RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 FAM212AQ96EL1 285 aa9.19□□□□□ -0.94
VPS41-212ENST00000482217 TSPYL2Q9H2G4 693 aaPredicted RBP9.18□□□□□ -0.94
VPS41-212ENST00000482217 GABBR2O75899 941 aa9.17□□□□□ -0.94
VPS41-212ENST00000482217 SPOCK2Q92563 424 aa9.16□□□□□ -0.94
VPS41-212ENST00000482217 CCDC61Q9Y6R9 512 aa9.16□□□□□ -0.94
VPS41-212ENST00000482217 GSE1Q14687 1217 aa9.13□□□□□ -0.95
VPS41-212ENST00000482217 PHF12Q96QT6 1004 aa9.12□□□□□ -0.95
VPS41-212ENST00000482217 DCAF8Q5TAQ9 597 aa9.1□□□□□ -0.95
VPS41-212ENST00000482217 KIF12Q96FN5 646 aa9.08□□□□□ -0.96
VPS41-212ENST00000482217 SGIP1Q9BQI5 828 aa9.08□□□□□ -0.96
VPS41-212ENST00000482217 GALR2O43603 387 aaPredicted RBP9.04□□□□□ -0.96
VPS41-212ENST00000482217 MS4A3Q96HJ5 214 aa9.03□□□□□ -0.96
VPS41-212ENST00000482217 MAP3K13O43283 966 aa9.02□□□□□ -0.97
VPS41-212ENST00000482217 SLC24A1O60721 1099 aa9.02□□□□□ -0.97
VPS41-212ENST00000482217 TRIM41Q8WV44 630 aa9.02□□□□□ -0.97
VPS41-212ENST00000482217 DCBLD2Q96PD2 775 aa9.02□□□□□ -0.97
VPS41-212ENST00000482217 CHRM1P11229 460 aaPredicted RBP9.01□□□□□ -0.97
VPS41-212ENST00000482217 PKD2Q13563 968 aa9.01□□□□□ -0.97
VPS41-212ENST00000482217 CIZ1Q9ULV3 898 aaPredicted RBP9.01□□□□□ -0.97
VPS41-212ENST00000482217 PCDHB13Q9Y5F0 798 aa9□□□□□ -0.97
VPS41-212ENST00000482217 PYGBP11216 843 aa8.99□□□□□ -0.97
VPS41-212ENST00000482217 TIE1P35590 1138 aa8.95□□□□□ -0.98
VPS41-212ENST00000482217 ZNF467Q7Z7K2 595 aaPredicted RBP8.95□□□□□ -0.98
VPS41-212ENST00000482217 POTEIP0CG38 1075 aa8.94□□□□□ -0.98
VPS41-212ENST00000482217 ASTLQ6HA08 431 aaPredicted RBP8.94□□□□□ -0.98
VPS41-212ENST00000482217 IFNL1Q8IU54 200 aa8.94□□□□□ -0.98
VPS41-212ENST00000482217 ECM2O94769 699 aaPredicted RBP8.92□□□□□ -0.98
VPS41-212ENST00000482217 ATMINO43313 823 aaPredicted RBP8.9□□□□□ -0.98
VPS41-212ENST00000482217 BMP2KQ9NSY1 1161 aaPredicted RBP8.89□□□□□ -0.99
VPS41-212ENST00000482217 TRPC6Q9Y210 931 aa8.88□□□□□ -0.99
VPS41-212ENST00000482217 TTLL13PA6NNM8 815 aa8.87□□□□□ -0.99
VPS41-212ENST00000482217 DCAF8L2P0C7V8 631 aa8.87□□□□□ -0.99
VPS41-212ENST00000482217 PCDHB8Q9UN66 801 aa8.87□□□□□ -0.99
VPS41-212ENST00000482217 SLC39A7Q92504 469 aa8.85□□□□□ -0.99
VPS41-212ENST00000482217 TMEM106CQ9BVX2 250 aa8.85□□□□□ -0.99
VPS41-212ENST00000482217 C7P10643 843 aa8.84□□□□□ -0.99
VPS41-212ENST00000482217 ATN1P54259 1190 aaPredicted RBP8.84□□□□□ -0.99
VPS41-212ENST00000482217 PDAP1Q13442 181 aaKnown RBP8.83□□□□□ -1
VPS41-212ENST00000482217 TAOK2Q9UL54 1235 aa8.82□□□□□ -1
VPS41-212ENST00000482217 RIOK3O14730 519 aaKnown RBP8.81□□□□□ -1
VPS41-212ENST00000482217 PSEN1P49768 467 aa8.81□□□□□ -1
VPS41-212ENST00000482217 IER5LQ5T953 404 aa8.81□□□□□ -1
VPS41-212ENST00000482217 PELP1Q8IZL8 1130 aaKnown RBP8.81□□□□□ -1
VPS41-212ENST00000482217 TRIM35Q9UPQ4 493 aa8.81□□□□□ -1
VPS41-212ENST00000482217 RGL2O15211 777 aa8.8□□□□□ -1
VPS41-212ENST00000482217 METRNQ9UJH8 293 aa8.8□□□□□ -1
VPS41-212ENST00000482217 VGFO15240 615 aaPredicted RBP8.78□□□□□ -1
VPS41-212ENST00000482217 RNF25Q96BH1 459 aaPredicted RBP8.77□□□□□ -1.01
VPS41-212ENST00000482217 GOLGA2Q08379 1002 aa8.76□□□□□ -1.01
VPS41-212ENST00000482217 LHX8Q68G74 356 aa8.75□□□□□ -1.01
VPS41-212ENST00000482217 PLCB2Q00722 1185 aa8.74□□□□□ -1.01
VPS41-212ENST00000482217 SEC24BO95487 1268 aa8.73□□□□□ -1.01
VPS41-212ENST00000482217 BBXQ8WY36 941 aaPredicted RBP8.73□□□□□ -1.01
VPS41-212ENST00000482217 MKRN3Q13064 507 aaKnown RBP8.72□□□□□ -1.01
VPS41-212ENST00000482217 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.7□□□□□ -1.02
VPS41-212ENST00000482217 ZFP91Q96JP5 570 aaPredicted RBP8.7□□□□□ -1.02
VPS41-212ENST00000482217 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.7□□□□□ -1.02
VPS41-212ENST00000482217 PLCG2P16885 1265 aa8.69□□□□□ -1.02
VPS41-212ENST00000482217 IRX5P78411 483 aaPredicted RBP8.69□□□□□ -1.02
VPS41-212ENST00000482217 OCEL1Q9H607 264 aa8.69□□□□□ -1.02
VPS41-212ENST00000482217 CABP2Q9NPB3 220 aa8.69□□□□□ -1.02
VPS41-212ENST00000482217 CHGAP10645 457 aaKnown RBP8.67□□□□□ -1.02
VPS41-212ENST00000482217 PLSCR2Q9NRY7 297 aa8.67□□□□□ -1.02
VPS41-212ENST00000482217 POTEFA5A3E0 1075 aa8.66□□□□□ -1.02
VPS41-212ENST00000482217 MAMSTRQ6ZN01 415 aa8.66□□□□□ -1.02
VPS41-212ENST00000482217 HS6ST3Q8IZP7 471 aa8.66□□□□□ -1.02
VPS41-212ENST00000482217 COLQQ9Y215 455 aaPredicted RBP8.66□□□□□ -1.02
VPS41-212ENST00000482217 POTEB2H3BUK9 544 aa8.64□□□□□ -1.03
VPS41-212ENST00000482217 STK25O00506 426 aa8.64□□□□□ -1.03
VPS41-212ENST00000482217 ILDR1Q86SU0 546 aaPredicted RBP8.64□□□□□ -1.03
VPS41-212ENST00000482217 BCL11BQ9C0K0 894 aaPredicted RBP8.64□□□□□ -1.03
VPS41-212ENST00000482217 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.64□□□□□ -1.037e-10■■■■■ 44.2
VPS41-212ENST00000482217 DNAJC5Q9H3Z4 198 aa8.63□□□□□ -1.03
VPS41-212ENST00000482217 SOX12O15370 315 aa8.62□□□□□ -1.03
VPS41-212ENST00000482217 STK24Q9Y6E0 443 aa8.62□□□□□ -1.03
VPS41-212ENST00000482217 EFCAB3Q8N7B9 438 aa8.61□□□□□ -1.03
VPS41-212ENST00000482217 PDCD7Q8N8D1 485 aaKnown RBP8.61□□□□□ -1.03
VPS41-212ENST00000482217 SCUBE2Q9NQ36 999 aa8.61□□□□□ -1.03
VPS41-212ENST00000482217 HAP1P54257 671 aaPredicted RBP8.59□□□□□ -1.03
VPS41-212ENST00000482217 PAXIP1Q6ZW49 1069 aaPredicted RBP8.59□□□□□ -1.03
VPS41-212ENST00000482217 SPRYD3Q8NCJ5 442 aa8.59□□□□□ -1.03
VPS41-212ENST00000482217 L3MBTL3Q96JM7 780 aaPredicted RBP8.59□□□□□ -1.03
VPS41-212ENST00000482217 POTEJP0CG39 1038 aa8.57□□□□□ -1.04
VPS41-212ENST00000482217 OTUD5Q96G74 571 aa8.57□□□□□ -1.04
VPS41-212ENST00000482217 CFAP44Q96MT7 982 aa8.56□□□□□ -1.04
VPS41-212ENST00000482217 NLRP6P59044 892 aa8.55□□□□□ -1.04
VPS41-212ENST00000482217 G3V3G9 751 aa8.53□□□□□ -1.04
VPS41-212ENST00000482217 PHF8Q9UPP1 1060 aa8.52□□□□□ -1.05
VPS41-212ENST00000482217 VSIG10Q8N0Z9 540 aa8.51□□□□□ -1.05
VPS41-212ENST00000482217 NKX1-1Q15270 411 aaPredicted RBP8.5□□□□□ -1.05
VPS41-212ENST00000482217 C3orf67Q6ZVT6 689 aa8.5□□□□□ -1.05
VPS41-212ENST00000482217 FBXO22Q8NEZ5 403 aa8.5□□□□□ -1.05
VPS41-212ENST00000482217 MFRPQ9BY79 579 aa8.5□□□□□ -1.05
VPS41-212ENST00000482217 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.5□□□□□ -1.05
VPS41-212ENST00000482217 BOLA1Q9Y3E2 137 aa8.5□□□□□ -1.05
VPS41-212ENST00000482217 DPY19L2Q6NUT2 758 aa8.49□□□□□ -1.05
VPS41-212ENST00000482217 RYDENQ9NUL5 291 aaKnown RBP8.49□□□□□ -1.05
VPS41-212ENST00000482217 MS4A4AQ96JQ5 239 aa8.48□□□□□ -1.05
VPS41-212ENST00000482217 TMEM121BQ9BXQ6 578 aaPredicted RBP8.47□□□□□ -1.05
VPS41-212ENST00000482217 GTPBP6O43824 516 aaPredicted RBP8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms