RNA–Protein interactions for RNA: ENST00000498236.1

CDC42-205, Transcript of cell division cycle 42, humanhuman

TSL 5

Gene CDC42, Length 816 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42-205ENST00000498236 RTN4Q9NQC3 1192 aaKnown RBP13.03□□□□□ -0.32
CDC42-205ENST00000498236 CLEC11AQ9Y240 323 aa13.02□□□□□ -0.33
CDC42-205ENST00000498236 CC2D2AQ9P2K1 1620 aa13.02□□□□□ -0.33
CDC42-205ENST00000498236 PRKAR2AP13861 404 aaKnown RBP12.98□□□□□ -0.33
CDC42-205ENST00000498236 SSUH2Q9Y2M2 353 aa12.97□□□□□ -0.33
CDC42-205ENST00000498236 EVX2Q03828 476 aa12.96□□□□□ -0.33
CDC42-205ENST00000498236 FBXO3Q9UK99 471 aa12.92□□□□□ -0.34
CDC42-205ENST00000498236 PROM2Q8N271 834 aa12.9□□□□□ -0.34
CDC42-205ENST00000498236 C19orf67A6NJJ6 358 aa12.84□□□□□ -0.35
CDC42-205ENST00000498236 CFTRP13569 1480 aa12.82□□□□□ -0.36
CDC42-205ENST00000498236 PRR29P0C7W0 189 aa12.81□□□□□ -0.36
CDC42-205ENST00000498236 TRIM41Q8WV44 630 aa12.77□□□□□ -0.37
CDC42-205ENST00000498236 CADPSQ9ULU8 1353 aa12.76□□□□□ -0.37
CDC42-205ENST00000498236 CHADLQ6NUI6 762 aa12.75□□□□□ -0.37
CDC42-205ENST00000498236 PRDM2Q13029 1718 aa12.72□□□□□ -0.37
CDC42-205ENST00000498236 GABBR2O75899 941 aa12.72□□□□□ -0.37
CDC42-205ENST00000498236 ABCC8Q09428 1581 aa12.72□□□□□ -0.37
CDC42-205ENST00000498236 VASPP50552 380 aaPredicted RBP12.71□□□□□ -0.37
CDC42-205ENST00000498236 WRNQ14191 1432 aaPredicted RBP eCLIP12.71□□□□□ -0.38
CDC42-205ENST00000498236 LAMC3Q9Y6N6 1575 aa12.67□□□□□ -0.38
CDC42-205ENST00000498236 SYNJ1O43426 1573 aa12.64□□□□□ -0.39
CDC42-205ENST00000498236 TOP2BQ02880 1626 aa12.62□□□□□ -0.39
CDC42-205ENST00000498236 BIVM-ERCC5R4GMW8 1640 aa12.61□□□□□ -0.39
CDC42-205ENST00000498236 FANCD2Q9BXW9 1451 aa12.59□□□□□ -0.39
CDC42-205ENST00000498236 FARP1Q9Y4F1 1045 aaPredicted RBP12.59□□□□□ -0.39
CDC42-205ENST00000498236 NESP48681 1621 aa12.59□□□□□ -0.39
CDC42-205ENST00000498236 CUX1P39880 1505 aa12.57□□□□□ -0.4
CDC42-205ENST00000498236 PDS5BQ9NTI5 1447 aa12.57□□□□□ -0.4
CDC42-205ENST00000498236 EEA1Q15075 1411 aa12.56□□□□□ -0.4
CDC42-205ENST00000498236 CD44P16070 742 aaKnown RBP12.56□□□□□ -0.4
CDC42-205ENST00000498236 CLCN6P51797 869 aa12.55□□□□□ -0.4
CDC42-205ENST00000498236 IFNLR1Q8IU57 520 aaPredicted RBP12.55□□□□□ -0.4
CDC42-205ENST00000498236 LHX8Q68G74 356 aa12.54□□□□□ -0.4
CDC42-205ENST00000498236 CEP164Q9UPV0 1460 aa12.53□□□□□ -0.4
CDC42-205ENST00000498236 STAG3Q9UJ98 1225 aa12.52□□□□□ -0.41
CDC42-205ENST00000498236 SLC24A1O60721 1099 aa12.5□□□□□ -0.41
CDC42-205ENST00000498236 DNMBPQ6XZF7 1577 aa12.49□□□□□ -0.41
CDC42-205ENST00000498236 SOGA1O94964 1423 aa12.49□□□□□ -0.41
CDC42-205ENST00000498236 TOPBP1Q92547 1522 aa12.46□□□□□ -0.42
CDC42-205ENST00000498236 FAM9AQ8IZU1 332 aaPredicted RBP12.45□□□□□ -0.42
CDC42-205ENST00000498236 URB2Q14146 1524 aaKnown RBP12.44□□□□□ -0.42
CDC42-205ENST00000498236 FGD5Q6ZNL6 1462 aa12.44□□□□□ -0.42
CDC42-205ENST00000498236 KIF21AQ7Z4S6 1674 aa12.44□□□□□ -0.42
CDC42-205ENST00000498236 RUSC2Q8N2Y8 1516 aa12.43□□□□□ -0.42
CDC42-205ENST00000498236 LOC105371045A0A1W2PR82 267 aa12.43□□□□□ -0.42
CDC42-205ENST00000498236 KIF27Q86VH2 1401 aa12.4□□□□□ -0.42
CDC42-205ENST00000498236 KLHL34Q8N239 644 aa12.4□□□□□ -0.42
CDC42-205ENST00000498236 POLA1P09884 1462 aaPredicted RBP12.4□□□□□ -0.43
CDC42-205ENST00000498236 MRC2Q9UBG0 1479 aa12.4□□□□□ -0.43
CDC42-205ENST00000498236 PLCD3Q8N3E9 789 aa12.39□□□□□ -0.43
CDC42-205ENST00000498236 POTEIP0CG38 1075 aa12.38□□□□□ -0.43
CDC42-205ENST00000498236 DCBLD2Q96PD2 775 aa12.38□□□□□ -0.43
CDC42-205ENST00000498236 KIF21BO75037 1637 aa12.37□□□□□ -0.43
CDC42-205ENST00000498236 ABCA10Q8WWZ4 1543 aa12.37□□□□□ -0.43
CDC42-205ENST00000498236 CREBZFQ9NS37 354 aa12.36□□□□□ -0.43
CDC42-205ENST00000498236 ZNF579Q8NAF0 562 aaKnown RBP12.35□□□□□ -0.43
CDC42-205ENST00000498236 SPOCK2Q92563 424 aa12.35□□□□□ -0.43
CDC42-205ENST00000498236 ZRANB1Q9UGI0 708 aa12.35□□□□□ -0.43
CDC42-205ENST00000498236 WDR62O43379 1518 aa12.35□□□□□ -0.43
CDC42-205ENST00000498236 MIER1Q8N108 512 aa12.34□□□□□ -0.43
CDC42-205ENST00000498236 CUX2O14529 1486 aa12.34□□□□□ -0.43
CDC42-205ENST00000498236 GOLGA3Q08378 1498 aa12.34□□□□□ -0.43
CDC42-205ENST00000498236 PRXQ9BXM0 1461 aa12.33□□□□□ -0.44
CDC42-205ENST00000498236 ERCC6Q03468 1493 aa12.32□□□□□ -0.44
CDC42-205ENST00000498236 WDR97A6NE52 1622 aa12.31□□□□□ -0.44
CDC42-205ENST00000498236 RAD54L2Q9Y4B4 1467 aa12.31□□□□□ -0.44
CDC42-205ENST00000498236 ERICH3Q5RHP9 1530 aa12.31□□□□□ -0.44
CDC42-205ENST00000498236 TNIKQ9UKE5 1360 aa12.3□□□□□ -0.44
CDC42-205ENST00000498236 PKD2Q13563 968 aa12.3□□□□□ -0.44
CDC42-205ENST00000498236 IGF1RP08069 1367 aa12.3□□□□□ -0.44
CDC42-205ENST00000498236 THOC2Q8NI27 1593 aaKnown RBP12.29□□□□□ -0.44
CDC42-205ENST00000498236 TARBP1Q13395 1621 aaKnown RBP12.29□□□□□ -0.44
CDC42-205ENST00000498236 PLEKHG5O94827 1062 aa12.27□□□□□ -0.45
CDC42-205ENST00000498236 PAK3O75914 559 aaPredicted RBP12.26□□□□□ -0.45
CDC42-205ENST00000498236 IFT140Q96RY7 1462 aa12.26□□□□□ -0.45
CDC42-205ENST00000498236 RAPGEF2Q9Y4G8 1499 aa12.26□□□□□ -0.45
CDC42-205ENST00000498236 ABCA5Q8WWZ7 1642 aa12.26□□□□□ -0.45
CDC42-205ENST00000498236 NPM1P06748 294 aaKnown RBP eCLIP12.23□□□□□ -0.45
CDC42-205ENST00000498236 ZBTB47Q9UFB7 747 aaPredicted RBP12.23□□□□□ -0.45
CDC42-205ENST00000498236 GAPVD1Q14C86 1478 aa12.22□□□□□ -0.45
CDC42-205ENST00000498236 CARMIL1Q5VZK9 1371 aa12.21□□□□□ -0.45
CDC42-205ENST00000498236 UBTFP17480 764 aaKnown RBP12.21□□□□□ -0.45
CDC42-205ENST00000498236 CUL7Q14999 1698 aa12.21□□□□□ -0.45
CDC42-205ENST00000498236 CEP162Q5TB80 1403 aa12.2□□□□□ -0.46
CDC42-205ENST00000498236 TDRD9Q8NDG6 1382 aaKnown RBP12.19□□□□□ -0.46
CDC42-205ENST00000498236 GALR2O43603 387 aaPredicted RBP12.17□□□□□ -0.46
CDC42-205ENST00000498236 ECM2O94769 699 aaPredicted RBP12.17□□□□□ -0.46
CDC42-205ENST00000498236 GRIN2BQ13224 1484 aa12.14□□□□□ -0.47
CDC42-205ENST00000498236 AQRO60306 1485 aaKnown RBP eCLIP12.13□□□□□ -0.471e-6■■■■□ 23.9
CDC42-205ENST00000498236 PBRM1Q86U86 1689 aa12.13□□□□□ -0.47
CDC42-205ENST00000498236 ZNF608Q9ULD9 1512 aaPredicted RBP12.12□□□□□ -0.47
CDC42-205ENST00000498236 CLIP1P30622 1438 aa12.11□□□□□ -0.47
CDC42-205ENST00000498236 PHF12Q96QT6 1004 aa12.11□□□□□ -0.47
CDC42-205ENST00000498236 FHAD1B1AJZ9 1412 aa12.11□□□□□ -0.47
CDC42-205ENST00000498236 EIF4G3O43432 1585 aaKnown RBP12.1□□□□□ -0.47
CDC42-205ENST00000498236 MNX1P50219 401 aaPredicted RBP12.1□□□□□ -0.47
CDC42-205ENST00000498236 ADAMTS12P58397 1594 aa12.09□□□□□ -0.47
CDC42-205ENST00000498236 CIZ1Q9ULV3 898 aaPredicted RBP12.08□□□□□ -0.48
CDC42-205ENST00000498236 PLCB2Q00722 1185 aa12.07□□□□□ -0.48
CDC42-205ENST00000498236 MAGI1Q96QZ7 1491 aaPredicted RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 6.1 ms