RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 ATMINO43313 823 aaPredicted RBP12.05□□□□□ -0.48
RTF1-203ENST00000473214 METRNQ9UJH8 293 aa12.04□□□□□ -0.48
RTF1-203ENST00000473214 SLC39A7Q92504 469 aa12.02□□□□□ -0.49
RTF1-203ENST00000473214 POTEMA6NI47 508 aa12.01□□□□□ -0.49
RTF1-203ENST00000473214 C7P10643 843 aa12.01□□□□□ -0.49
RTF1-203ENST00000473214 TSPYL2Q9H2G4 693 aaPredicted RBP12.01□□□□□ -0.49
RTF1-203ENST00000473214 POTEJP0CG39 1038 aa12□□□□□ -0.49
RTF1-203ENST00000473214 CCDC61Q9Y6R9 512 aa11.98□□□□□ -0.49
RTF1-203ENST00000473214 POTEGQ6S5H5 508 aa11.97□□□□□ -0.49
RTF1-203ENST00000473214 RTN4Q9NQC3 1192 aaKnown RBP11.96□□□□□ -0.49
RTF1-203ENST00000473214 ATN1P54259 1190 aaPredicted RBP11.94□□□□□ -0.5
RTF1-203ENST00000473214 KIF12Q96FN5 646 aa11.93□□□□□ -0.5
RTF1-203ENST00000473214 MAMSTRQ6ZN01 415 aa11.92□□□□□ -0.5
RTF1-203ENST00000473214 AMER1Q5JTC6 1135 aaPredicted RBP11.88□□□□□ -0.51
RTF1-203ENST00000473214 MIER1Q8N108 512 aa11.86□□□□□ -0.51
RTF1-203ENST00000473214 BMP2KQ9NSY1 1161 aaPredicted RBP11.86□□□□□ -0.51
RTF1-203ENST00000473214 TRPC6Q9Y210 931 aa11.86□□□□□ -0.51
RTF1-203ENST00000473214 POTEFA5A3E0 1075 aa11.84□□□□□ -0.51
RTF1-203ENST00000473214 MAP3K13O43283 966 aa11.84□□□□□ -0.51
RTF1-203ENST00000473214 PLEKHG5O94827 1062 aa11.84□□□□□ -0.51
RTF1-203ENST00000473214 PCDH10Q9P2E7 1040 aa11.83□□□□□ -0.52
RTF1-203ENST00000473214 LCE2DQ5TA82 110 aaPredicted RBP11.82□□□□□ -0.52
RTF1-203ENST00000473214 RASEFQ8IZ41 740 aa11.82□□□□□ -0.52
RTF1-203ENST00000473214 SCUBE2Q9NQ36 999 aa11.82□□□□□ -0.52
RTF1-203ENST00000473214 TIE1P35590 1138 aa11.8□□□□□ -0.52
RTF1-203ENST00000473214 FAM163AQ96GL9 167 aaPredicted RBP11.79□□□□□ -0.52
RTF1-203ENST00000473214 TTLL13PA6NNM8 815 aa11.74□□□□□ -0.53
RTF1-203ENST00000473214 PLCD3Q8N3E9 789 aa11.73□□□□□ -0.53
RTF1-203ENST00000473214 COLQQ9Y215 455 aaPredicted RBP11.73□□□□□ -0.53
RTF1-203ENST00000473214 SEC24BO95487 1268 aa11.7□□□□□ -0.54
RTF1-203ENST00000473214 FKBP8Q14318 412 aa11.68□□□□□ -0.54
RTF1-203ENST00000473214 SGIP1Q9BQI5 828 aa11.68□□□□□ -0.54
RTF1-203ENST00000473214 ZBTB47Q9UFB7 747 aaPredicted RBP11.68□□□□□ -0.54
RTF1-203ENST00000473214 NUBP1P53384 320 aa11.67□□□□□ -0.54
RTF1-203ENST00000473214 PCDHB13Q9Y5F0 798 aa11.67□□□□□ -0.54
RTF1-203ENST00000473214 TRIM35Q9UPQ4 493 aa11.66□□□□□ -0.54
RTF1-203ENST00000473214 IER5LQ5T953 404 aa11.65□□□□□ -0.54
RTF1-203ENST00000473214 IFNL1Q8IU54 200 aa11.6□□□□□ -0.55
RTF1-203ENST00000473214 FAM212AQ96EL1 285 aa11.56□□□□□ -0.56
RTF1-203ENST00000473214 TMEM106CQ9BVX2 250 aa11.55□□□□□ -0.56
RTF1-203ENST00000473214 DAXXQ9UER7 740 aaPredicted RBP11.54□□□□□ -0.56
RTF1-203ENST00000473214 CDAN1Q8IWY9 1227 aa11.53□□□□□ -0.56
RTF1-203ENST00000473214 SLAIN1Q8ND83 568 aa11.53□□□□□ -0.56
RTF1-203ENST00000473214 ST18O60284 1047 aa11.49□□□□□ -0.57
RTF1-203ENST00000473214 PLCG2P16885 1265 aa11.49□□□□□ -0.57
RTF1-203ENST00000473214 FBXO3Q9UK99 471 aa11.49□□□□□ -0.57
RTF1-203ENST00000473214 IRX5P78411 483 aaPredicted RBP11.48□□□□□ -0.57
RTF1-203ENST00000473214 DCAF8Q5TAQ9 597 aa11.43□□□□□ -0.58
RTF1-203ENST00000473214 OCEL1Q9H607 264 aa11.42□□□□□ -0.58
RTF1-203ENST00000473214 PYGBP11216 843 aa11.41□□□□□ -0.58
RTF1-203ENST00000473214 PCDHB8Q9UN66 801 aa11.38□□□□□ -0.59
RTF1-203ENST00000473214 VASPP50552 380 aaPredicted RBP11.36□□□□□ -0.59
RTF1-203ENST00000473214 TMEM121BQ9BXQ6 578 aaPredicted RBP11.33□□□□□ -0.6
RTF1-203ENST00000473214 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.33□□□□□ -0.6
RTF1-203ENST00000473214 SNPHO15079 494 aa11.32□□□□□ -0.6
RTF1-203ENST00000473214 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
RTF1-203ENST00000473214 GSE1Q14687 1217 aa11.3□□□□□ -0.6
RTF1-203ENST00000473214 CHRM1P11229 460 aaPredicted RBP11.27□□□□□ -0.61
RTF1-203ENST00000473214 PDCD7Q8N8D1 485 aaKnown RBP11.27□□□□□ -0.61
RTF1-203ENST00000473214 SPNS2Q8IVW8 549 aa11.26□□□□□ -0.61
RTF1-203ENST00000473214 MARVELD3Q96A59 401 aa11.26□□□□□ -0.61
RTF1-203ENST00000473214 PRKCSHP14314 528 aaPredicted RBP11.25□□□□□ -0.61
RTF1-203ENST00000473214 MMRN1Q13201 1228 aa11.25□□□□□ -0.61
RTF1-203ENST00000473214 ZNF467Q7Z7K2 595 aaPredicted RBP11.25□□□□□ -0.61
RTF1-203ENST00000473214 MKRN3Q13064 507 aaKnown RBP11.21□□□□□ -0.61
RTF1-203ENST00000473214 GOLGA2Q08379 1002 aa11.2□□□□□ -0.62
RTF1-203ENST00000473214 L3MBTL3Q96JM7 780 aaPredicted RBP11.2□□□□□ -0.62
RTF1-203ENST00000473214 C3orf67Q6ZVT6 689 aa11.19□□□□□ -0.62
RTF1-203ENST00000473214 IFNLR1Q8IU57 520 aaPredicted RBP11.17□□□□□ -0.62
RTF1-203ENST00000473214 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.17□□□□□ -0.62
RTF1-203ENST00000473214 PSEN1P49768 467 aa11.16□□□□□ -0.62
RTF1-203ENST00000473214 EMP3P54852 163 aa11.14□□□□□ -0.63
RTF1-203ENST00000473214 SPOCK2Q92563 424 aa11.14□□□□□ -0.63
RTF1-203ENST00000473214 ILDR1Q86SU0 546 aaPredicted RBP11.12□□□□□ -0.63
RTF1-203ENST00000473214 POTEB3A0JP26 581 aa11.11□□□□□ -0.63
RTF1-203ENST00000473214 POTEBQ6S5H4 581 aa11.11□□□□□ -0.63
RTF1-203ENST00000473214 PDAP1Q13442 181 aaKnown RBP11.1□□□□□ -0.63
RTF1-203ENST00000473214 DPY19L2Q6NUT2 758 aa11.09□□□□□ -0.63
RTF1-203ENST00000473214 ARXQ96QS3 562 aa11.09□□□□□ -0.63
RTF1-203ENST00000473214 HS3ST6Q96QI5 342 aa11.08□□□□□ -0.64
RTF1-203ENST00000473214 CIZ1Q9ULV3 898 aaPredicted RBP11.08□□□□□ -0.64
RTF1-203ENST00000473214 FAM205CA6NFA0 338 aa11.07□□□□□ -0.64
RTF1-203ENST00000473214 KRTAP3-3Q9BYR6 98 aa11.07□□□□□ -0.64
RTF1-203ENST00000473214 KRTAP3-2Q9BYR7 98 aa11.07□□□□□ -0.64
RTF1-203ENST00000473214 BCANQ96GW7 911 aa11.04□□□□□ -0.64
RTF1-203ENST00000473214 TAOK2Q9UL54 1235 aa11.04□□□□□ -0.64
RTF1-203ENST00000473214 CABP2Q9NPB3 220 aa11.02□□□□□ -0.65
RTF1-203ENST00000473214 BOLA1Q9Y3E2 137 aa11□□□□□ -0.65
RTF1-203ENST00000473214 HOXB3P14651 431 aaPredicted RBP10.99□□□□□ -0.65
RTF1-203ENST00000473214 G3V3G9 751 aa10.97□□□□□ -0.65
RTF1-203ENST00000473214 TRIM41Q8WV44 630 aa10.95□□□□□ -0.66
RTF1-203ENST00000473214 TIMELESSQ9UNS1 1208 aa10.94□□□□□ -0.66
RTF1-203ENST00000473214 HOXB1P14653 301 aaPredicted RBP10.93□□□□□ -0.66
RTF1-203ENST00000473214 ZNF710Q8N1W2 664 aa10.91□□□□□ -0.66
RTF1-203ENST00000473214 DOK7Q18PE1 504 aa10.89□□□□□ -0.67
RTF1-203ENST00000473214 PLCB2Q00722 1185 aa10.88□□□□□ -0.67
RTF1-203ENST00000473214 ERBB3P21860 1342 aa10.87□□□□□ -0.67
RTF1-203ENST00000473214 TPRNQ4KMQ1 711 aa10.87□□□□□ -0.67
RTF1-203ENST00000473214 EFCAB3Q8N7B9 438 aa10.87□□□□□ -0.67
RTF1-203ENST00000473214 TULP1O00294 542 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms