RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 ZNF777Q9ULD5 760 aaPredicted RBP14.87□□□□□ -0.03
CHD3-208ENST00000470531 CEP164Q9UPV0 1460 aa14.86□□□□□ -0.03
CHD3-208ENST00000470531 RBM19Q9Y4C8 960 aaKnown RBP14.86□□□□□ -0.03
CHD3-208ENST00000470531 FBLN2P98095 1184 aa14.83□□□□□ -0.03
CHD3-208ENST00000470531 FOXD1Q16676 465 aa14.83□□□□□ -0.03
CHD3-208ENST00000470531 B4GALNT3Q6L9W6 998 aa14.79□□□□□ -0.04
CHD3-208ENST00000470531 MRS2Q9HD23 443 aa14.79□□□□□ -0.04
CHD3-208ENST00000470531 SMARCA4P51532 1647 aa14.78□□□□□ -0.04
CHD3-208ENST00000470531 CCNB3Q8WWL7 1395 aa14.76□□□□□ -0.05
CHD3-208ENST00000470531 KIF21BO75037 1637 aa14.75□□□□□ -0.05
CHD3-208ENST00000470531 SYNJ1O43426 1573 aa14.75□□□□□ -0.05
CHD3-208ENST00000470531 RAB3GAP2Q9H2M9 1393 aa14.75□□□□□ -0.05
CHD3-208ENST00000470531 KDM2AQ9Y2K7 1162 aa14.75□□□□□ -0.05
CHD3-208ENST00000470531 BAZ1BQ9UIG0 1483 aaKnown RBP14.72□□□□□ -0.05
CHD3-208ENST00000470531 MYT1LQ9UL68 1186 aa14.71□□□□□ -0.05
CHD3-208ENST00000470531 EIF5BO60841 1220 aaKnown RBP14.71□□□□□ -0.05
CHD3-208ENST00000470531 MSH5O43196 834 aa14.7□□□□□ -0.06
CHD3-208ENST00000470531 RTL5Q5HYW3 569 aaPredicted RBP14.69□□□□□ -0.06
CHD3-208ENST00000470531 SLC4A1APQ9BWU0 796 aaKnown RBP14.69□□□□□ -0.06
CHD3-208ENST00000470531 ANO8Q9HCE9 1232 aaPredicted RBP14.69□□□□□ -0.06
CHD3-208ENST00000470531 MTUS2Q5JR59 1369 aa14.68□□□□□ -0.06
CHD3-208ENST00000470531 SENP3Q9H4L4 574 aaPredicted RBP14.66□□□□□ -0.06
CHD3-208ENST00000470531 CCDC136Q96JN2 1154 aa14.65□□□□□ -0.06
CHD3-208ENST00000470531 RTN4Q9NQC3 1192 aaKnown RBP14.63□□□□□ -0.07
CHD3-208ENST00000470531 DAXXQ9UER7 740 aaPredicted RBP14.62□□□□□ -0.07
CHD3-208ENST00000470531 EIF4G2P78344 907 aaKnown RBP eCLIP14.61□□□□□ -0.07
CHD3-208ENST00000470531 ARAP1Q96P48 1450 aa14.6□□□□□ -0.07
CHD3-208ENST00000470531 KIF27Q86VH2 1401 aa14.6□□□□□ -0.07
CHD3-208ENST00000470531 HSPA5P11021 654 aaKnown RBP14.58□□□□□ -0.08
CHD3-208ENST00000470531 WDR97A6NE52 1622 aa14.58□□□□□ -0.08
CHD3-208ENST00000470531 PPP1R15AO75807 674 aaPredicted RBP14.58□□□□□ -0.08
CHD3-208ENST00000470531 TMC1Q8TDI8 760 aa14.58□□□□□ -0.08
CHD3-208ENST00000470531 CUX2O14529 1486 aa14.57□□□□□ -0.08
CHD3-208ENST00000470531 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.56□□□□□ -0.08
CHD3-208ENST00000470531 RGL3Q3MIN7 710 aa14.56□□□□□ -0.08
CHD3-208ENST00000470531 ARXQ96QS3 562 aa14.55□□□□□ -0.08
CHD3-208ENST00000470531 SETD5Q9C0A6 1442 aa14.55□□□□□ -0.08
CHD3-208ENST00000470531 ANP32AP39687 249 aaKnown RBP14.54□□□□□ -0.08
CHD3-208ENST00000470531 CARMIL1Q5VZK9 1371 aa14.53□□□□□ -0.08
CHD3-208ENST00000470531 LAS1LQ9Y4W2 734 aaKnown RBP14.53□□□□□ -0.08
CHD3-208ENST00000470531 RRBP1Q9P2E9 1410 aaKnown RBP14.53□□□□□ -0.08
CHD3-208ENST00000470531 CCDC184Q52MB2 194 aa14.51□□□□□ -0.09
CHD3-208ENST00000470531 MAPKBP1O60336 1514 aa14.5□□□□□ -0.09
CHD3-208ENST00000470531 FHOD3Q2V2M9 1422 aa14.49□□□□□ -0.09
CHD3-208ENST00000470531 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.49□□□□□ -0.09
CHD3-208ENST00000470531 ZBTB47Q9UFB7 747 aaPredicted RBP14.47□□□□□ -0.09
CHD3-208ENST00000470531 CCER2I3L3R5 266 aa14.46□□□□□ -0.09
CHD3-208ENST00000470531 L3MBTL2Q969R5 705 aa14.46□□□□□ -0.09
CHD3-208ENST00000470531 DEKP35659 375 aaKnown RBP14.45□□□□□ -0.1
CHD3-208ENST00000470531 PHLDB1Q86UU1 1377 aa14.45□□□□□ -0.1
CHD3-208ENST00000470531 TDRD9Q8NDG6 1382 aaKnown RBP14.44□□□□□ -0.1
CHD3-208ENST00000470531 PPP4R2Q9NY27 417 aa14.43□□□□□ -0.1
CHD3-208ENST00000470531 ARHGAP35Q9NRY4 1499 aa14.42□□□□□ -0.1
CHD3-208ENST00000470531 UNC13AQ9UPW8 1703 aa14.41□□□□□ -0.1
CHD3-208ENST00000470531 PRXQ9BXM0 1461 aa14.41□□□□□ -0.1
CHD3-208ENST00000470531 ATAD2BQ9ULI0 1458 aa14.41□□□□□ -0.1
CHD3-208ENST00000470531 CC2D1BQ5T0F9 858 aaKnown RBP14.39□□□□□ -0.11
CHD3-208ENST00000470531 FANCIQ9NVI1 1328 aa14.38□□□□□ -0.11
CHD3-208ENST00000470531 MPHOSPH9Q99550 1183 aa14.37□□□□□ -0.11
CHD3-208ENST00000470531 CARD11Q9BXL7 1154 aa14.36□□□□□ -0.11
CHD3-208ENST00000470531 PAK3O75914 559 aaPredicted RBP14.35□□□□□ -0.11
CHD3-208ENST00000470531 NOP58Q9Y2X3 529 aaKnown RBP14.35□□□□□ -0.11
CHD3-208ENST00000470531 PLEKHG5O94827 1062 aa14.35□□□□□ -0.11
CHD3-208ENST00000470531 TOP2BQ02880 1626 aa14.34□□□□□ -0.11
CHD3-208ENST00000470531 CANXP27824 592 aaKnown RBP14.32□□□□□ -0.12
CHD3-208ENST00000470531 DCAF11Q8TEB1 546 aa14.32□□□□□ -0.12
CHD3-208ENST00000470531 PLIN1O60240 522 aa14.32□□□□□ -0.12
CHD3-208ENST00000470531 CFDP1Q9UEE9 299 aaPredicted RBP14.32□□□□□ -0.12
CHD3-208ENST00000470531 ZNF644Q9H582 1327 aaPredicted RBP14.32□□□□□ -0.12
CHD3-208ENST00000470531 RGS3P49796 1198 aa14.31□□□□□ -0.12
CHD3-208ENST00000470531 WASHC2AQ641Q2 1341 aa14.31□□□□□ -0.12
CHD3-208ENST00000470531 ERICH3Q5RHP9 1530 aa14.31□□□□□ -0.12
CHD3-208ENST00000470531 IGF1RP08069 1367 aa14.31□□□□□ -0.12
CHD3-208ENST00000470531 PODXL2Q9NZ53 605 aa14.31□□□□□ -0.12
CHD3-208ENST00000470531 CHGAP10645 457 aaKnown RBP14.3□□□□□ -0.12
CHD3-208ENST00000470531 NEUROD2Q15784 382 aa14.3□□□□□ -0.12
CHD3-208ENST00000470531 SLC4A3P48751 1232 aa14.3□□□□□ -0.12
CHD3-208ENST00000470531 SKAP1Q86WV1 359 aa14.29□□□□□ -0.12
CHD3-208ENST00000470531 PRKRIP1Q9H875 184 aaPredicted RBP14.29□□□□□ -0.12
CHD3-208ENST00000470531 NEFMP07197 916 aa14.28□□□□□ -0.12
CHD3-208ENST00000470531 C11orf95C9JLR9 678 aaPredicted RBP14.28□□□□□ -0.12
CHD3-208ENST00000470531 TNNT2P45379 298 aaPredicted RBP14.28□□□□□ -0.12
CHD3-208ENST00000470531 PKD2Q13563 968 aa14.28□□□□□ -0.12
CHD3-208ENST00000470531 LRRC9Q6ZRR7 1453 aa14.28□□□□□ -0.12
CHD3-208ENST00000470531 PKNOX2Q96KN3 472 aa14.27□□□□□ -0.13
CHD3-208ENST00000470531 CUX1P39880 1505 aa14.26□□□□□ -0.13
CHD3-208ENST00000470531 BICRAQ9NZM4 1560 aa14.26□□□□□ -0.13
CHD3-208ENST00000470531 FHAD1B1AJZ9 1412 aa14.25□□□□□ -0.13
CHD3-208ENST00000470531 TSPY4P0CV99 314 aa14.25□□□□□ -0.13
CHD3-208ENST00000470531 TSPY10P0CW01 314 aa14.25□□□□□ -0.13
CHD3-208ENST00000470531 TIAM1Q13009 1591 aa14.25□□□□□ -0.13
CHD3-208ENST00000470531 RAD54L2Q9Y4B4 1467 aa14.24□□□□□ -0.13
CHD3-208ENST00000470531 TIMELESSQ9UNS1 1208 aa14.24□□□□□ -0.13
CHD3-208ENST00000470531 CHMP7Q8WUX9 453 aaPredicted RBP14.23□□□□□ -0.13
CHD3-208ENST00000470531 NBPF8Q3BBV2 869 aa14.2□□□□□ -0.14
CHD3-208ENST00000470531 EXOC6Q8TAG9 804 aa14.2□□□□□ -0.14
CHD3-208ENST00000470531 UBE2Q2Q8WVN8 375 aa14.2□□□□□ -0.14
CHD3-208ENST00000470531 ST20-MTHFSA0A0A6YYL1 179 aa14.19□□□□□ -0.14
CHD3-208ENST00000470531 DNAJC5BQ9UF47 199 aa14.19□□□□□ -0.14
CHD3-208ENST00000470531 CCDC18Q5T9S5 1454 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms