RNA–Protein interactions for RNA: ENST00000498236.1

CDC42-205, Transcript of cell division cycle 42, humanhuman

TSL 5

Gene CDC42, Length 816 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42-205ENST00000498236 AEBP2Q6ZN18 517 aaPredicted RBP24.47■■□□□ 1.51
CDC42-205ENST00000498236 CHIC1Q5VXU3 224 aa23.08■■□□□ 1.29
CDC42-205ENST00000498236 SENP3Q9H4L4 574 aaPredicted RBP21.02■□□□□ 0.96
CDC42-205ENST00000498236 PHF23Q9BUL5 403 aaPredicted RBP20.7■□□□□ 0.9
CDC42-205ENST00000498236 FOXD1Q16676 465 aa19.56■□□□□ 0.72
CDC42-205ENST00000498236 MSH5O43196 834 aa18.47■□□□□ 0.55
CDC42-205ENST00000498236 PLPPR3Q6T4P5 718 aa18.38■□□□□ 0.53
CDC42-205ENST00000498236 POTEDQ86YR6 584 aa18.35■□□□□ 0.53
CDC42-205ENST00000498236 PIAS4Q8N2W9 510 aaPredicted RBP18.24■□□□□ 0.51
CDC42-205ENST00000498236 PPP6R1Q9UPN7 881 aa18.08■□□□□ 0.48
CDC42-205ENST00000498236 ADRA2BP18089 450 aa18.03■□□□□ 0.48
CDC42-205ENST00000498236 NISCHQ9Y2I1 1504 aa17.45■□□□□ 0.38
CDC42-205ENST00000498236 SCAF1Q9H7N4 1312 aaKnown RBP16.65■□□□□ 0.26
CDC42-205ENST00000498236 MAPK8IP2Q13387 824 aaPredicted RBP16.63■□□□□ 0.25
CDC42-205ENST00000498236 DMRT2Q9Y5R5 561 aa16.6■□□□□ 0.25
CDC42-205ENST00000498236 PPP4R3CPQ6ZMV5 832 aa16.05■□□□□ 0.16
CDC42-205ENST00000498236 CACNB1Q02641 598 aaPredicted RBP15.99■□□□□ 0.15
CDC42-205ENST00000498236 DCAF8L1A6NGE4 600 aa15.96■□□□□ 0.15
CDC42-205ENST00000498236 KCNA4P22459 653 aa15.92■□□□□ 0.14
CDC42-205ENST00000498236 HOXD11P31277 338 aaPredicted RBP15.91■□□□□ 0.14
CDC42-205ENST00000498236 CNKSR2Q8WXI2 1034 aa15.84■□□□□ 0.13
CDC42-205ENST00000498236 RNF216Q9NWF9 866 aaPredicted RBP15.75■□□□□ 0.11
CDC42-205ENST00000498236 RNF39Q9H2S5 420 aa15.69■□□□□ 0.1
CDC42-205ENST00000498236 NCBP3Q53F19 620 aaKnown RBP15.55■□□□□ 0.08
CDC42-205ENST00000498236 C1QBPQ07021 282 aaKnown RBP15.51■□□□□ 0.07
CDC42-205ENST00000498236 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
CDC42-205ENST00000498236 EHMT2Q96KQ7 1210 aa15.31■□□□□ 0.04
CDC42-205ENST00000498236 NPM3O75607 178 aaKnown RBP15.28■□□□□ 0.04
CDC42-205ENST00000498236 SLC4A1APQ9BWU0 796 aaKnown RBP15.27■□□□□ 0.04
CDC42-205ENST00000498236 CCDC180Q9P1Z9 1646 aa15.26■□□□□ 0.03
CDC42-205ENST00000498236 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.2■□□□□ 0.029e-6■■■□□ 18.9
CDC42-205ENST00000498236 CSRNP3Q8WYN3 585 aa14.93□□□□□ -0.02
CDC42-205ENST00000498236 U3KPZ7 1027 aaPredicted RBP14.77□□□□□ -0.05
CDC42-205ENST00000498236 CAPN15O75808 1086 aa14.67□□□□□ -0.06
CDC42-205ENST00000498236 ZCCHC6Q5VYS8 1495 aaKnown RBP14.66□□□□□ -0.06
CDC42-205ENST00000498236 ZBTB22O15209 634 aa14.65□□□□□ -0.06
CDC42-205ENST00000498236 SPINK5Q9NQ38 1064 aaPredicted RBP14.62□□□□□ -0.07
CDC42-205ENST00000498236 DSG3P32926 999 aa14.61□□□□□ -0.07
CDC42-205ENST00000498236 FOXD4L1Q9NU39 408 aa14.55□□□□□ -0.08
CDC42-205ENST00000498236 DCAF1Q9Y4B6 1507 aa14.51□□□□□ -0.09
CDC42-205ENST00000498236 APLP2Q06481 763 aa14.49□□□□□ -0.09
CDC42-205ENST00000498236 SLC4A2P04920 1241 aa14.48□□□□□ -0.09
CDC42-205ENST00000498236 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.41□□□□□ -0.1
CDC42-205ENST00000498236 HNRNPUL2Q1KMD3 747 aaKnown RBP14.41□□□□□ -0.1
CDC42-205ENST00000498236 TRHP20396 242 aaPredicted RBP14.37□□□□□ -0.11
CDC42-205ENST00000498236 ZNF219Q9P2Y4 722 aaPredicted RBP14.37□□□□□ -0.11
CDC42-205ENST00000498236 MYO15BQ96JP2 1530 aa14.36□□□□□ -0.11
CDC42-205ENST00000498236 POTEHQ6S545 545 aa14.36□□□□□ -0.11
CDC42-205ENST00000498236 ABCC9O60706 1549 aa14.34□□□□□ -0.11
CDC42-205ENST00000498236 SAMD1Q6SPF0 538 aaPredicted RBP14.28□□□□□ -0.12
CDC42-205ENST00000498236 ABCB7O75027 752 aa14.26□□□□□ -0.13
CDC42-205ENST00000498236 DCAF8L2P0C7V8 631 aa14.26□□□□□ -0.13
CDC42-205ENST00000498236 NACADO15069 1562 aa14.22□□□□□ -0.13
CDC42-205ENST00000498236 MYCNP04198 464 aaPredicted RBP14.13□□□□□ -0.15
CDC42-205ENST00000498236 RB1CC1Q8TDY2 1594 aa14.08□□□□□ -0.16
CDC42-205ENST00000498236 SHROOM4Q9ULL8 1493 aa14.05□□□□□ -0.16
CDC42-205ENST00000498236 ATXN8OSP0DMR3 200 aa14.02□□□□□ -0.17
CDC42-205ENST00000498236 RBM42Q9BTD8 480 aaKnown RBP14.02□□□□□ -0.17
CDC42-205ENST00000498236 POLA2Q14181 598 aa13.94□□□□□ -0.18
CDC42-205ENST00000498236 SCRIBQ14160 1630 aa13.92□□□□□ -0.18
CDC42-205ENST00000498236 CHRDL2Q6WN34 429 aa13.76□□□□□ -0.21
CDC42-205ENST00000498236 UNC13AQ9UPW8 1703 aa13.73□□□□□ -0.21
CDC42-205ENST00000498236 ZBTB12Q9Y330 459 aaPredicted RBP13.7□□□□□ -0.22
CDC42-205ENST00000498236 ATF5Q9Y2D1 282 aaPredicted RBP13.69□□□□□ -0.22
CDC42-205ENST00000498236 BICRAQ9NZM4 1560 aa13.65□□□□□ -0.22
CDC42-205ENST00000498236 AKT1S1Q96B36 256 aa13.63□□□□□ -0.23
CDC42-205ENST00000498236 RSF1Q96T23 1441 aaPredicted RBP13.51□□□□□ -0.25
CDC42-205ENST00000498236 SUPT5HO00267 1087 aaKnown RBP13.51□□□□□ -0.25
CDC42-205ENST00000498236 CECR2Q9BXF3 1484 aa13.5□□□□□ -0.25
CDC42-205ENST00000498236 FKBP8Q14318 412 aa13.49□□□□□ -0.25
CDC42-205ENST00000498236 PABPN1Q86U42 306 aaKnown RBP eCLIP13.49□□□□□ -0.25
CDC42-205ENST00000498236 REM2Q8IYK8 340 aaPredicted RBP13.48□□□□□ -0.25
CDC42-205ENST00000498236 BAZ1AQ9NRL2 1556 aaPredicted RBP13.48□□□□□ -0.25
CDC42-205ENST00000498236 OSCARQ8IYS5 282 aa13.44□□□□□ -0.26
CDC42-205ENST00000498236 MROH2BQ7Z745 1585 aa13.44□□□□□ -0.26
CDC42-205ENST00000498236 SMARCA4P51532 1647 aa13.4□□□□□ -0.26
CDC42-205ENST00000498236 PIP4P2Q8N4L2 257 aa13.36□□□□□ -0.27
CDC42-205ENST00000498236 SP7Q8TDD2 431 aaPredicted RBP13.36□□□□□ -0.27
CDC42-205ENST00000498236 PEG3Q9GZU2 1588 aa13.31□□□□□ -0.28
CDC42-205ENST00000498236 WIZO95785 1651 aa13.3□□□□□ -0.28
CDC42-205ENST00000498236 PITPNM1O00562 1244 aa13.29□□□□□ -0.28
CDC42-205ENST00000498236 FXR2P51116 673 aaKnown RBP eCLIP13.26□□□□□ -0.292e-6■□□□□ 9.9
CDC42-205ENST00000498236 FBLN2P98095 1184 aa13.25□□□□□ -0.29
CDC42-205ENST00000498236 HAX1O00165 279 aa13.24□□□□□ -0.29
CDC42-205ENST00000498236 SPDYE2BA6NHP3 402 aa13.23□□□□□ -0.29
CDC42-205ENST00000498236 SPDYE6P0CI01 402 aa13.23□□□□□ -0.29
CDC42-205ENST00000498236 SPDYE2Q495Y8 402 aa13.23□□□□□ -0.29
CDC42-205ENST00000498236 EIF4G1Q04637 1599 aaKnown RBP13.23□□□□□ -0.29
CDC42-205ENST00000498236 TOP2AP11388 1531 aaKnown RBP13.23□□□□□ -0.29
CDC42-205ENST00000498236 SMARCA2P51531 1590 aa13.21□□□□□ -0.29
CDC42-205ENST00000498236 ATAD2BQ9ULI0 1458 aa13.2□□□□□ -0.3
CDC42-205ENST00000498236 NCAPD3P42695 1498 aa13.13□□□□□ -0.31
CDC42-205ENST00000498236 MKRN4PQ13434 485 aaPredicted RBP13.12□□□□□ -0.31
CDC42-205ENST00000498236 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
CDC42-205ENST00000498236 BAZ1BQ9UIG0 1483 aaKnown RBP13.1□□□□□ -0.31
CDC42-205ENST00000498236 AMER1Q5JTC6 1135 aaPredicted RBP13.08□□□□□ -0.32
CDC42-205ENST00000498236 CCDC88BA6NC98 1476 aa13.06□□□□□ -0.32
CDC42-205ENST00000498236 SPDYE4A6NLX3 237 aa13.06□□□□□ -0.32
CDC42-205ENST00000498236 SPDYE1Q8NFV5 336 aaPredicted RBP13.06□□□□□ -0.32
CDC42-205ENST00000498236 ZNF692Q9BU19 519 aaPredicted RBP13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms