RNA–Protein interactions for RNA: ENST00000480956.1

LSM5-210, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM5, Length 1,736 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM5-210ENST00000480956 KLHL34Q8N239 644 aa14.1□□□□□ -0.15
LSM5-210ENST00000480956 AKT1S1Q96B36 256 aa14.03□□□□□ -0.16
LSM5-210ENST00000480956 PABPN1Q86U42 306 aaKnown RBP eCLIP14.01□□□□□ -0.17
LSM5-210ENST00000480956 TRIM26Q12899 539 aaPredicted RBP13.98□□□□□ -0.17
LSM5-210ENST00000480956 REM2Q8IYK8 340 aaPredicted RBP13.97□□□□□ -0.17
LSM5-210ENST00000480956 UBTFP17480 764 aaKnown RBP13.93□□□□□ -0.18
LSM5-210ENST00000480956 RGL2O15211 777 aa13.9□□□□□ -0.18
LSM5-210ENST00000480956 SPOCK2Q92563 424 aa13.86□□□□□ -0.19
LSM5-210ENST00000480956 PITPNM1O00562 1244 aa13.83□□□□□ -0.2
LSM5-210ENST00000480956 CHGAP10645 457 aaKnown RBP13.83□□□□□ -0.2
LSM5-210ENST00000480956 HRCP23327 699 aa13.78□□□□□ -0.2
LSM5-210ENST00000480956 PELP1Q8IZL8 1130 aaKnown RBP13.76□□□□□ -0.21
LSM5-210ENST00000480956 SPDYE1Q8NFV5 336 aaPredicted RBP13.74□□□□□ -0.21
LSM5-210ENST00000480956 BRPF1P55201 1214 aaPredicted RBP13.73□□□□□ -0.21
LSM5-210ENST00000480956 CLEC11AQ9Y240 323 aa13.72□□□□□ -0.21
LSM5-210ENST00000480956 CHRDL2Q6WN34 429 aa13.65□□□□□ -0.22
LSM5-210ENST00000480956 STAG3Q9UJ98 1225 aa13.63□□□□□ -0.23
LSM5-210ENST00000480956 TTBK1Q5TCY1 1321 aaPredicted RBP13.62□□□□□ -0.23
LSM5-210ENST00000480956 PRR29P0C7W0 189 aa13.58□□□□□ -0.24
LSM5-210ENST00000480956 FXR2P51116 673 aaKnown RBP eCLIP13.58□□□□□ -0.24
LSM5-210ENST00000480956 MYT1Q01538 1121 aa13.58□□□□□ -0.24
LSM5-210ENST00000480956 NEUROD2Q15784 382 aa13.56□□□□□ -0.24
LSM5-210ENST00000480956 HS6ST3Q8IZP7 471 aa13.56□□□□□ -0.24
LSM5-210ENST00000480956 LMOD2Q6P5Q4 547 aa13.55□□□□□ -0.24
LSM5-210ENST00000480956 CREBZFQ9NS37 354 aa13.55□□□□□ -0.24
LSM5-210ENST00000480956 PIP4P2Q8N4L2 257 aa13.54□□□□□ -0.24
LSM5-210ENST00000480956 CCDC9Q9Y3X0 531 aaKnown RBP13.53□□□□□ -0.24
LSM5-210ENST00000480956 CHADLQ6NUI6 762 aa13.5□□□□□ -0.25
LSM5-210ENST00000480956 RSPH6AQ9H0K4 717 aa13.5□□□□□ -0.25
LSM5-210ENST00000480956 ZMYND15Q9H091 742 aa13.5□□□□□ -0.25
LSM5-210ENST00000480956 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.49□□□□□ -0.25
LSM5-210ENST00000480956 MNX1P50219 401 aaPredicted RBP13.48□□□□□ -0.25
LSM5-210ENST00000480956 P3H3Q8IVL6 736 aa13.47□□□□□ -0.25
LSM5-210ENST00000480956 ZBTB7CA1YPR0 619 aa13.44□□□□□ -0.26
LSM5-210ENST00000480956 ARID3AQ99856 593 aa13.44□□□□□ -0.26
LSM5-210ENST00000480956 MIER1Q8N108 512 aa13.44□□□□□ -0.26
LSM5-210ENST00000480956 PRKAR2AP13861 404 aaKnown RBP13.43□□□□□ -0.26
LSM5-210ENST00000480956 CIZ1Q9ULV3 898 aaPredicted RBP13.41□□□□□ -0.26
LSM5-210ENST00000480956 GTPBP6O43824 516 aaPredicted RBP13.38□□□□□ -0.27
LSM5-210ENST00000480956 PLCD3Q8N3E9 789 aa13.38□□□□□ -0.27
LSM5-210ENST00000480956 NKX1-1Q15270 411 aaPredicted RBP13.36□□□□□ -0.27
LSM5-210ENST00000480956 PDIA4P13667 645 aaKnown RBP13.33□□□□□ -0.27
LSM5-210ENST00000480956 FARP1Q9Y4F1 1045 aaPredicted RBP13.31□□□□□ -0.28
LSM5-210ENST00000480956 TRIM41Q8WV44 630 aa13.3□□□□□ -0.28
LSM5-210ENST00000480956 SLC24A3Q9HC58 644 aa13.29□□□□□ -0.28
LSM5-210ENST00000480956 ZC3H15Q8WU90 426 aaKnown RBP13.27□□□□□ -0.28
LSM5-210ENST00000480956 POTEHQ6S545 545 aa13.25□□□□□ -0.29
LSM5-210ENST00000480956 C1orf115Q9H7X2 142 aa13.25□□□□□ -0.29
LSM5-210ENST00000480956 LOC105371045A0A1W2PR82 267 aa13.24□□□□□ -0.29
LSM5-210ENST00000480956 NUBP1P53384 320 aa13.24□□□□□ -0.29
LSM5-210ENST00000480956 KCNV2Q8TDN2 545 aa13.22□□□□□ -0.29
LSM5-210ENST00000480956 PLEKHG5O94827 1062 aa13.19□□□□□ -0.3
LSM5-210ENST00000480956 RASEFQ8IZ41 740 aa13.18□□□□□ -0.3
LSM5-210ENST00000480956 NECTIN2Q92692 538 aa13.18□□□□□ -0.3
LSM5-210ENST00000480956 RNF25Q96BH1 459 aaPredicted RBP13.17□□□□□ -0.3
LSM5-210ENST00000480956 ZBTB47Q9UFB7 747 aaPredicted RBP13.15□□□□□ -0.3
LSM5-210ENST00000480956 EVX2Q03828 476 aa13.13□□□□□ -0.31
LSM5-210ENST00000480956 WDR70Q9NW82 654 aa13.13□□□□□ -0.31
LSM5-210ENST00000480956 SHROOM4Q9ULL8 1493 aa13.12□□□□□ -0.31
LSM5-210ENST00000480956 ARID3CA6NKF2 412 aa13.11□□□□□ -0.31
LSM5-210ENST00000480956 APBB1O00213 710 aa13.11□□□□□ -0.31
LSM5-210ENST00000480956 RYDENQ9NUL5 291 aaKnown RBP13.11□□□□□ -0.31
LSM5-210ENST00000480956 C19orf67A6NJJ6 358 aa13.1□□□□□ -0.31
LSM5-210ENST00000480956 EIF5BO60841 1220 aaKnown RBP13.07□□□□□ -0.32
LSM5-210ENST00000480956 STK25O00506 426 aa13.06□□□□□ -0.32
LSM5-210ENST00000480956 RIOK3O14730 519 aaKnown RBP13.04□□□□□ -0.32
LSM5-210ENST00000480956 KCTD17Q8N5Z5 321 aa13.04□□□□□ -0.32
LSM5-210ENST00000480956 CD44P16070 742 aaKnown RBP13.02□□□□□ -0.32
LSM5-210ENST00000480956 TSPYL2Q9H2G4 693 aaPredicted RBP13.02□□□□□ -0.32
LSM5-210ENST00000480956 IL27Q8NEV9 243 aa13.02□□□□□ -0.33
LSM5-210ENST00000480956 ZMYND10O75800 440 aa13.01□□□□□ -0.33
LSM5-210ENST00000480956 CCDC61Q9Y6R9 512 aa13□□□□□ -0.33
LSM5-210ENST00000480956 HAX1O00165 279 aa12.99□□□□□ -0.33
LSM5-210ENST00000480956 IGSF3O75054 1194 aa12.99□□□□□ -0.33
LSM5-210ENST00000480956 RAD21O60216 631 aa12.98□□□□□ -0.33
LSM5-210ENST00000480956 HMGB1P09429 215 aaKnown RBP12.98□□□□□ -0.33
LSM5-210ENST00000480956 DCAF8Q5TAQ9 597 aa12.96□□□□□ -0.33
LSM5-210ENST00000480956 GPBP1L1Q9HC44 474 aaPredicted RBP12.96□□□□□ -0.33
LSM5-210ENST00000480956 FAM212AQ96EL1 285 aa12.95□□□□□ -0.34
LSM5-210ENST00000480956 ZRANB1Q9UGI0 708 aa12.95□□□□□ -0.34
LSM5-210ENST00000480956 GSE1Q14687 1217 aa12.94□□□□□ -0.34
LSM5-210ENST00000480956 MKRN3Q13064 507 aaKnown RBP12.93□□□□□ -0.34
LSM5-210ENST00000480956 ARHGEF1Q92888 912 aaKnown RBP12.92□□□□□ -0.34
LSM5-210ENST00000480956 VGFO15240 615 aaPredicted RBP12.91□□□□□ -0.34
LSM5-210ENST00000480956 PHF12Q96QT6 1004 aa12.91□□□□□ -0.34
LSM5-210ENST00000480956 TESPA1A2RU30 521 aaPredicted RBP12.9□□□□□ -0.34
LSM5-210ENST00000480956 CCDC82Q8N4S0 544 aa12.9□□□□□ -0.34
LSM5-210ENST00000480956 CDK11BP21127 795 aaKnown RBP12.89□□□□□ -0.35
LSM5-210ENST00000480956 CDK11AQ9UQ88 783 aaPredicted RBP12.89□□□□□ -0.35
LSM5-210ENST00000480956 PYGBP11216 843 aa12.88□□□□□ -0.35
LSM5-210ENST00000480956 ZNF579Q8NAF0 562 aaKnown RBP12.88□□□□□ -0.35
LSM5-210ENST00000480956 CADPS2Q86UW7 1296 aa12.88□□□□□ -0.35
LSM5-210ENST00000480956 RGS22Q8NE09 1264 aa12.88□□□□□ -0.35
LSM5-210ENST00000480956 SEMA3EO15041 775 aa12.87□□□□□ -0.35
LSM5-210ENST00000480956 BARGINQ6ZT62 677 aa12.87□□□□□ -0.35
LSM5-210ENST00000480956 TRAIPQ9BWF2 469 aa12.87□□□□□ -0.35
LSM5-210ENST00000480956 KDM4CQ9H3R0 1056 aa12.87□□□□□ -0.35
LSM5-210ENST00000480956 AK7Q96M32 723 aa12.86□□□□□ -0.35
LSM5-210ENST00000480956 STK24Q9Y6E0 443 aa12.86□□□□□ -0.35
LSM5-210ENST00000480956 KIF12Q96FN5 646 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms