RNA–Protein interactions for RNA: ENST00000496723.1

CD46-218, Transcript of CD46 molecule, humanhuman

TSL 5

Gene CD46, Length 661 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-218ENST00000496723 MS4A3Q96HJ5 214 aa12.7□□□□□ -0.38
CD46-218ENST00000496723 ASTLQ6HA08 431 aaPredicted RBP12.67□□□□□ -0.38
CD46-218ENST00000496723 RASEFQ8IZ41 740 aa12.67□□□□□ -0.38
CD46-218ENST00000496723 KIF12Q96FN5 646 aa12.67□□□□□ -0.38
CD46-218ENST00000496723 FBXO3Q9UK99 471 aa12.64□□□□□ -0.39
CD46-218ENST00000496723 ATMINO43313 823 aaPredicted RBP12.62□□□□□ -0.39
CD46-218ENST00000496723 PELP1Q8IZL8 1130 aaKnown RBP12.61□□□□□ -0.39
CD46-218ENST00000496723 C7P10643 843 aa12.59□□□□□ -0.39
CD46-218ENST00000496723 NUBP1P53384 320 aa12.58□□□□□ -0.4
CD46-218ENST00000496723 SLC39A7Q92504 469 aa12.58□□□□□ -0.4
CD46-218ENST00000496723 MAP3K13O43283 966 aa12.57□□□□□ -0.4
CD46-218ENST00000496723 SGIP1Q9BQI5 828 aa12.55□□□□□ -0.4
CD46-218ENST00000496723 METRNQ9UJH8 293 aa12.55□□□□□ -0.4
CD46-218ENST00000496723 FAM212AQ96EL1 285 aa12.54□□□□□ -0.4
CD46-218ENST00000496723 POTEB2H3BUK9 544 aa12.52□□□□□ -0.41
CD46-218ENST00000496723 TIE1P35590 1138 aa12.52□□□□□ -0.41
CD46-218ENST00000496723 ATN1P54259 1190 aaPredicted RBP12.51□□□□□ -0.41
CD46-218ENST00000496723 OTUD5Q96G74 571 aa12.5□□□□□ -0.41
CD46-218ENST00000496723 BMP2KQ9NSY1 1161 aaPredicted RBP12.5□□□□□ -0.41
CD46-218ENST00000496723 PCDHB13Q9Y5F0 798 aa12.47□□□□□ -0.41
CD46-218ENST00000496723 TRPC6Q9Y210 931 aa12.46□□□□□ -0.41
CD46-218ENST00000496723 MAMSTRQ6ZN01 415 aa12.43□□□□□ -0.42
CD46-218ENST00000496723 TTLL13PA6NNM8 815 aa12.42□□□□□ -0.42
CD46-218ENST00000496723 VASPP50552 380 aaPredicted RBP12.41□□□□□ -0.42
CD46-218ENST00000496723 DCAF8Q5TAQ9 597 aa12.39□□□□□ -0.43
CD46-218ENST00000496723 IFNL1Q8IU54 200 aa12.39□□□□□ -0.43
CD46-218ENST00000496723 POTEJP0CG39 1038 aa12.36□□□□□ -0.43
CD46-218ENST00000496723 IER5LQ5T953 404 aa12.36□□□□□ -0.43
CD46-218ENST00000496723 KLHL34Q8N239 644 aa12.36□□□□□ -0.43
CD46-218ENST00000496723 TRIM35Q9UPQ4 493 aa12.33□□□□□ -0.44
CD46-218ENST00000496723 POTEFA5A3E0 1075 aa12.32□□□□□ -0.44
CD46-218ENST00000496723 SEC24BO95487 1268 aa12.32□□□□□ -0.44
CD46-218ENST00000496723 SCUBE2Q9NQ36 999 aa12.32□□□□□ -0.44
CD46-218ENST00000496723 GSE1Q14687 1217 aa12.31□□□□□ -0.44
CD46-218ENST00000496723 PYGBP11216 843 aa12.3□□□□□ -0.44
CD46-218ENST00000496723 TMEM106CQ9BVX2 250 aa12.3□□□□□ -0.44
CD46-218ENST00000496723 COLQQ9Y215 455 aaPredicted RBP12.27□□□□□ -0.45
CD46-218ENST00000496723 CHRM1P11229 460 aaPredicted RBP12.23□□□□□ -0.45
CD46-218ENST00000496723 ZNF467Q7Z7K2 595 aaPredicted RBP12.21□□□□□ -0.45
CD46-218ENST00000496723 PCDHB8Q9UN66 801 aa12.2□□□□□ -0.46
CD46-218ENST00000496723 PLCG2P16885 1265 aa12.18□□□□□ -0.46
CD46-218ENST00000496723 IFNLR1Q8IU57 520 aaPredicted RBP12.18□□□□□ -0.46
CD46-218ENST00000496723 SPOCK2Q92563 424 aa12.18□□□□□ -0.46
CD46-218ENST00000496723 IRX5P78411 483 aaPredicted RBP12.16□□□□□ -0.46
CD46-218ENST00000496723 POTEMA6NI47 508 aa12.14□□□□□ -0.47
CD46-218ENST00000496723 OCEL1Q9H607 264 aa12.14□□□□□ -0.47
CD46-218ENST00000496723 POTEGQ6S5H5 508 aa12.12□□□□□ -0.47
CD46-218ENST00000496723 FAM163AQ96GL9 167 aaPredicted RBP12.08□□□□□ -0.48
CD46-218ENST00000496723 PCDH10Q9P2E7 1040 aa12.07□□□□□ -0.48
CD46-218ENST00000496723 CIZ1Q9ULV3 898 aaPredicted RBP12.07□□□□□ -0.48
CD46-218ENST00000496723 GOLGA2Q08379 1002 aa12.06□□□□□ -0.48
CD46-218ENST00000496723 PSEN1P49768 467 aa12.05□□□□□ -0.48
CD46-218ENST00000496723 MKRN3Q13064 507 aaKnown RBP12.04□□□□□ -0.48
CD46-218ENST00000496723 LCE2DQ5TA82 110 aaPredicted RBP12.04□□□□□ -0.48
CD46-218ENST00000496723 PDAP1Q13442 181 aaKnown RBP12.03□□□□□ -0.48
CD46-218ENST00000496723 SLAIN1Q8ND83 568 aa12.03□□□□□ -0.48
CD46-218ENST00000496723 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
CD46-218ENST00000496723 PLSCR2Q9NRY7 297 aa12□□□□□ -0.49
CD46-218ENST00000496723 PDCD7Q8N8D1 485 aaKnown RBP11.98□□□□□ -0.49
CD46-218ENST00000496723 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.97□□□□□ -0.49
CD46-218ENST00000496723 L3MBTL3Q96JM7 780 aaPredicted RBP11.96□□□□□ -0.49
CD46-218ENST00000496723 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.95□□□□□ -0.52e-7■□□□□ 9.4
CD46-218ENST00000496723 ILDR1Q86SU0 546 aaPredicted RBP11.93□□□□□ -0.5
CD46-218ENST00000496723 SNPHO15079 494 aa11.91□□□□□ -0.5
CD46-218ENST00000496723 C3orf67Q6ZVT6 689 aa11.89□□□□□ -0.51
CD46-218ENST00000496723 CABP2Q9NPB3 220 aa11.89□□□□□ -0.51
CD46-218ENST00000496723 ST18O60284 1047 aa11.87□□□□□ -0.51
CD46-218ENST00000496723 TMEM121BQ9BXQ6 578 aaPredicted RBP11.85□□□□□ -0.51
CD46-218ENST00000496723 G3V3G9 751 aa11.79□□□□□ -0.52
CD46-218ENST00000496723 RIOK3O14730 519 aaKnown RBP11.79□□□□□ -0.52
CD46-218ENST00000496723 DPY19L2Q6NUT2 758 aa11.78□□□□□ -0.52
CD46-218ENST00000496723 CDAN1Q8IWY9 1227 aa11.77□□□□□ -0.53
CD46-218ENST00000496723 BOLA1Q9Y3E2 137 aa11.77□□□□□ -0.53
CD46-218ENST00000496723 EFCAB3Q8N7B9 438 aa11.75□□□□□ -0.53
CD46-218ENST00000496723 VGFO15240 615 aaPredicted RBP11.74□□□□□ -0.53
CD46-218ENST00000496723 RNF25Q96BH1 459 aaPredicted RBP11.73□□□□□ -0.53
CD46-218ENST00000496723 SOX12O15370 315 aa11.71□□□□□ -0.53
CD46-218ENST00000496723 TAOK2Q9UL54 1235 aa11.71□□□□□ -0.53
CD46-218ENST00000496723 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.69□□□□□ -0.54
CD46-218ENST00000496723 ZFP91Q96JP5 570 aaPredicted RBP11.69□□□□□ -0.54
CD46-218ENST00000496723 MARVELD3Q96A59 401 aa11.65□□□□□ -0.54
CD46-218ENST00000496723 EMP3P54852 163 aa11.62□□□□□ -0.55
CD46-218ENST00000496723 MICALL2Q8IY33 904 aa11.59□□□□□ -0.55
CD46-218ENST00000496723 HOXB3P14651 431 aaPredicted RBP11.58□□□□□ -0.56
CD46-218ENST00000496723 DOK7Q18PE1 504 aa11.58□□□□□ -0.56
CD46-218ENST00000496723 MS4A4AQ96JQ5 239 aa11.57□□□□□ -0.56
CD46-218ENST00000496723 BCL11BQ9C0K0 894 aaPredicted RBP11.57□□□□□ -0.56
CD46-218ENST00000496723 PHF8Q9UPP1 1060 aa11.57□□□□□ -0.56
CD46-218ENST00000496723 ECM2O94769 699 aaPredicted RBP11.56□□□□□ -0.56
CD46-218ENST00000496723 NLRP6P59044 892 aa11.56□□□□□ -0.56
CD46-218ENST00000496723 ZNF710Q8N1W2 664 aa11.55□□□□□ -0.56
CD46-218ENST00000496723 RIMBP2O15034 1052 aa11.53□□□□□ -0.56
CD46-218ENST00000496723 STK24Q9Y6E0 443 aa11.53□□□□□ -0.56
CD46-218ENST00000496723 HOXB1P14653 301 aaPredicted RBP11.52□□□□□ -0.57
CD46-218ENST00000496723 HS3ST6Q96QI5 342 aa11.52□□□□□ -0.57
CD46-218ENST00000496723 FAM205CA6NFA0 338 aa11.51□□□□□ -0.57
CD46-218ENST00000496723 STK25O00506 426 aa11.5□□□□□ -0.57
CD46-218ENST00000496723 PKD2Q13563 968 aa11.5□□□□□ -0.57
CD46-218ENST00000496723 FBXO22Q8NEZ5 403 aa11.5□□□□□ -0.57
CD46-218ENST00000496723 TMEM92Q6UXU6 159 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms