RNA–Protein interactions for RNA: ENST00000476215.5

PTCD3-211, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 754 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-211ENST00000476215 PHF12Q96QT6 1004 aa14.19□□□□□ -0.14
PTCD3-211ENST00000476215 KLHL34Q8N239 644 aa14.17□□□□□ -0.14
PTCD3-211ENST00000476215 FAM212AQ96EL1 285 aa14.16□□□□□ -0.14
PTCD3-211ENST00000476215 SPOCK2Q92563 424 aa14.13□□□□□ -0.15
PTCD3-211ENST00000476215 KIF12Q96FN5 646 aa14.12□□□□□ -0.15
PTCD3-211ENST00000476215 GALR2O43603 387 aaPredicted RBP14.09□□□□□ -0.15
PTCD3-211ENST00000476215 GSE1Q14687 1217 aa14.06□□□□□ -0.16
PTCD3-211ENST00000476215 SGIP1Q9BQI5 828 aa14.06□□□□□ -0.16
PTCD3-211ENST00000476215 MS4A3Q96HJ5 214 aa14.04□□□□□ -0.16
PTCD3-211ENST00000476215 DCAF8Q5TAQ9 597 aa14.03□□□□□ -0.16
PTCD3-211ENST00000476215 POTEIP0CG38 1075 aa14.02□□□□□ -0.17
PTCD3-211ENST00000476215 MAP3K13O43283 966 aa14.01□□□□□ -0.17
PTCD3-211ENST00000476215 CHRM1P11229 460 aaPredicted RBP13.98□□□□□ -0.17
PTCD3-211ENST00000476215 DCBLD2Q96PD2 775 aa13.93□□□□□ -0.18
PTCD3-211ENST00000476215 PCDHB13Q9Y5F0 798 aa13.92□□□□□ -0.18
PTCD3-211ENST00000476215 ASTLQ6HA08 431 aaPredicted RBP13.91□□□□□ -0.18
PTCD3-211ENST00000476215 PYGBP11216 843 aa13.9□□□□□ -0.18
PTCD3-211ENST00000476215 IFNL1Q8IU54 200 aa13.89□□□□□ -0.19
PTCD3-211ENST00000476215 TIE1P35590 1138 aa13.88□□□□□ -0.19
PTCD3-211ENST00000476215 TRIM41Q8WV44 630 aa13.88□□□□□ -0.19
PTCD3-211ENST00000476215 TRPC6Q9Y210 931 aa13.87□□□□□ -0.19
PTCD3-211ENST00000476215 ATMINO43313 823 aaPredicted RBP13.86□□□□□ -0.19
PTCD3-211ENST00000476215 CIZ1Q9ULV3 898 aaPredicted RBP13.86□□□□□ -0.19
PTCD3-211ENST00000476215 BMP2KQ9NSY1 1161 aaPredicted RBP13.84□□□□□ -0.19
PTCD3-211ENST00000476215 ZNF467Q7Z7K2 595 aaPredicted RBP13.81□□□□□ -0.2
PTCD3-211ENST00000476215 PELP1Q8IZL8 1130 aaKnown RBP13.79□□□□□ -0.2
PTCD3-211ENST00000476215 TTLL13PA6NNM8 815 aa13.78□□□□□ -0.2
PTCD3-211ENST00000476215 ATN1P54259 1190 aaPredicted RBP13.77□□□□□ -0.21
PTCD3-211ENST00000476215 PCDHB8Q9UN66 801 aa13.76□□□□□ -0.21
PTCD3-211ENST00000476215 SLC39A7Q92504 469 aa13.71□□□□□ -0.21
PTCD3-211ENST00000476215 PKD2Q13563 968 aa13.7□□□□□ -0.22
PTCD3-211ENST00000476215 C7P10643 843 aa13.69□□□□□ -0.22
PTCD3-211ENST00000476215 TMEM106CQ9BVX2 250 aa13.69□□□□□ -0.22
PTCD3-211ENST00000476215 PDAP1Q13442 181 aaKnown RBP13.66□□□□□ -0.22
PTCD3-211ENST00000476215 IER5LQ5T953 404 aa13.66□□□□□ -0.22
PTCD3-211ENST00000476215 RNF25Q96BH1 459 aaPredicted RBP13.66□□□□□ -0.22
PTCD3-211ENST00000476215 TRIM35Q9UPQ4 493 aa13.66□□□□□ -0.22
PTCD3-211ENST00000476215 METRNQ9UJH8 293 aa13.64□□□□□ -0.23
PTCD3-211ENST00000476215 PSEN1P49768 467 aa13.63□□□□□ -0.23
PTCD3-211ENST00000476215 LHX8Q68G74 356 aa13.62□□□□□ -0.23
PTCD3-211ENST00000476215 RIOK3O14730 519 aaKnown RBP13.61□□□□□ -0.23
PTCD3-211ENST00000476215 POTEFA5A3E0 1075 aa13.59□□□□□ -0.23
PTCD3-211ENST00000476215 ECM2O94769 699 aaPredicted RBP13.57□□□□□ -0.24
PTCD3-211ENST00000476215 POTEB2H3BUK9 544 aa13.55□□□□□ -0.24
PTCD3-211ENST00000476215 VGFO15240 615 aaPredicted RBP13.54□□□□□ -0.24
PTCD3-211ENST00000476215 AMER1Q5JTC6 1135 aaPredicted RBP13.54□□□□□ -0.24
PTCD3-211ENST00000476215 IRX5P78411 483 aaPredicted RBP13.53□□□□□ -0.24
PTCD3-211ENST00000476215 RTN4Q9NQC3 1192 aaKnown RBP13.51□□□□□ -0.25
PTCD3-211ENST00000476215 COLQQ9Y215 455 aaPredicted RBP13.51□□□□□ -0.25
PTCD3-211ENST00000476215 RGL2O15211 777 aa13.49□□□□□ -0.25
PTCD3-211ENST00000476215 ILDR1Q86SU0 546 aaPredicted RBP13.49□□□□□ -0.25
PTCD3-211ENST00000476215 TAOK2Q9UL54 1235 aa13.48□□□□□ -0.25
PTCD3-211ENST00000476215 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.46□□□□□ -0.25
PTCD3-211ENST00000476215 POTEJP0CG39 1038 aa13.46□□□□□ -0.25
PTCD3-211ENST00000476215 ZFP91Q96JP5 570 aaPredicted RBP13.46□□□□□ -0.25
PTCD3-211ENST00000476215 SEC24BO95487 1268 aa13.44□□□□□ -0.26
PTCD3-211ENST00000476215 OCEL1Q9H607 264 aa13.44□□□□□ -0.26
PTCD3-211ENST00000476215 CABP2Q9NPB3 220 aa13.43□□□□□ -0.26
PTCD3-211ENST00000476215 MKRN3Q13064 507 aaKnown RBP13.42□□□□□ -0.26
PTCD3-211ENST00000476215 PDCD7Q8N8D1 485 aaKnown RBP13.42□□□□□ -0.26
PTCD3-211ENST00000476215 PLCG2P16885 1265 aa13.41□□□□□ -0.26
PTCD3-211ENST00000476215 GOLGA2Q08379 1002 aa13.41□□□□□ -0.26
PTCD3-211ENST00000476215 OTUD5Q96G74 571 aa13.4□□□□□ -0.26
PTCD3-211ENST00000476215 MAMSTRQ6ZN01 415 aa13.37□□□□□ -0.27
PTCD3-211ENST00000476215 EFCAB3Q8N7B9 438 aa13.35□□□□□ -0.27
PTCD3-211ENST00000476215 BCL11BQ9C0K0 894 aaPredicted RBP13.35□□□□□ -0.27
PTCD3-211ENST00000476215 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.34□□□□□ -0.276e-10■□□□□ 8.9
PTCD3-211ENST00000476215 SOX12O15370 315 aa13.33□□□□□ -0.28
PTCD3-211ENST00000476215 STK25O00506 426 aa13.3□□□□□ -0.28
PTCD3-211ENST00000476215 HS6ST3Q8IZP7 471 aa13.28□□□□□ -0.28
PTCD3-211ENST00000476215 SCUBE2Q9NQ36 999 aa13.28□□□□□ -0.28
PTCD3-211ENST00000476215 STK24Q9Y6E0 443 aa13.28□□□□□ -0.28
PTCD3-211ENST00000476215 DNAJC5Q9H3Z4 198 aa13.26□□□□□ -0.29
PTCD3-211ENST00000476215 L3MBTL3Q96JM7 780 aaPredicted RBP13.25□□□□□ -0.29
PTCD3-211ENST00000476215 FBXO22Q8NEZ5 403 aa13.23□□□□□ -0.29
PTCD3-211ENST00000476215 MS4A4AQ96JQ5 239 aa13.23□□□□□ -0.29
PTCD3-211ENST00000476215 DPY19L2Q6NUT2 758 aa13.21□□□□□ -0.29
PTCD3-211ENST00000476215 PHF8Q9UPP1 1060 aa13.21□□□□□ -0.29
PTCD3-211ENST00000476215 MFRPQ9BY79 579 aa13.2□□□□□ -0.3
PTCD3-211ENST00000476215 NLRP6P59044 892 aa13.19□□□□□ -0.3
PTCD3-211ENST00000476215 TMEM121BQ9BXQ6 578 aaPredicted RBP13.19□□□□□ -0.3
PTCD3-211ENST00000476215 BOLA1Q9Y3E2 137 aa13.15□□□□□ -0.3
PTCD3-211ENST00000476215 CHGAP10645 457 aaKnown RBP13.13□□□□□ -0.31
PTCD3-211ENST00000476215 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.12□□□□□ -0.31
PTCD3-211ENST00000476215 MICALL2Q8IY33 904 aa13.09□□□□□ -0.31
PTCD3-211ENST00000476215 C3orf67Q6ZVT6 689 aa13.08□□□□□ -0.32
PTCD3-211ENST00000476215 SLAIN1Q8ND83 568 aa13.08□□□□□ -0.32
PTCD3-211ENST00000476215 NKX1-1Q15270 411 aaPredicted RBP13.07□□□□□ -0.32
PTCD3-211ENST00000476215 G3V3G9 751 aa13.04□□□□□ -0.32
PTCD3-211ENST00000476215 RYDENQ9NUL5 291 aaKnown RBP12.98□□□□□ -0.33
PTCD3-211ENST00000476215 LCE2DQ5TA82 110 aaPredicted RBP12.97□□□□□ -0.33
PTCD3-211ENST00000476215 PPP1R37O75864 691 aa12.96□□□□□ -0.33
PTCD3-211ENST00000476215 TMEM92Q6UXU6 159 aa12.96□□□□□ -0.33
PTCD3-211ENST00000476215 DCAF8L2P0C7V8 631 aa12.94□□□□□ -0.34
PTCD3-211ENST00000476215 SNPHO15079 494 aa12.92□□□□□ -0.34
PTCD3-211ENST00000476215 GTPBP6O43824 516 aaPredicted RBP12.92□□□□□ -0.34
PTCD3-211ENST00000476215 KIF3CO14782 793 aa12.89□□□□□ -0.35
PTCD3-211ENST00000476215 BBXQ8WY36 941 aaPredicted RBP12.87□□□□□ -0.35
PTCD3-211ENST00000476215 HOXB3P14651 431 aaPredicted RBP12.85□□□□□ -0.35
PTCD3-211ENST00000476215 FAM163AQ96GL9 167 aaPredicted RBP12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms