Q9Y5F0	798 aa		13.3	□□□□□ -0.28
GARNL3-222	ENST00000498801	BCAN	Q96GW7	911 aa		13.29	□□□□□ -0.28
GARNL3-222	ENST00000498801	ZNF579	Q8NAF0	562 aa	Known RBP	13.28	□□□□□ -0.28
GARNL3-222	ENST00000498801	CADPS	Q9ULU8	1353 aa		13.26	□□□□□ -0.29
GARNL3-222	ENST00000498801	CFTR	P13569	1480 aa		13.25	□□□□□ -0.29
GARNL3-222	ENST00000498801	RYDEN	Q9NUL5	291 aa	Known RBP	13.24	□□□□□ -0.29
GARNL3-222	ENST00000498801	NES	P48681	1621 aa		13.22	□□□□□ -0.29
GARNL3-222	ENST00000498801	PSEN1	P49768	467 aa		13.22	□□□□□ -0.29
GARNL3-222	ENST00000498801	CCDC88B	A6NC98	1476 aa		13.22	□□□□□ -0.29
GARNL3-222	ENST00000498801	MAP3K13	O43283	966 aa		13.21	□□□□□ -0.29
GARNL3-222	ENST00000498801	IFNL1	Q8IU54	200 aa		13.21	□□□□□ -0.29
GARNL3-222	ENST00000498801	KIF12	Q96FN5	646 aa		13.21	□□□□□ -0.29
GARNL3-222	ENST00000498801	CD44	P16070	742 aa	Known RBP	13.2	□□□□□ -0.3
GARNL3-222	ENST00000498801	ZRANB1	Q9UGI0	708 aa		13.19	□□□□□ -0.3
GARNL3-222	ENST00000498801	PDS5B	Q9NTI5	1447 aa		13.19	□□□□□ -0.3
GARNL3-222	ENST00000498801	SUPT5H	O00267	1087 aa	Known RBP	13.14	□□□□□ -0.31
GARNL3-222	ENST00000498801	ERCC6	Q03468	1493 aa		13.14	□□□□□ -0.31
GARNL3-222	ENST00000498801	PHF12	Q96QT6	1004 aa		13.13	□□□□□ -0.31
GARNL3-222	ENST00000498801	THOC2	Q8NI27	1593 aa	Known RBP	13.11	□□□□□ -0.31
GARNL3-222	ENST00000498801	CUX2	O14529	1486 aa		13.1	□□□□□ -0.31
GARNL3-222	ENST00000498801	FANCD2	Q9BXW9	1451 aa		13.1	□□□□□ -0.31
GARNL3-222	ENST00000498801	MFRP	Q9BY79	579 aa		13.09	□□□□□ -0.31
GARNL3-222	ENST00000498801	CEP164	Q9UPV0	1460 aa		13.08	□□□□□ -0.32
GARNL3-222	ENST00000498801	MRC2	Q9UBG0	1479 aa		13.06	□□□□□ -0.32
GARNL3-222	ENST00000498801	PRDM2	Q13029	1718 aa		13.06	□□□□□ -0.32
GARNL3-222	ENST00000498801	C19orf67	A6NJJ6	358 aa		13.06	□□□□□ -0.32
GARNL3-222	ENST00000498801	CABP2	Q9NPB3	220 aa		13.06	□□□□□ -0.32
GARNL3-222	ENST00000498801	WDR62	O43379	1518 aa		13.06	□□□□□ -0.32
GARNL3-222	ENST00000498801	KIF21A	Q7Z4S6	1674 aa		13.05	□□□□□ -0.32
GARNL3-222	ENST00000498801	EFCAB3	Q8N7B9	438 aa		13.05	□□□□□ -0.32
GARNL3-222	ENST00000498801	SOX12	O15370	315 aa		13	□□□□□ -0.33
GARNL3-222	ENST00000498801	FBXO22	Q8NEZ5	403 aa		13	□□□□□ -0.33
GARNL3-222	ENST00000498801	MS4A3	Q96HJ5	214 aa		13	□□□□□ -0.33
GARNL3-222	ENST00000498801	NLRP6	P59044	892 aa		12.98	□□□□□ -0.33
GARNL3-222	ENST00000498801	CADPS2	Q86UW7	1296 aa		12.98	□□□□□ -0.33
GARNL3-222	ENST00000498801	PHF8	Q9UPP1	1060 aa		12.98	□□□□□ -0.33
GARNL3-222	ENST00000498801	NBR1	Q14596	966 aa		12.97	□□□□□ -0.33
GARNL3-222	ENST00000498801	URB2	Q14146	1524 aa	Known RBP	12.97	□□□□□ -0.33

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