RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 IRX6P78412 446 aaPredicted RBP7.18□□□□□ -1.26
NPHP3-206ENST00000474871 KCNG1Q9UIX4 513 aa7.16□□□□□ -1.26
NPHP3-206ENST00000474871 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.16□□□□□ -1.26
NPHP3-206ENST00000474871 DEKP35659 375 aaKnown RBP7.15□□□□□ -1.26
NPHP3-206ENST00000474871 MSH5O43196 834 aa7.15□□□□□ -1.27
NPHP3-206ENST00000474871 RNF216Q9NWF9 866 aaPredicted RBP7.15□□□□□ -1.27
NPHP3-206ENST00000474871 BCCIPQ9P287 314 aaKnown RBP eCLIP7.13□□□□□ -1.27
NPHP3-206ENST00000474871 RSF1Q96T23 1441 aaPredicted RBP7.12□□□□□ -1.27
NPHP3-206ENST00000474871 BRPF3Q9ULD4 1205 aa7.12□□□□□ -1.27
NPHP3-206ENST00000474871 TMED8Q6PL24 325 aaPredicted RBP7.11□□□□□ -1.27
NPHP3-206ENST00000474871 CECR2Q9BXF3 1484 aa7.1□□□□□ -1.27
NPHP3-206ENST00000474871 BICRAQ9NZM4 1560 aa7.09□□□□□ -1.27
NPHP3-206ENST00000474871 GTF2E1P29083 439 aaPredicted RBP7.09□□□□□ -1.27
NPHP3-206ENST00000474871 ZFP91Q96JP5 570 aaPredicted RBP7.09□□□□□ -1.27
NPHP3-206ENST00000474871 PRDM4Q9UKN5 801 aa7.08□□□□□ -1.28
NPHP3-206ENST00000474871 MROH2BQ7Z745 1585 aa7.08□□□□□ -1.28
NPHP3-206ENST00000474871 HSP90B1P14625 803 aaKnown RBP7.07□□□□□ -1.28
NPHP3-206ENST00000474871 NAP1L2Q9ULW6 460 aaPredicted RBP7.07□□□□□ -1.28
NPHP3-206ENST00000474871 KDM2AQ9Y2K7 1162 aa7.07□□□□□ -1.28
NPHP3-206ENST00000474871 ZEB1P37275 1124 aaPredicted RBP7.06□□□□□ -1.28
NPHP3-206ENST00000474871 BAZ1AQ9NRL2 1556 aaPredicted RBP7.06□□□□□ -1.28
NPHP3-206ENST00000474871 SECISBP2LQ93073 1101 aaKnown RBP7.06□□□□□ -1.28
NPHP3-206ENST00000474871 TEX2Q8IWB9 1127 aa7.05□□□□□ -1.28
NPHP3-206ENST00000474871 WIZO95785 1651 aa7.04□□□□□ -1.28
NPHP3-206ENST00000474871 SMARCA4P51532 1647 aa7.04□□□□□ -1.28
NPHP3-206ENST00000474871 IL27Q8NEV9 243 aa7.04□□□□□ -1.28
NPHP3-206ENST00000474871 CDK11AQ9UQ88 783 aaPredicted RBP7.03□□□□□ -1.28
NPHP3-206ENST00000474871 IPO4Q8TEX9 1081 aaKnown RBP7.03□□□□□ -1.28
NPHP3-206ENST00000474871 PUS7Q96PZ0 661 aaKnown RBP7.02□□□□□ -1.29
NPHP3-206ENST00000474871 CDK11BP21127 795 aaKnown RBP7.01□□□□□ -1.29
NPHP3-206ENST00000474871 CFAP44Q96MT7 982 aa7□□□□□ -1.29
NPHP3-206ENST00000474871 NAP1L5Q96NT1 182 aaPredicted RBP7□□□□□ -1.29
NPHP3-206ENST00000474871 ZNF692Q9BU19 519 aaPredicted RBP7□□□□□ -1.29
NPHP3-206ENST00000474871 CHMP4BQ9H444 224 aaKnown RBP7□□□□□ -1.29
NPHP3-206ENST00000474871 CLSPNQ9HAW4 1339 aa7□□□□□ -1.29
NPHP3-206ENST00000474871 STAC3Q96MF2 364 aa6.99□□□□□ -1.29
NPHP3-206ENST00000474871 PABPN1Q86U42 306 aaKnown RBP eCLIP6.97□□□□□ -1.29
NPHP3-206ENST00000474871 TICAM2Q86XR7 235 aa6.97□□□□□ -1.29
NPHP3-206ENST00000474871 TOP2AP11388 1531 aaKnown RBP6.97□□□□□ -1.29
NPHP3-206ENST00000474871 CNPY4Q8N129 248 aa6.96□□□□□ -1.29
NPHP3-206ENST00000474871 SLC4A2P04920 1241 aa6.96□□□□□ -1.3
NPHP3-206ENST00000474871 GRIPAP1Q4V328 841 aa6.96□□□□□ -1.3
NPHP3-206ENST00000474871 PEG3Q9GZU2 1588 aa6.96□□□□□ -1.3
NPHP3-206ENST00000474871 FAM43BQ6ZT52 329 aaPredicted RBP6.94□□□□□ -1.3
NPHP3-206ENST00000474871 VSIG10Q8N0Z9 540 aa6.93□□□□□ -1.3
NPHP3-206ENST00000474871 PRDM16Q9HAZ2 1276 aa6.93□□□□□ -1.3
NPHP3-206ENST00000474871 EIF4G1Q04637 1599 aaKnown RBP6.93□□□□□ -1.3
NPHP3-206ENST00000474871 ZNF326Q5BKZ1 582 aaKnown RBP6.92□□□□□ -1.3
NPHP3-206ENST00000474871 NECTIN2Q92692 538 aa6.92□□□□□ -1.3
NPHP3-206ENST00000474871 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.92□□□□□ -1.3
NPHP3-206ENST00000474871 PCGF6Q9BYE7 350 aa6.92□□□□□ -1.3
NPHP3-206ENST00000474871 PRDM10Q9NQV6 1147 aa6.92□□□□□ -1.3
NPHP3-206ENST00000474871 SMARCA2P51531 1590 aa6.91□□□□□ -1.3
NPHP3-206ENST00000474871 SUPT16HQ9Y5B9 1047 aaKnown RBP6.91□□□□□ -1.3
NPHP3-206ENST00000474871 FBLN2P98095 1184 aa6.91□□□□□ -1.3
NPHP3-206ENST00000474871 SLC52A1Q9NWF4 448 aa6.9□□□□□ -1.3
NPHP3-206ENST00000474871 FTSJ3Q8IY81 847 aaKnown RBP6.89□□□□□ -1.31
NPHP3-206ENST00000474871 MYT1LQ9UL68 1186 aa6.88□□□□□ -1.31
NPHP3-206ENST00000474871 ZNF592Q92610 1267 aa6.88□□□□□ -1.31
NPHP3-206ENST00000474871 MMP14P50281 582 aa6.88□□□□□ -1.31
NPHP3-206ENST00000474871 ZNF830Q96NB3 372 aaPredicted RBP6.88□□□□□ -1.31
NPHP3-206ENST00000474871 CCDC88BA6NC98 1476 aa6.88□□□□□ -1.31
NPHP3-206ENST00000474871 C11orf95C9JLR9 678 aaPredicted RBP6.88□□□□□ -1.31
NPHP3-206ENST00000474871 TRHP20396 242 aaPredicted RBP6.87□□□□□ -1.31
NPHP3-206ENST00000474871 ATAD2BQ9ULI0 1458 aa6.87□□□□□ -1.31
NPHP3-206ENST00000474871 BBXQ8WY36 941 aaPredicted RBP6.86□□□□□ -1.31
NPHP3-206ENST00000474871 FOXD4L1Q9NU39 408 aa6.85□□□□□ -1.31
NPHP3-206ENST00000474871 CERS3Q8IU89 383 aa6.84□□□□□ -1.31
NPHP3-206ENST00000474871 CCDC9Q9Y3X0 531 aaKnown RBP6.84□□□□□ -1.31
NPHP3-206ENST00000474871 BAZ1BQ9UIG0 1483 aaKnown RBP6.84□□□□□ -1.31
NPHP3-206ENST00000474871 DNAJC5BQ9UF47 199 aa6.83□□□□□ -1.32
NPHP3-206ENST00000474871 RBM19Q9Y4C8 960 aaKnown RBP6.83□□□□□ -1.32
NPHP3-206ENST00000474871 TMEM51Q9NW97 253 aa6.82□□□□□ -1.32
NPHP3-206ENST00000474871 RGS22Q8NE09 1264 aa6.82□□□□□ -1.32
NPHP3-206ENST00000474871 HMGXB3Q12766 1538 aa6.82□□□□□ -1.32
NPHP3-206ENST00000474871 FANCIQ9NVI1 1328 aa6.82□□□□□ -1.32
NPHP3-206ENST00000474871 PSEN1P49768 467 aa6.82□□□□□ -1.32
NPHP3-206ENST00000474871 VGFO15240 615 aaPredicted RBP6.8□□□□□ -1.32
NPHP3-206ENST00000474871 CC2D2BQ6DHV5 1058 aa6.79□□□□□ -1.32
NPHP3-206ENST00000474871 NCAPD3P42695 1498 aa6.79□□□□□ -1.32
NPHP3-206ENST00000474871 NCLP19338 710 aaKnown RBP6.79□□□□□ -1.32
NPHP3-206ENST00000474871 HOXD11P31277 338 aaPredicted RBP6.79□□□□□ -1.32
NPHP3-206ENST00000474871 ZNF428Q96B54 188 aa6.79□□□□□ -1.32
NPHP3-206ENST00000474871 POLR3GLQ9BT43 218 aa6.79□□□□□ -1.32
NPHP3-206ENST00000474871 WASHC2CQ9Y4E1 1318 aa6.79□□□□□ -1.32
NPHP3-206ENST00000474871 ATF5Q9Y2D1 282 aaPredicted RBP6.78□□□□□ -1.32
NPHP3-206ENST00000474871 DMRT2Q9Y5R5 561 aa6.78□□□□□ -1.32
NPHP3-206ENST00000474871 TRIM41Q8WV44 630 aa6.78□□□□□ -1.32
NPHP3-206ENST00000474871 C1orf115Q9H7X2 142 aa6.78□□□□□ -1.32
NPHP3-206ENST00000474871 ABCC8Q09428 1581 aa6.78□□□□□ -1.32
NPHP3-206ENST00000474871 CUX2O14529 1486 aa6.77□□□□□ -1.33
NPHP3-206ENST00000474871 WWC1Q8IX03 1113 aa6.77□□□□□ -1.33
NPHP3-206ENST00000474871 CC2D2AQ9P2K1 1620 aa6.76□□□□□ -1.33
NPHP3-206ENST00000474871 CENPJQ9HC77 1338 aaPredicted RBP6.76□□□□□ -1.33
NPHP3-206ENST00000474871 CLSTN1O94985 981 aa6.75□□□□□ -1.33
NPHP3-206ENST00000474871 CALD1Q05682 793 aaKnown RBP6.75□□□□□ -1.33
NPHP3-206ENST00000474871 NPM1P06748 294 aaKnown RBP eCLIP6.75□□□□□ -1.33
NPHP3-206ENST00000474871 WASHC2AQ641Q2 1341 aa6.74□□□□□ -1.33
NPHP3-206ENST00000474871 CADPSQ9ULU8 1353 aa6.74□□□□□ -1.33
NPHP3-206ENST00000474871 GLIPR1L2Q4G1C9 344 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms