RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 RNF25Q96BH1 459 aaPredicted RBP14.53□□□□□ -0.08
SF3B1-210ENST00000482158 FARP1Q9Y4F1 1045 aaPredicted RBP14.53□□□□□ -0.08
SF3B1-210ENST00000482158 PLCB2Q00722 1185 aa14.5□□□□□ -0.09
SF3B1-210ENST00000482158 PIP4P2Q8N4L2 257 aa14.47□□□□□ -0.09
SF3B1-210ENST00000482158 CHRM1P11229 460 aaPredicted RBP14.45□□□□□ -0.1
SF3B1-210ENST00000482158 BBXQ8WY36 941 aaPredicted RBP14.43□□□□□ -0.1
SF3B1-210ENST00000482158 PYGBP11216 843 aa14.39□□□□□ -0.11
SF3B1-210ENST00000482158 RIOK3O14730 519 aaKnown RBP14.38□□□□□ -0.11
SF3B1-210ENST00000482158 CHGAP10645 457 aaKnown RBP14.38□□□□□ -0.11
SF3B1-210ENST00000482158 TSPYL2Q9H2G4 693 aaPredicted RBP14.38□□□□□ -0.11
SF3B1-210ENST00000482158 HS6ST3Q8IZP7 471 aa14.34□□□□□ -0.11
SF3B1-210ENST00000482158 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.31□□□□□ -0.12
SF3B1-210ENST00000482158 CCDC61Q9Y6R9 512 aa14.31□□□□□ -0.12
SF3B1-210ENST00000482158 VGFO15240 615 aaPredicted RBP14.27□□□□□ -0.13
SF3B1-210ENST00000482158 DNAJC5Q9H3Z4 198 aa14.27□□□□□ -0.13
SF3B1-210ENST00000482158 PAXIP1Q6ZW49 1069 aaPredicted RBP14.26□□□□□ -0.13
SF3B1-210ENST00000482158 HAP1P54257 671 aaPredicted RBP14.25□□□□□ -0.13
SF3B1-210ENST00000482158 SGIP1Q9BQI5 828 aa14.25□□□□□ -0.13
SF3B1-210ENST00000482158 TAOK2Q9UL54 1235 aa14.23□□□□□ -0.13
SF3B1-210ENST00000482158 CFAP44Q96MT7 982 aa14.22□□□□□ -0.13
SF3B1-210ENST00000482158 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.21□□□□□ -0.13
SF3B1-210ENST00000482158 ZFP91Q96JP5 570 aaPredicted RBP14.21□□□□□ -0.13
SF3B1-210ENST00000482158 NKX1-1Q15270 411 aaPredicted RBP14.2□□□□□ -0.14
SF3B1-210ENST00000482158 STK25O00506 426 aa14.19□□□□□ -0.14
SF3B1-210ENST00000482158 SPRYD3Q8NCJ5 442 aa14.19□□□□□ -0.14
SF3B1-210ENST00000482158 PAK3O75914 559 aaPredicted RBP14.16□□□□□ -0.14
SF3B1-210ENST00000482158 ZNF467Q7Z7K2 595 aaPredicted RBP14.16□□□□□ -0.14
SF3B1-210ENST00000482158 PCDHB8Q9UN66 801 aa14.16□□□□□ -0.14
SF3B1-210ENST00000482158 PCDHB13Q9Y5F0 798 aa14.16□□□□□ -0.14
SF3B1-210ENST00000482158 BCL11BQ9C0K0 894 aaPredicted RBP14.15□□□□□ -0.14
SF3B1-210ENST00000482158 CD44P16070 742 aaKnown RBP14.13□□□□□ -0.15
SF3B1-210ENST00000482158 KIF12Q96FN5 646 aa14.13□□□□□ -0.15
SF3B1-210ENST00000482158 STK24Q9Y6E0 443 aa14.12□□□□□ -0.15
SF3B1-210ENST00000482158 MAP3K13O43283 966 aa14.11□□□□□ -0.15
SF3B1-210ENST00000482158 ZNF579Q8NAF0 562 aaKnown RBP14.11□□□□□ -0.15
SF3B1-210ENST00000482158 ZRANB1Q9UGI0 708 aa14.11□□□□□ -0.15
SF3B1-210ENST00000482158 IFNL1Q8IU54 200 aa14.09□□□□□ -0.15
SF3B1-210ENST00000482158 PDAP1Q13442 181 aaKnown RBP14.08□□□□□ -0.16
SF3B1-210ENST00000482158 C19orf67A6NJJ6 358 aa14.07□□□□□ -0.16
SF3B1-210ENST00000482158 GTPBP6O43824 516 aaPredicted RBP14.07□□□□□ -0.16
SF3B1-210ENST00000482158 TSHZ2Q9NRE2 1034 aa14.07□□□□□ -0.16
SF3B1-210ENST00000482158 VSIG10Q8N0Z9 540 aa14.06□□□□□ -0.16
SF3B1-210ENST00000482158 PHF12Q96QT6 1004 aa14.06□□□□□ -0.16
SF3B1-210ENST00000482158 KDM2AQ9Y2K7 1162 aa14.04□□□□□ -0.16
SF3B1-210ENST00000482158 PSEN1P49768 467 aa14.03□□□□□ -0.16
SF3B1-210ENST00000482158 SP7Q8TDD2 431 aaPredicted RBP14.03□□□□□ -0.16
SF3B1-210ENST00000482158 MS4A3Q96HJ5 214 aa13.9□□□□□ -0.18
SF3B1-210ENST00000482158 EVX2Q03828 476 aa13.89□□□□□ -0.19
SF3B1-210ENST00000482158 TRPC6Q9Y210 931 aa13.89□□□□□ -0.19
SF3B1-210ENST00000482158 MFRPQ9BY79 579 aa13.87□□□□□ -0.19
SF3B1-210ENST00000482158 RYDENQ9NUL5 291 aaKnown RBP13.86□□□□□ -0.19
SF3B1-210ENST00000482158 CABP2Q9NPB3 220 aa13.85□□□□□ -0.19
SF3B1-210ENST00000482158 EFCAB3Q8N7B9 438 aa13.84□□□□□ -0.19
SF3B1-210ENST00000482158 HAX1O00165 279 aa13.83□□□□□ -0.2
SF3B1-210ENST00000482158 FBXO22Q8NEZ5 403 aa13.79□□□□□ -0.2
SF3B1-210ENST00000482158 TMEM106CQ9BVX2 250 aa13.79□□□□□ -0.2
SF3B1-210ENST00000482158 GALR2O43603 387 aaPredicted RBP13.77□□□□□ -0.21
SF3B1-210ENST00000482158 SOX12O15370 315 aa13.76□□□□□ -0.21
SF3B1-210ENST00000482158 PHF8Q9UPP1 1060 aa13.76□□□□□ -0.21
SF3B1-210ENST00000482158 PPP1R37O75864 691 aa13.74□□□□□ -0.21
SF3B1-210ENST00000482158 TIE1P35590 1138 aa13.73□□□□□ -0.21
SF3B1-210ENST00000482158 TTLL13PA6NNM8 815 aa13.72□□□□□ -0.21
SF3B1-210ENST00000482158 NLRP6P59044 892 aa13.72□□□□□ -0.21
SF3B1-210ENST00000482158 CADPS2Q86UW7 1296 aa13.71□□□□□ -0.21
SF3B1-210ENST00000482158 BMP2KQ9NSY1 1161 aaPredicted RBP13.71□□□□□ -0.21
SF3B1-210ENST00000482158 MS4A4AQ96JQ5 239 aa13.69□□□□□ -0.22
SF3B1-210ENST00000482158 BCANQ96GW7 911 aa13.68□□□□□ -0.22
SF3B1-210ENST00000482158 CLCN6P51797 869 aa13.66□□□□□ -0.22
SF3B1-210ENST00000482158 GOLGA2Q08379 1002 aa13.63□□□□□ -0.23
SF3B1-210ENST00000482158 ILDR1Q86SU0 546 aaPredicted RBP13.62□□□□□ -0.23
SF3B1-210ENST00000482158 MKRN3Q13064 507 aaKnown RBP13.61□□□□□ -0.23
SF3B1-210ENST00000482158 TRIM35Q9UPQ4 493 aa13.6□□□□□ -0.23
SF3B1-210ENST00000482158 ATN1P54259 1190 aaPredicted RBP13.58□□□□□ -0.24
SF3B1-210ENST00000482158 GABBR2O75899 941 aa13.57□□□□□ -0.24
SF3B1-210ENST00000482158 ATMINO43313 823 aaPredicted RBP13.56□□□□□ -0.24
SF3B1-210ENST00000482158 ASTLQ6HA08 431 aaPredicted RBP13.55□□□□□ -0.24
SF3B1-210ENST00000482158 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.53□□□□□ -0.242e-27■■□□□ 13.6
SF3B1-210ENST00000482158 NCKAP5LQ9HCH0 1330 aa13.48□□□□□ -0.25
SF3B1-210ENST00000482158 DPY19L2Q6NUT2 758 aa13.48□□□□□ -0.25
SF3B1-210ENST00000482158 PDCD7Q8N8D1 485 aaKnown RBP13.47□□□□□ -0.25
SF3B1-210ENST00000482158 IRX5P78411 483 aaPredicted RBP13.46□□□□□ -0.25
SF3B1-210ENST00000482158 PELP1Q8IZL8 1130 aaKnown RBP13.44□□□□□ -0.26
SF3B1-210ENST00000482158 WDR70Q9NW82 654 aa13.44□□□□□ -0.26
SF3B1-210ENST00000482158 IER5LQ5T953 404 aa13.42□□□□□ -0.26
SF3B1-210ENST00000482158 KCNV2Q8TDN2 545 aa13.42□□□□□ -0.26
SF3B1-210ENST00000482158 CRISPLD2Q9H0B8 497 aa13.42□□□□□ -0.26
SF3B1-210ENST00000482158 NBR1Q14596 966 aa13.4□□□□□ -0.26
SF3B1-210ENST00000482158 OCEL1Q9H607 264 aa13.39□□□□□ -0.27
SF3B1-210ENST00000482158 MFSD10Q14728 455 aa13.38□□□□□ -0.27
SF3B1-210ENST00000482158 P3H3Q8IVL6 736 aa13.38□□□□□ -0.27
SF3B1-210ENST00000482158 PDE4AP27815 886 aa13.37□□□□□ -0.27
SF3B1-210ENST00000482158 LARP6Q9BRS8 491 aaKnown RBP13.37□□□□□ -0.27
SF3B1-210ENST00000482158 DCBLD2Q96PD2 775 aa13.36□□□□□ -0.27
SF3B1-210ENST00000482158 POTEIP0CG38 1075 aa13.35□□□□□ -0.27
SF3B1-210ENST00000482158 MICALL2Q8IY33 904 aa13.35□□□□□ -0.27
SF3B1-210ENST00000482158 PRKCSHP14314 528 aaPredicted RBP13.34□□□□□ -0.27
SF3B1-210ENST00000482158 TMEM121BQ9BXQ6 578 aaPredicted RBP13.33□□□□□ -0.28
SF3B1-210ENST00000482158 E2F4Q16254 413 aa13.32□□□□□ -0.28
SF3B1-210ENST00000482158 COLQQ9Y215 455 aaPredicted RBP13.32□□□□□ -0.28
SF3B1-210ENST00000482158 POTEFA5A3E0 1075 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms