RNA–Protein interactions for RNA: ENST00000485027.5

KPNA1-208, Transcript of karyopherin subunit alpha 1, humanhuman

TSL 2

Gene KPNA1, Length 1,843 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA1-208ENST00000485027 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.81□□□□□ -0.84
KPNA1-208ENST00000485027 PDIA4P13667 645 aaKnown RBP9.79□□□□□ -0.84
KPNA1-208ENST00000485027 ARID3CA6NKF2 412 aa9.75□□□□□ -0.85
KPNA1-208ENST00000485027 ABCC9O60706 1549 aa9.72□□□□□ -0.85
KPNA1-208ENST00000485027 CDK11BP21127 795 aaKnown RBP9.72□□□□□ -0.85
KPNA1-208ENST00000485027 CDK11AQ9UQ88 783 aaPredicted RBP9.72□□□□□ -0.85
KPNA1-208ENST00000485027 SLC24A3Q9HC58 644 aa9.71□□□□□ -0.85
KPNA1-208ENST00000485027 NKX1-1Q15270 411 aaPredicted RBP9.7□□□□□ -0.86
KPNA1-208ENST00000485027 HS6ST3Q8IZP7 471 aa9.69□□□□□ -0.86
KPNA1-208ENST00000485027 CHMP4AQ9BY43 222 aa9.69□□□□□ -0.86
KPNA1-208ENST00000485027 HOXD11P31277 338 aaPredicted RBP9.68□□□□□ -0.86
KPNA1-208ENST00000485027 MKRN4PQ13434 485 aaPredicted RBP9.66□□□□□ -0.86
KPNA1-208ENST00000485027 KCTD17Q8N5Z5 321 aa9.66□□□□□ -0.86
KPNA1-208ENST00000485027 ZC3H15Q8WU90 426 aaKnown RBP9.66□□□□□ -0.86
KPNA1-208ENST00000485027 APBB1O00213 710 aa9.66□□□□□ -0.86
KPNA1-208ENST00000485027 GTPBP6O43824 516 aaPredicted RBP9.65□□□□□ -0.86
KPNA1-208ENST00000485027 HSP90B1P14625 803 aaKnown RBP9.64□□□□□ -0.87
KPNA1-208ENST00000485027 SAMD1Q6SPF0 538 aaPredicted RBP9.64□□□□□ -0.87
KPNA1-208ENST00000485027 RAD21O60216 631 aa9.63□□□□□ -0.87
KPNA1-208ENST00000485027 RGS22Q8NE09 1264 aa9.63□□□□□ -0.87
KPNA1-208ENST00000485027 ZNF428Q96B54 188 aa9.63□□□□□ -0.87
KPNA1-208ENST00000485027 HMGB1P09429 215 aaKnown RBP9.6□□□□□ -0.87
KPNA1-208ENST00000485027 KCNV2Q8TDN2 545 aa9.59□□□□□ -0.87
KPNA1-208ENST00000485027 P3H3Q8IVL6 736 aa9.59□□□□□ -0.88
KPNA1-208ENST00000485027 MTMR7Q9Y216 660 aa9.59□□□□□ -0.88
KPNA1-208ENST00000485027 PUS7Q96PZ0 661 aaKnown RBP9.56□□□□□ -0.88
KPNA1-208ENST00000485027 ZNF219Q9P2Y4 722 aaPredicted RBP9.56□□□□□ -0.88
KPNA1-208ENST00000485027 FOXD4L5Q5VV16 416 aaPredicted RBP9.54□□□□□ -0.88
KPNA1-208ENST00000485027 FOXD4L4Q8WXT5 416 aaPredicted RBP9.54□□□□□ -0.88
KPNA1-208ENST00000485027 MKRN3Q13064 507 aaKnown RBP9.53□□□□□ -0.88
KPNA1-208ENST00000485027 CCDC82Q8N4S0 544 aa9.52□□□□□ -0.89
KPNA1-208ENST00000485027 GPBP1L1Q9HC44 474 aaPredicted RBP9.52□□□□□ -0.89
KPNA1-208ENST00000485027 RBM25P49756 843 aaKnown RBP9.52□□□□□ -0.89
KPNA1-208ENST00000485027 IL27Q8NEV9 243 aa9.52□□□□□ -0.89
KPNA1-208ENST00000485027 RNF25Q96BH1 459 aaPredicted RBP9.52□□□□□ -0.89
KPNA1-208ENST00000485027 CIZ1Q9ULV3 898 aaPredicted RBP9.51□□□□□ -0.89
KPNA1-208ENST00000485027 AEBP1Q8IUX7 1158 aa9.47□□□□□ -0.89
KPNA1-208ENST00000485027 TRAIPQ9BWF2 469 aa9.45□□□□□ -0.9
KPNA1-208ENST00000485027 DHX37Q8IY37 1157 aaKnown RBP9.44□□□□□ -0.9
KPNA1-208ENST00000485027 ZMYND10O75800 440 aa9.43□□□□□ -0.9
KPNA1-208ENST00000485027 MFAP1P55081 439 aaKnown RBP9.43□□□□□ -0.9
KPNA1-208ENST00000485027 TMCO4Q5TGY1 634 aa9.42□□□□□ -0.9
KPNA1-208ENST00000485027 PLCD3Q8N3E9 789 aa9.38□□□□□ -0.91
KPNA1-208ENST00000485027 WDR70Q9NW82 654 aa9.38□□□□□ -0.91
KPNA1-208ENST00000485027 GZF1Q9H116 711 aaPredicted RBP9.38□□□□□ -0.91
KPNA1-208ENST00000485027 RB1CC1Q8TDY2 1594 aa9.37□□□□□ -0.91
KPNA1-208ENST00000485027 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.37□□□□□ -0.91
KPNA1-208ENST00000485027 HNRNPUL2Q1KMD3 747 aaKnown RBP9.37□□□□□ -0.91
KPNA1-208ENST00000485027 DMRT2Q9Y5R5 561 aa9.37□□□□□ -0.91
KPNA1-208ENST00000485027 CADPS2Q86UW7 1296 aa9.36□□□□□ -0.91
KPNA1-208ENST00000485027 KDM4CQ9H3R0 1056 aa9.35□□□□□ -0.91
KPNA1-208ENST00000485027 NACADO15069 1562 aa9.35□□□□□ -0.91
KPNA1-208ENST00000485027 TRIM41Q8WV44 630 aa9.35□□□□□ -0.91
KPNA1-208ENST00000485027 SEMA3EO15041 775 aa9.34□□□□□ -0.91
KPNA1-208ENST00000485027 POLA2Q14181 598 aa9.34□□□□□ -0.91
KPNA1-208ENST00000485027 ZCCHC6Q5VYS8 1495 aaKnown RBP9.33□□□□□ -0.92
KPNA1-208ENST00000485027 CLUAP1Q96AJ1 413 aa9.33□□□□□ -0.92
KPNA1-208ENST00000485027 USP35Q9P2H5 1018 aa9.33□□□□□ -0.92
KPNA1-208ENST00000485027 U3KPZ7 1027 aaPredicted RBP9.32□□□□□ -0.92
KPNA1-208ENST00000485027 E9PSI1 815 aa9.31□□□□□ -0.92
KPNA1-208ENST00000485027 UNC13AQ9UPW8 1703 aa9.31□□□□□ -0.92
KPNA1-208ENST00000485027 TRAK2O60296 914 aa9.31□□□□□ -0.92
KPNA1-208ENST00000485027 BRD2P25440 801 aaKnown RBP9.31□□□□□ -0.92
KPNA1-208ENST00000485027 TESPA1A2RU30 521 aaPredicted RBP9.3□□□□□ -0.92
KPNA1-208ENST00000485027 BARGINQ6ZT62 677 aa9.3□□□□□ -0.92
KPNA1-208ENST00000485027 MYO15BQ96JP2 1530 aa9.29□□□□□ -0.92
KPNA1-208ENST00000485027 STK25O00506 426 aa9.29□□□□□ -0.92
KPNA1-208ENST00000485027 FAM177A1Q8N128 213 aaPredicted RBP9.28□□□□□ -0.92
KPNA1-208ENST00000485027 IRF5Q13568 498 aa9.27□□□□□ -0.93
KPNA1-208ENST00000485027 UBE2Q2Q8WVN8 375 aa9.27□□□□□ -0.93
KPNA1-208ENST00000485027 ONECUT3O60422 494 aaPredicted RBP9.26□□□□□ -0.93
KPNA1-208ENST00000485027 MIER1Q8N108 512 aa9.26□□□□□ -0.93
KPNA1-208ENST00000485027 RETREG2Q8NC44 543 aa9.26□□□□□ -0.93
KPNA1-208ENST00000485027 ZNF692Q9BU19 519 aaPredicted RBP9.26□□□□□ -0.93
KPNA1-208ENST00000485027 DCAF1Q9Y4B6 1507 aa9.25□□□□□ -0.93
KPNA1-208ENST00000485027 FLIIQ13045 1269 aa9.25□□□□□ -0.93
KPNA1-208ENST00000485027 AK7Q96M32 723 aa9.25□□□□□ -0.93
KPNA1-208ENST00000485027 POLR3GLQ9BT43 218 aa9.25□□□□□ -0.93
KPNA1-208ENST00000485027 A6NJR5 290 aa9.24□□□□□ -0.93
KPNA1-208ENST00000485027 RIOK3O14730 519 aaKnown RBP9.24□□□□□ -0.93
KPNA1-208ENST00000485027 FAM117AQ9C073 453 aa9.23□□□□□ -0.93
KPNA1-208ENST00000485027 ARHGEF1Q92888 912 aaKnown RBP9.22□□□□□ -0.93
KPNA1-208ENST00000485027 STAG3Q9UJ98 1225 aa9.22□□□□□ -0.93
KPNA1-208ENST00000485027 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.21□□□□□ -0.942e-8■■■□□ 18.6
KPNA1-208ENST00000485027 ZNF316A6NFI3 1004 aaPredicted RBP9.2□□□□□ -0.94
KPNA1-208ENST00000485027 ZNF777Q9ULD5 760 aaPredicted RBP9.2□□□□□ -0.94
KPNA1-208ENST00000485027 FBXW7Q969H0 707 aa9.19□□□□□ -0.94
KPNA1-208ENST00000485027 FAM9AQ8IZU1 332 aaPredicted RBP9.19□□□□□ -0.94
KPNA1-208ENST00000485027 PDE4DQ08499 809 aa9.18□□□□□ -0.94
KPNA1-208ENST00000485027 RSPH4AQ5TD94 716 aa9.18□□□□□ -0.94
KPNA1-208ENST00000485027 MSH5O43196 834 aa9.17□□□□□ -0.94
KPNA1-208ENST00000485027 PLEKHG3A1L390 1219 aa9.17□□□□□ -0.94
KPNA1-208ENST00000485027 TRIM66O15016 1216 aa9.16□□□□□ -0.94
KPNA1-208ENST00000485027 BICRAQ9NZM4 1560 aa9.15□□□□□ -0.95
KPNA1-208ENST00000485027 BCL11BQ9C0K0 894 aaPredicted RBP9.15□□□□□ -0.95
KPNA1-208ENST00000485027 RYDENQ9NUL5 291 aaKnown RBP9.15□□□□□ -0.95
KPNA1-208ENST00000485027 STK24Q9Y6E0 443 aa9.14□□□□□ -0.95
KPNA1-208ENST00000485027 KRI1Q8N9T8 703 aaKnown RBP9.12□□□□□ -0.95
KPNA1-208ENST00000485027 VGFO15240 615 aaPredicted RBP9.11□□□□□ -0.95
KPNA1-208ENST00000485027 CCDC97Q96F63 343 aaPredicted RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms