RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 EIF4G1Q04637 1599 aaKnown RBP14.34□□□□□ -0.11
SMC4-217ENST00000485867 CLCN6P51797 869 aa14.31□□□□□ -0.12
SMC4-217ENST00000485867 PAK3O75914 559 aaPredicted RBP14.25□□□□□ -0.13
SMC4-217ENST00000485867 MIER1Q8N108 512 aa14.24□□□□□ -0.13
SMC4-217ENST00000485867 SCRIBQ14160 1630 aa14.2□□□□□ -0.14
SMC4-217ENST00000485867 POTEIP0CG38 1075 aa14.2□□□□□ -0.14
SMC4-217ENST00000485867 PLEKHG5O94827 1062 aa14.19□□□□□ -0.14
SMC4-217ENST00000485867 PHF12Q96QT6 1004 aa14.19□□□□□ -0.14
SMC4-217ENST00000485867 DCAF1Q9Y4B6 1507 aa14.15□□□□□ -0.14
SMC4-217ENST00000485867 GALR2O43603 387 aaPredicted RBP14.15□□□□□ -0.14
SMC4-217ENST00000485867 PLCD3Q8N3E9 789 aa14.14□□□□□ -0.15
SMC4-217ENST00000485867 ZCCHC6Q5VYS8 1495 aaKnown RBP14.13□□□□□ -0.15
SMC4-217ENST00000485867 TSPYL2Q9H2G4 693 aaPredicted RBP14.1□□□□□ -0.15
SMC4-217ENST00000485867 DCBLD2Q96PD2 775 aa14.09□□□□□ -0.15
SMC4-217ENST00000485867 CCDC61Q9Y6R9 512 aa14.07□□□□□ -0.16
SMC4-217ENST00000485867 RASEFQ8IZ41 740 aa14.06□□□□□ -0.16
SMC4-217ENST00000485867 FBXO3Q9UK99 471 aa14.05□□□□□ -0.16
SMC4-217ENST00000485867 ZBTB47Q9UFB7 747 aaPredicted RBP14.04□□□□□ -0.16
SMC4-217ENST00000485867 CUX2O14529 1486 aa14.03□□□□□ -0.16
SMC4-217ENST00000485867 MS4A3Q96HJ5 214 aa14□□□□□ -0.17
SMC4-217ENST00000485867 NUBP1P53384 320 aa13.99□□□□□ -0.17
SMC4-217ENST00000485867 LHX8Q68G74 356 aa13.99□□□□□ -0.17
SMC4-217ENST00000485867 KIF12Q96FN5 646 aa13.96□□□□□ -0.17
SMC4-217ENST00000485867 VASPP50552 380 aaPredicted RBP13.91□□□□□ -0.18
SMC4-217ENST00000485867 MAP3K13O43283 966 aa13.88□□□□□ -0.19
SMC4-217ENST00000485867 ASTLQ6HA08 431 aaPredicted RBP13.88□□□□□ -0.19
SMC4-217ENST00000485867 PELP1Q8IZL8 1130 aaKnown RBP13.87□□□□□ -0.19
SMC4-217ENST00000485867 ERCC6Q03468 1493 aa13.87□□□□□ -0.19
SMC4-217ENST00000485867 ATMINO43313 823 aaPredicted RBP13.85□□□□□ -0.19
SMC4-217ENST00000485867 FAM212AQ96EL1 285 aa13.85□□□□□ -0.19
SMC4-217ENST00000485867 TRPC6Q9Y210 931 aa13.82□□□□□ -0.2
SMC4-217ENST00000485867 SGIP1Q9BQI5 828 aa13.78□□□□□ -0.2
SMC4-217ENST00000485867 BMP2KQ9NSY1 1161 aaPredicted RBP13.77□□□□□ -0.21
SMC4-217ENST00000485867 ATN1P54259 1190 aaPredicted RBP13.76□□□□□ -0.21
SMC4-217ENST00000485867 TIE1P35590 1138 aa13.75□□□□□ -0.21
SMC4-217ENST00000485867 KLHL34Q8N239 644 aa13.75□□□□□ -0.21
SMC4-217ENST00000485867 PCDHB13Q9Y5F0 798 aa13.75□□□□□ -0.21
SMC4-217ENST00000485867 POTEB2H3BUK9 544 aa13.73□□□□□ -0.21
SMC4-217ENST00000485867 DCAF8Q5TAQ9 597 aa13.73□□□□□ -0.21
SMC4-217ENST00000485867 SLC39A7Q92504 469 aa13.73□□□□□ -0.21
SMC4-217ENST00000485867 METRNQ9UJH8 293 aa13.73□□□□□ -0.21
SMC4-217ENST00000485867 C7P10643 843 aa13.71□□□□□ -0.21
SMC4-217ENST00000485867 NCAPD3P42695 1498 aa13.7□□□□□ -0.22
SMC4-217ENST00000485867 IFNL1Q8IU54 200 aa13.7□□□□□ -0.22
SMC4-217ENST00000485867 TTLL13PA6NNM8 815 aa13.68□□□□□ -0.22
SMC4-217ENST00000485867 IFNLR1Q8IU57 520 aaPredicted RBP13.68□□□□□ -0.22
SMC4-217ENST00000485867 THOC2Q8NI27 1593 aaKnown RBP13.66□□□□□ -0.22
SMC4-217ENST00000485867 NESP48681 1621 aa13.66□□□□□ -0.22
SMC4-217ENST00000485867 PYGBP11216 843 aa13.66□□□□□ -0.22
SMC4-217ENST00000485867 TRIM41Q8WV44 630 aa13.65□□□□□ -0.22
SMC4-217ENST00000485867 GSE1Q14687 1217 aa13.63□□□□□ -0.23
SMC4-217ENST00000485867 OTUD5Q96G74 571 aa13.63□□□□□ -0.23
SMC4-217ENST00000485867 ATAD2BQ9ULI0 1458 aa13.61□□□□□ -0.23
SMC4-217ENST00000485867 HMGXB3Q12766 1538 aa13.6□□□□□ -0.23
SMC4-217ENST00000485867 POTEFA5A3E0 1075 aa13.59□□□□□ -0.23
SMC4-217ENST00000485867 SPOCK2Q92563 424 aa13.59□□□□□ -0.23
SMC4-217ENST00000485867 POTEJP0CG39 1038 aa13.58□□□□□ -0.24
SMC4-217ENST00000485867 TRIM35Q9UPQ4 493 aa13.58□□□□□ -0.24
SMC4-217ENST00000485867 TMEM106CQ9BVX2 250 aa13.56□□□□□ -0.24
SMC4-217ENST00000485867 SMARCA2P51531 1590 aa13.55□□□□□ -0.24
SMC4-217ENST00000485867 PCDHB8Q9UN66 801 aa13.55□□□□□ -0.24
SMC4-217ENST00000485867 CHRM1P11229 460 aaPredicted RBP13.54□□□□□ -0.24
SMC4-217ENST00000485867 IER5LQ5T953 404 aa13.53□□□□□ -0.24
SMC4-217ENST00000485867 COLQQ9Y215 455 aaPredicted RBP13.52□□□□□ -0.25
SMC4-217ENST00000485867 KIF21AQ7Z4S6 1674 aa13.52□□□□□ -0.25
SMC4-217ENST00000485867 SMARCA4P51532 1647 aa13.51□□□□□ -0.25
SMC4-217ENST00000485867 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
SMC4-217ENST00000485867 ZNF467Q7Z7K2 595 aaPredicted RBP13.48□□□□□ -0.25
SMC4-217ENST00000485867 SEC24BO95487 1268 aa13.47□□□□□ -0.25
SMC4-217ENST00000485867 MAMSTRQ6ZN01 415 aa13.46□□□□□ -0.25
SMC4-217ENST00000485867 CIZ1Q9ULV3 898 aaPredicted RBP13.46□□□□□ -0.25
SMC4-217ENST00000485867 BAZ1BQ9UIG0 1483 aaKnown RBP13.44□□□□□ -0.26
SMC4-217ENST00000485867 IRX5P78411 483 aaPredicted RBP13.4□□□□□ -0.26
SMC4-217ENST00000485867 SCUBE2Q9NQ36 999 aa13.4□□□□□ -0.26
SMC4-217ENST00000485867 PDS5BQ9NTI5 1447 aa13.39□□□□□ -0.27
SMC4-217ENST00000485867 PEG3Q9GZU2 1588 aa13.38□□□□□ -0.27
SMC4-217ENST00000485867 BAZ1AQ9NRL2 1556 aaPredicted RBP13.38□□□□□ -0.27
SMC4-217ENST00000485867 PSEN1P49768 467 aa13.36□□□□□ -0.27
SMC4-217ENST00000485867 PLCG2P16885 1265 aa13.35□□□□□ -0.27
SMC4-217ENST00000485867 MRC2Q9UBG0 1479 aa13.34□□□□□ -0.27
SMC4-217ENST00000485867 WDR62O43379 1518 aa13.34□□□□□ -0.27
SMC4-217ENST00000485867 PDAP1Q13442 181 aaKnown RBP13.32□□□□□ -0.28
SMC4-217ENST00000485867 OCEL1Q9H607 264 aa13.32□□□□□ -0.28
SMC4-217ENST00000485867 CADPSQ9ULU8 1353 aa13.25□□□□□ -0.29
SMC4-217ENST00000485867 GOLGA2Q08379 1002 aa13.25□□□□□ -0.29
SMC4-217ENST00000485867 MKRN3Q13064 507 aaKnown RBP13.24□□□□□ -0.29
SMC4-217ENST00000485867 PDCD7Q8N8D1 485 aaKnown RBP13.24□□□□□ -0.29
SMC4-217ENST00000485867 RIMBP3CA6NJZ7 1639 aa13.21□□□□□ -0.29
SMC4-217ENST00000485867 RIMBP3BA6NNM3 1639 aa13.21□□□□□ -0.29
SMC4-217ENST00000485867 RIMBP3Q9UFD9 1639 aa13.21□□□□□ -0.29
SMC4-217ENST00000485867 MROH2BQ7Z745 1585 aa13.21□□□□□ -0.29
SMC4-217ENST00000485867 ILDR1Q86SU0 546 aaPredicted RBP13.19□□□□□ -0.3
SMC4-217ENST00000485867 CEP164Q9UPV0 1460 aa13.18□□□□□ -0.3
SMC4-217ENST00000485867 LCE2DQ5TA82 110 aaPredicted RBP13.18□□□□□ -0.3
SMC4-217ENST00000485867 RNF25Q96BH1 459 aaPredicted RBP13.18□□□□□ -0.3
SMC4-217ENST00000485867 CABP2Q9NPB3 220 aa13.18□□□□□ -0.3
SMC4-217ENST00000485867 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.18□□□□□ -0.31e-7■■■□□ 16.5
SMC4-217ENST00000485867 SLAIN1Q8ND83 568 aa13.16□□□□□ -0.3
SMC4-217ENST00000485867 POTEMA6NI47 508 aa13.14□□□□□ -0.31
SMC4-217ENST00000485867 RIOK3O14730 519 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms