RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 FARP1Q9Y4F1 1045 aaPredicted RBP10.16□□□□□ -0.78
CD46-216ENST00000490278 DCAF8L2P0C7V8 631 aa10.15□□□□□ -0.78
CD46-216ENST00000490278 CLCN6P51797 869 aa10.15□□□□□ -0.78
CD46-216ENST00000490278 GSE1Q14687 1217 aa10.14□□□□□ -0.79
CD46-216ENST00000490278 NPM1P06748 294 aaKnown RBP eCLIP10.13□□□□□ -0.79
CD46-216ENST00000490278 TRIM41Q8WV44 630 aa10.12□□□□□ -0.79
CD46-216ENST00000490278 DCAF8Q5TAQ9 597 aa10.11□□□□□ -0.79
CD46-216ENST00000490278 FAM212AQ96EL1 285 aa10.1□□□□□ -0.79
CD46-216ENST00000490278 PLSCR2Q9NRY7 297 aa10.1□□□□□ -0.79
CD46-216ENST00000490278 RASEFQ8IZ41 740 aa10.08□□□□□ -0.8
CD46-216ENST00000490278 RGL2O15211 777 aa10.07□□□□□ -0.8
CD46-216ENST00000490278 DCBLD2Q96PD2 775 aa10.07□□□□□ -0.8
CD46-216ENST00000490278 SLC24A1O60721 1099 aa10.05□□□□□ -0.8
CD46-216ENST00000490278 ZNF579Q8NAF0 562 aaKnown RBP10.02□□□□□ -0.81
CD46-216ENST00000490278 ZRANB1Q9UGI0 708 aa9.98□□□□□ -0.81
CD46-216ENST00000490278 CHRM1P11229 460 aaPredicted RBP9.97□□□□□ -0.81
CD46-216ENST00000490278 TSPYL2Q9H2G4 693 aaPredicted RBP9.96□□□□□ -0.82
CD46-216ENST00000490278 RNF25Q96BH1 459 aaPredicted RBP9.95□□□□□ -0.82
CD46-216ENST00000490278 OTUD5Q96G74 571 aa9.95□□□□□ -0.82
CD46-216ENST00000490278 GALR2O43603 387 aaPredicted RBP9.94□□□□□ -0.82
CD46-216ENST00000490278 RIOK3O14730 519 aaKnown RBP9.93□□□□□ -0.82
CD46-216ENST00000490278 PYGBP11216 843 aa9.93□□□□□ -0.82
CD46-216ENST00000490278 POTEB2H3BUK9 544 aa9.92□□□□□ -0.82
CD46-216ENST00000490278 PLCB2Q00722 1185 aa9.92□□□□□ -0.82
CD46-216ENST00000490278 BBXQ8WY36 941 aaPredicted RBP9.92□□□□□ -0.82
CD46-216ENST00000490278 TAOK2Q9UL54 1235 aa9.92□□□□□ -0.82
CD46-216ENST00000490278 CHGAP10645 457 aaKnown RBP9.91□□□□□ -0.82
CD46-216ENST00000490278 PAK3O75914 559 aaPredicted RBP9.9□□□□□ -0.82
CD46-216ENST00000490278 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.89□□□□□ -0.83
CD46-216ENST00000490278 VGFO15240 615 aaPredicted RBP9.87□□□□□ -0.83
CD46-216ENST00000490278 HS6ST3Q8IZP7 471 aa9.87□□□□□ -0.83
CD46-216ENST00000490278 CCDC61Q9Y6R9 512 aa9.87□□□□□ -0.83
CD46-216ENST00000490278 POTEMA6NI47 508 aa9.84□□□□□ -0.83
CD46-216ENST00000490278 ZNF467Q7Z7K2 595 aaPredicted RBP9.82□□□□□ -0.84
CD46-216ENST00000490278 PHF12Q96QT6 1004 aa9.82□□□□□ -0.84
CD46-216ENST00000490278 SGIP1Q9BQI5 828 aa9.82□□□□□ -0.84
CD46-216ENST00000490278 POTEGQ6S5H5 508 aa9.81□□□□□ -0.84
CD46-216ENST00000490278 PELP1Q8IZL8 1130 aaKnown RBP9.81□□□□□ -0.84
CD46-216ENST00000490278 STK25O00506 426 aa9.8□□□□□ -0.84
CD46-216ENST00000490278 PAXIP1Q6ZW49 1069 aaPredicted RBP9.8□□□□□ -0.84
CD46-216ENST00000490278 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.79□□□□□ -0.84
CD46-216ENST00000490278 ZFP91Q96JP5 570 aaPredicted RBP9.79□□□□□ -0.84
CD46-216ENST00000490278 DNAJC5Q9H3Z4 198 aa9.79□□□□□ -0.84
CD46-216ENST00000490278 CFAP44Q96MT7 982 aa9.78□□□□□ -0.84
CD46-216ENST00000490278 HAP1P54257 671 aaPredicted RBP9.77□□□□□ -0.85
CD46-216ENST00000490278 SPRYD3Q8NCJ5 442 aa9.77□□□□□ -0.85
CD46-216ENST00000490278 PCDHB8Q9UN66 801 aa9.77□□□□□ -0.85
CD46-216ENST00000490278 PCDHB13Q9Y5F0 798 aa9.77□□□□□ -0.85
CD46-216ENST00000490278 KIF12Q96FN5 646 aa9.76□□□□□ -0.85
CD46-216ENST00000490278 BCL11BQ9C0K0 894 aaPredicted RBP9.76□□□□□ -0.85
CD46-216ENST00000490278 PDAP1Q13442 181 aaKnown RBP9.75□□□□□ -0.85
CD46-216ENST00000490278 STK24Q9Y6E0 443 aa9.75□□□□□ -0.85
CD46-216ENST00000490278 MAP3K13O43283 966 aa9.74□□□□□ -0.85
CD46-216ENST00000490278 IFNL1Q8IU54 200 aa9.73□□□□□ -0.85
CD46-216ENST00000490278 POTEJP0CG39 1038 aa9.71□□□□□ -0.86
CD46-216ENST00000490278 NKX1-1Q15270 411 aaPredicted RBP9.71□□□□□ -0.86
CD46-216ENST00000490278 ASTLQ6HA08 431 aaPredicted RBP9.71□□□□□ -0.86
CD46-216ENST00000490278 PCDH10Q9P2E7 1040 aa9.71□□□□□ -0.86
CD46-216ENST00000490278 PSEN1P49768 467 aa9.7□□□□□ -0.86
CD46-216ENST00000490278 METRNQ9UJH8 293 aa9.69□□□□□ -0.86
CD46-216ENST00000490278 ATMINO43313 823 aaPredicted RBP9.68□□□□□ -0.86
CD46-216ENST00000490278 MS4A3Q96HJ5 214 aa9.68□□□□□ -0.86
CD46-216ENST00000490278 C7P10643 843 aa9.67□□□□□ -0.86
CD46-216ENST00000490278 SLC39A7Q92504 469 aa9.67□□□□□ -0.86
CD46-216ENST00000490278 GTPBP6O43824 516 aaPredicted RBP9.64□□□□□ -0.87
CD46-216ENST00000490278 LCE2DQ5TA82 110 aaPredicted RBP9.64□□□□□ -0.87
CD46-216ENST00000490278 MAMSTRQ6ZN01 415 aa9.64□□□□□ -0.87
CD46-216ENST00000490278 VSIG10Q8N0Z9 540 aa9.64□□□□□ -0.87
CD46-216ENST00000490278 RYDENQ9NUL5 291 aaKnown RBP9.64□□□□□ -0.87
CD46-216ENST00000490278 TSHZ2Q9NRE2 1034 aa9.61□□□□□ -0.87
CD46-216ENST00000490278 FAM163AQ96GL9 167 aaPredicted RBP9.58□□□□□ -0.88
CD46-216ENST00000490278 CABP2Q9NPB3 220 aa9.58□□□□□ -0.88
CD46-216ENST00000490278 ATN1P54259 1190 aaPredicted RBP9.57□□□□□ -0.88
CD46-216ENST00000490278 EFCAB3Q8N7B9 438 aa9.56□□□□□ -0.88
CD46-216ENST00000490278 TMEM106CQ9BVX2 250 aa9.56□□□□□ -0.88
CD46-216ENST00000490278 TRPC6Q9Y210 931 aa9.56□□□□□ -0.88
CD46-216ENST00000490278 KDM2AQ9Y2K7 1162 aa9.55□□□□□ -0.88
CD46-216ENST00000490278 MFRPQ9BY79 579 aa9.54□□□□□ -0.88
CD46-216ENST00000490278 SCUBE2Q9NQ36 999 aa9.54□□□□□ -0.88
CD46-216ENST00000490278 POTEFA5A3E0 1075 aa9.53□□□□□ -0.88
CD46-216ENST00000490278 SOX12O15370 315 aa9.53□□□□□ -0.88
CD46-216ENST00000490278 TIE1P35590 1138 aa9.53□□□□□ -0.88
CD46-216ENST00000490278 GOLGA2Q08379 1002 aa9.52□□□□□ -0.89
CD46-216ENST00000490278 NLRP6P59044 892 aa9.51□□□□□ -0.89
CD46-216ENST00000490278 TTLL13PA6NNM8 815 aa9.49□□□□□ -0.89
CD46-216ENST00000490278 BMP2KQ9NSY1 1161 aaPredicted RBP9.49□□□□□ -0.89
CD46-216ENST00000490278 PHF8Q9UPP1 1060 aa9.49□□□□□ -0.89
CD46-216ENST00000490278 FBXO22Q8NEZ5 403 aa9.48□□□□□ -0.89
CD46-216ENST00000490278 MKRN3Q13064 507 aaKnown RBP9.47□□□□□ -0.89
CD46-216ENST00000490278 TRIM35Q9UPQ4 493 aa9.43□□□□□ -0.9
CD46-216ENST00000490278 PPP1R37O75864 691 aa9.42□□□□□ -0.9
CD46-216ENST00000490278 CDAN1Q8IWY9 1227 aa9.4□□□□□ -0.9
CD46-216ENST00000490278 MS4A4AQ96JQ5 239 aa9.4□□□□□ -0.9
CD46-216ENST00000490278 COLQQ9Y215 455 aaPredicted RBP9.4□□□□□ -0.9
CD46-216ENST00000490278 CADPS2Q86UW7 1296 aa9.38□□□□□ -0.91
CD46-216ENST00000490278 BCANQ96GW7 911 aa9.38□□□□□ -0.91
CD46-216ENST00000490278 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.38□□□□□ -0.91
CD46-216ENST00000490278 ILDR1Q86SU0 546 aaPredicted RBP9.37□□□□□ -0.91
CD46-216ENST00000490278 SEC24BO95487 1268 aa9.35□□□□□ -0.91
CD46-216ENST00000490278 IER5LQ5T953 404 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms