RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 GALR2O43603 387 aaPredicted RBP10.56□□□□□ -0.72
SCN1A-205ENST00000473295 NUBP1P53384 320 aa10.56□□□□□ -0.72
SCN1A-205ENST00000473295 FAM212AQ96EL1 285 aa10.56□□□□□ -0.72
SCN1A-205ENST00000473295 KLHL34Q8N239 644 aa10.54□□□□□ -0.72
SCN1A-205ENST00000473295 POTEIP0CG38 1075 aa10.5□□□□□ -0.73
SCN1A-205ENST00000473295 KIF12Q96FN5 646 aa10.5□□□□□ -0.73
SCN1A-205ENST00000473295 MS4A3Q96HJ5 214 aa10.5□□□□□ -0.73
SCN1A-205ENST00000473295 SGIP1Q9BQI5 828 aa10.47□□□□□ -0.73
SCN1A-205ENST00000473295 DCAF8Q5TAQ9 597 aa10.45□□□□□ -0.74
SCN1A-205ENST00000473295 MAP3K13O43283 966 aa10.44□□□□□ -0.74
SCN1A-205ENST00000473295 GSE1Q14687 1217 aa10.43□□□□□ -0.74
SCN1A-205ENST00000473295 ASTLQ6HA08 431 aaPredicted RBP10.41□□□□□ -0.74
SCN1A-205ENST00000473295 PCDHB13Q9Y5F0 798 aa10.41□□□□□ -0.74
SCN1A-205ENST00000473295 SPOCK2Q92563 424 aa10.4□□□□□ -0.74
SCN1A-205ENST00000473295 TIE1P35590 1138 aa10.39□□□□□ -0.75
SCN1A-205ENST00000473295 LHX8Q68G74 356 aa10.39□□□□□ -0.75
SCN1A-205ENST00000473295 IFNLR1Q8IU57 520 aaPredicted RBP10.39□□□□□ -0.75
SCN1A-205ENST00000473295 ATMINO43313 823 aaPredicted RBP10.37□□□□□ -0.75
SCN1A-205ENST00000473295 SLC39A7Q92504 469 aa10.34□□□□□ -0.75
SCN1A-205ENST00000473295 PYGBP11216 843 aa10.33□□□□□ -0.76
SCN1A-205ENST00000473295 C7P10643 843 aa10.32□□□□□ -0.76
SCN1A-205ENST00000473295 BMP2KQ9NSY1 1161 aaPredicted RBP10.32□□□□□ -0.76
SCN1A-205ENST00000473295 IFNL1Q8IU54 200 aa10.31□□□□□ -0.76
SCN1A-205ENST00000473295 ATN1P54259 1190 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-205ENST00000473295 PELP1Q8IZL8 1130 aaKnown RBP10.3□□□□□ -0.76
SCN1A-205ENST00000473295 TRPC6Q9Y210 931 aa10.3□□□□□ -0.76
SCN1A-205ENST00000473295 CHRM1P11229 460 aaPredicted RBP10.29□□□□□ -0.76
SCN1A-205ENST00000473295 METRNQ9UJH8 293 aa10.29□□□□□ -0.76
SCN1A-205ENST00000473295 TTLL13PA6NNM8 815 aa10.28□□□□□ -0.76
SCN1A-205ENST00000473295 ZNF467Q7Z7K2 595 aaPredicted RBP10.28□□□□□ -0.76
SCN1A-205ENST00000473295 CIZ1Q9ULV3 898 aaPredicted RBP10.28□□□□□ -0.76
SCN1A-205ENST00000473295 TRIM41Q8WV44 630 aa10.26□□□□□ -0.77
SCN1A-205ENST00000473295 TMEM106CQ9BVX2 250 aa10.23□□□□□ -0.77
SCN1A-205ENST00000473295 TRIM35Q9UPQ4 493 aa10.23□□□□□ -0.77
SCN1A-205ENST00000473295 IER5LQ5T953 404 aa10.22□□□□□ -0.77
SCN1A-205ENST00000473295 PCDHB8Q9UN66 801 aa10.21□□□□□ -0.77
SCN1A-205ENST00000473295 SEC24BO95487 1268 aa10.18□□□□□ -0.78
SCN1A-205ENST00000473295 MAMSTRQ6ZN01 415 aa10.16□□□□□ -0.78
SCN1A-205ENST00000473295 POTEB2H3BUK9 544 aa10.15□□□□□ -0.78
SCN1A-205ENST00000473295 GOLGA2Q08379 1002 aa10.13□□□□□ -0.79
SCN1A-205ENST00000473295 PDAP1Q13442 181 aaKnown RBP10.13□□□□□ -0.79
SCN1A-205ENST00000473295 PSEN1P49768 467 aa10.12□□□□□ -0.79
SCN1A-205ENST00000473295 POTEFA5A3E0 1075 aa10.1□□□□□ -0.79
SCN1A-205ENST00000473295 PLCG2P16885 1265 aa10.1□□□□□ -0.79
SCN1A-205ENST00000473295 OTUD5Q96G74 571 aa10.1□□□□□ -0.79
SCN1A-205ENST00000473295 SCUBE2Q9NQ36 999 aa10.1□□□□□ -0.79
SCN1A-205ENST00000473295 MKRN3Q13064 507 aaKnown RBP10.08□□□□□ -0.8
SCN1A-205ENST00000473295 COLQQ9Y215 455 aaPredicted RBP10.08□□□□□ -0.8
SCN1A-205ENST00000473295 IRX5P78411 483 aaPredicted RBP10.06□□□□□ -0.8
SCN1A-205ENST00000473295 OCEL1Q9H607 264 aa10.06□□□□□ -0.8
SCN1A-205ENST00000473295 POTEJP0CG39 1038 aa10.04□□□□□ -0.8
SCN1A-205ENST00000473295 TAOK2Q9UL54 1235 aa10.04□□□□□ -0.8
SCN1A-205ENST00000473295 RIOK3O14730 519 aaKnown RBP10.02□□□□□ -0.81
SCN1A-205ENST00000473295 VGFO15240 615 aaPredicted RBP9.99□□□□□ -0.81
SCN1A-205ENST00000473295 CABP2Q9NPB3 220 aa9.99□□□□□ -0.81
SCN1A-205ENST00000473295 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.97□□□□□ -0.812e-6■■■□□ 15.3
SCN1A-205ENST00000473295 ECM2O94769 699 aaPredicted RBP9.96□□□□□ -0.82
SCN1A-205ENST00000473295 RNF25Q96BH1 459 aaPredicted RBP9.96□□□□□ -0.82
SCN1A-205ENST00000473295 L3MBTL3Q96JM7 780 aaPredicted RBP9.95□□□□□ -0.82
SCN1A-205ENST00000473295 PDCD7Q8N8D1 485 aaKnown RBP9.94□□□□□ -0.82
SCN1A-205ENST00000473295 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.92□□□□□ -0.82
SCN1A-205ENST00000473295 ILDR1Q86SU0 546 aaPredicted RBP9.92□□□□□ -0.82
SCN1A-205ENST00000473295 ZFP91Q96JP5 570 aaPredicted RBP9.92□□□□□ -0.82
SCN1A-205ENST00000473295 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.91□□□□□ -0.82
SCN1A-205ENST00000473295 PKD2Q13563 968 aa9.9□□□□□ -0.82
SCN1A-205ENST00000473295 G3V3G9 751 aa9.89□□□□□ -0.83
SCN1A-205ENST00000473295 SLAIN1Q8ND83 568 aa9.89□□□□□ -0.83
SCN1A-205ENST00000473295 SOX12O15370 315 aa9.88□□□□□ -0.83
SCN1A-205ENST00000473295 C3orf67Q6ZVT6 689 aa9.88□□□□□ -0.83
SCN1A-205ENST00000473295 EFCAB3Q8N7B9 438 aa9.88□□□□□ -0.83
SCN1A-205ENST00000473295 BCL11BQ9C0K0 894 aaPredicted RBP9.84□□□□□ -0.83
SCN1A-205ENST00000473295 STK24Q9Y6E0 443 aa9.83□□□□□ -0.84
SCN1A-205ENST00000473295 STK25O00506 426 aa9.82□□□□□ -0.84
SCN1A-205ENST00000473295 RGL2O15211 777 aa9.82□□□□□ -0.84
SCN1A-205ENST00000473295 BOLA1Q9Y3E2 137 aa9.82□□□□□ -0.84
SCN1A-205ENST00000473295 SNPHO15079 494 aa9.81□□□□□ -0.84
SCN1A-205ENST00000473295 FAM163AQ96GL9 167 aaPredicted RBP9.8□□□□□ -0.84
SCN1A-205ENST00000473295 DPY19L2Q6NUT2 758 aa9.79□□□□□ -0.84
SCN1A-205ENST00000473295 NLRP6P59044 892 aa9.78□□□□□ -0.84
SCN1A-205ENST00000473295 POTEMA6NI47 508 aa9.76□□□□□ -0.85
SCN1A-205ENST00000473295 PHF8Q9UPP1 1060 aa9.76□□□□□ -0.85
SCN1A-205ENST00000473295 POTEGQ6S5H5 508 aa9.74□□□□□ -0.85
SCN1A-205ENST00000473295 TMEM121BQ9BXQ6 578 aaPredicted RBP9.74□□□□□ -0.85
SCN1A-205ENST00000473295 MICALL2Q8IY33 904 aa9.71□□□□□ -0.86
SCN1A-205ENST00000473295 MS4A4AQ96JQ5 239 aa9.71□□□□□ -0.86
SCN1A-205ENST00000473295 LCE2DQ5TA82 110 aaPredicted RBP9.7□□□□□ -0.86
SCN1A-205ENST00000473295 FBXO22Q8NEZ5 403 aa9.7□□□□□ -0.86
SCN1A-205ENST00000473295 PCDH10Q9P2E7 1040 aa9.7□□□□□ -0.86
SCN1A-205ENST00000473295 MFRPQ9BY79 579 aa9.69□□□□□ -0.86
SCN1A-205ENST00000473295 ST18O60284 1047 aa9.68□□□□□ -0.86
SCN1A-205ENST00000473295 HS6ST3Q8IZP7 471 aa9.68□□□□□ -0.86
SCN1A-205ENST00000473295 CHGAP10645 457 aaKnown RBP9.63□□□□□ -0.87
SCN1A-205ENST00000473295 DOK7Q18PE1 504 aa9.61□□□□□ -0.87
SCN1A-205ENST00000473295 RIMBP2O15034 1052 aa9.6□□□□□ -0.87
SCN1A-205ENST00000473295 DNAJC5Q9H3Z4 198 aa9.6□□□□□ -0.87
SCN1A-205ENST00000473295 RYDENQ9NUL5 291 aaKnown RBP9.6□□□□□ -0.87
SCN1A-205ENST00000473295 ZNF710Q8N1W2 664 aa9.58□□□□□ -0.88
SCN1A-205ENST00000473295 TMEM92Q6UXU6 159 aa9.56□□□□□ -0.88
SCN1A-205ENST00000473295 HOXB3P14651 431 aaPredicted RBP9.55□□□□□ -0.88
SCN1A-205ENST00000473295 EMP3P54852 163 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms