RNA–Protein interactions for RNA: ENST00000470258.5

NHLRC3-203, Transcript of NHL repeat containing 3, humanhuman

TSL 1 (best) BASIC

Gene NHLRC3, Length 3,298 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-203ENST00000470258 NESP48681 1621 aa13.35□□□□□ -0.27
NHLRC3-203ENST00000470258 KIF21AQ7Z4S6 1674 aa13.32□□□□□ -0.28
NHLRC3-203ENST00000470258 MYT1LQ9UL68 1186 aa13.32□□□□□ -0.28
NHLRC3-203ENST00000470258 HNRNPUQ00839 825 aaKnown RBP eCLIP13.31□□□□□ -0.28
NHLRC3-203ENST00000470258 SIN3AQ96ST3 1273 aa13.31□□□□□ -0.28
NHLRC3-203ENST00000470258 CFTRP13569 1480 aa13.3□□□□□ -0.28
NHLRC3-203ENST00000470258 CADPSQ9ULU8 1353 aa13.29□□□□□ -0.28
NHLRC3-203ENST00000470258 RAPGEF2Q9Y4G8 1499 aa13.28□□□□□ -0.28
NHLRC3-203ENST00000470258 PPP1R15AO75807 674 aaPredicted RBP13.27□□□□□ -0.29
NHLRC3-203ENST00000470258 KIF21BO75037 1637 aa13.26□□□□□ -0.29
NHLRC3-203ENST00000470258 CCER2I3L3R5 266 aa13.26□□□□□ -0.29
NHLRC3-203ENST00000470258 CCDC136Q96JN2 1154 aa13.26□□□□□ -0.29
NHLRC3-203ENST00000470258 THOC2Q8NI27 1593 aaKnown RBP13.26□□□□□ -0.29
NHLRC3-203ENST00000470258 SALL2Q9Y467 1007 aaPredicted RBP13.25□□□□□ -0.29
NHLRC3-203ENST00000470258 RTN4Q9NQC3 1192 aaKnown RBP13.25□□□□□ -0.29
NHLRC3-203ENST00000470258 NOP58Q9Y2X3 529 aaKnown RBP13.23□□□□□ -0.29
NHLRC3-203ENST00000470258 RAB3GAP2Q9H2M9 1393 aa13.23□□□□□ -0.29
NHLRC3-203ENST00000470258 B4GALNT3Q6L9W6 998 aa13.23□□□□□ -0.29
NHLRC3-203ENST00000470258 RTL5Q5HYW3 569 aaPredicted RBP13.21□□□□□ -0.29
NHLRC3-203ENST00000470258 CCNB3Q8WWL7 1395 aa13.21□□□□□ -0.29
NHLRC3-203ENST00000470258 WDR97A6NE52 1622 aa13.21□□□□□ -0.29
NHLRC3-203ENST00000470258 PDS5BQ9NTI5 1447 aa13.21□□□□□ -0.29
NHLRC3-203ENST00000470258 PAK3O75914 559 aaPredicted RBP13.21□□□□□ -0.3
NHLRC3-203ENST00000470258 ERCC6Q03468 1493 aa13.2□□□□□ -0.3
NHLRC3-203ENST00000470258 PPP4R2Q9NY27 417 aa13.18□□□□□ -0.3
NHLRC3-203ENST00000470258 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.17□□□□□ -0.3
NHLRC3-203ENST00000470258 FANCD2Q9BXW9 1451 aa13.17□□□□□ -0.3
NHLRC3-203ENST00000470258 FAM50AQ14320 339 aaKnown RBP13.16□□□□□ -0.3
NHLRC3-203ENST00000470258 IL27Q8NEV9 243 aa13.15□□□□□ -0.3
NHLRC3-203ENST00000470258 RRBP1Q9P2E9 1410 aaKnown RBP13.15□□□□□ -0.3
NHLRC3-203ENST00000470258 WDR62O43379 1518 aa13.14□□□□□ -0.31
NHLRC3-203ENST00000470258 MAPKBP1O60336 1514 aa13.14□□□□□ -0.31
NHLRC3-203ENST00000470258 SYNJ1O43426 1573 aa13.13□□□□□ -0.31
NHLRC3-203ENST00000470258 MRC2Q9UBG0 1479 aa13.12□□□□□ -0.31
NHLRC3-203ENST00000470258 CUX2O14529 1486 aa13.12□□□□□ -0.31
NHLRC3-203ENST00000470258 ARAP1Q96P48 1450 aa13.1□□□□□ -0.31
NHLRC3-203ENST00000470258 ANP32AP39687 249 aaKnown RBP13.1□□□□□ -0.31
NHLRC3-203ENST00000470258 FAM9BQ8IZU0 186 aa13.09□□□□□ -0.31
NHLRC3-203ENST00000470258 ERICH6BQ5W0A0 696 aa13.08□□□□□ -0.31
NHLRC3-203ENST00000470258 SETD5Q9C0A6 1442 aa13.08□□□□□ -0.32
NHLRC3-203ENST00000470258 ZBTB47Q9UFB7 747 aaPredicted RBP13.08□□□□□ -0.32
NHLRC3-203ENST00000470258 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
NHLRC3-203ENST00000470258 ATP1B4Q9UN42 357 aaPredicted RBP13.07□□□□□ -0.32
NHLRC3-203ENST00000470258 TONSLQ96HA7 1378 aa13.05□□□□□ -0.32
NHLRC3-203ENST00000470258 NPM2Q86SE8 214 aaKnown RBP13.05□□□□□ -0.32
NHLRC3-203ENST00000470258 DNMBPQ6XZF7 1577 aa13.04□□□□□ -0.32
NHLRC3-203ENST00000470258 CNGB1Q14028 1251 aaPredicted RBP13.03□□□□□ -0.32
NHLRC3-203ENST00000470258 IPO9Q96P70 1041 aaKnown RBP13.02□□□□□ -0.32
NHLRC3-203ENST00000470258 CCDC184Q52MB2 194 aa13.01□□□□□ -0.33
NHLRC3-203ENST00000470258 EIF5BO60841 1220 aaKnown RBP13.01□□□□□ -0.33
NHLRC3-203ENST00000470258 LAS1LQ9Y4W2 734 aaKnown RBP13.01□□□□□ -0.33
NHLRC3-203ENST00000470258 TOPBP1Q92547 1522 aa13□□□□□ -0.33
NHLRC3-203ENST00000470258 SENP3-EIF4A1A0A087X0R7 540 aa13□□□□□ -0.33
NHLRC3-203ENST00000470258 TIMELESSQ9UNS1 1208 aa13□□□□□ -0.33
NHLRC3-203ENST00000470258 MRS2Q9HD23 443 aa12.98□□□□□ -0.33
NHLRC3-203ENST00000470258 BIVM-ERCC5R4GMW8 1640 aa12.97□□□□□ -0.33
NHLRC3-203ENST00000470258 CUX1P39880 1505 aa12.96□□□□□ -0.33
NHLRC3-203ENST00000470258 NEFMP07197 916 aa12.96□□□□□ -0.33
NHLRC3-203ENST00000470258 PHLDB1Q86UU1 1377 aa12.93□□□□□ -0.34
NHLRC3-203ENST00000470258 TARBP1Q13395 1621 aaKnown RBP12.93□□□□□ -0.34
NHLRC3-203ENST00000470258 P3H3Q8IVL6 736 aa12.92□□□□□ -0.34
NHLRC3-203ENST00000470258 TOP2BQ02880 1626 aa12.92□□□□□ -0.34
NHLRC3-203ENST00000470258 WASHC2AQ641Q2 1341 aa12.91□□□□□ -0.34
NHLRC3-203ENST00000470258 HSPA5P11021 654 aaKnown RBP12.91□□□□□ -0.34
NHLRC3-203ENST00000470258 PRXQ9BXM0 1461 aa12.91□□□□□ -0.34
NHLRC3-203ENST00000470258 ARHGAP35Q9NRY4 1499 aa12.9□□□□□ -0.34
NHLRC3-203ENST00000470258 UBE2Q2Q8WVN8 375 aa12.89□□□□□ -0.35
NHLRC3-203ENST00000470258 BRPF3Q9ULD4 1205 aa12.89□□□□□ -0.35
NHLRC3-203ENST00000470258 POLA1P09884 1462 aaPredicted RBP12.89□□□□□ -0.35
NHLRC3-203ENST00000470258 AKNAQ7Z591 1439 aa12.89□□□□□ -0.35
NHLRC3-203ENST00000470258 ZBED9Q6R2W3 1325 aa12.89□□□□□ -0.35
NHLRC3-203ENST00000470258 ERICH3Q5RHP9 1530 aa12.88□□□□□ -0.35
NHLRC3-203ENST00000470258 IFT140Q96RY7 1462 aa12.88□□□□□ -0.35
NHLRC3-203ENST00000470258 FGD5Q6ZNL6 1462 aa12.87□□□□□ -0.35
NHLRC3-203ENST00000470258 PRKRIP1Q9H875 184 aaPredicted RBP12.86□□□□□ -0.35
NHLRC3-203ENST00000470258 POLR3GLQ9BT43 218 aa12.85□□□□□ -0.35
NHLRC3-203ENST00000470258 EIF4G2P78344 907 aaKnown RBP eCLIP12.84□□□□□ -0.35
NHLRC3-203ENST00000470258 EIF4G3O43432 1585 aaKnown RBP12.84□□□□□ -0.35
NHLRC3-203ENST00000470258 LRRC9Q6ZRR7 1453 aa12.82□□□□□ -0.36
NHLRC3-203ENST00000470258 TIAM1Q13009 1591 aa12.82□□□□□ -0.36
NHLRC3-203ENST00000470258 KIF27Q86VH2 1401 aa12.81□□□□□ -0.36
NHLRC3-203ENST00000470258 FHAD1B1AJZ9 1412 aa12.8□□□□□ -0.36
NHLRC3-203ENST00000470258 ABCA5Q8WWZ7 1642 aa12.8□□□□□ -0.36
NHLRC3-203ENST00000470258 CNTLNQ9NXG0 1405 aa12.79□□□□□ -0.36
NHLRC3-203ENST00000470258 C11orf95C9JLR9 678 aaPredicted RBP12.79□□□□□ -0.36
NHLRC3-203ENST00000470258 ZNF608Q9ULD9 1512 aaPredicted RBP12.79□□□□□ -0.36
NHLRC3-203ENST00000470258 NUDCQ9Y266 331 aa12.79□□□□□ -0.36
NHLRC3-203ENST00000470258 RAD54L2Q9Y4B4 1467 aa12.79□□□□□ -0.36
NHLRC3-203ENST00000470258 USP35Q9P2H5 1018 aa12.79□□□□□ -0.36
NHLRC3-203ENST00000470258 ABCA10Q8WWZ4 1543 aa12.78□□□□□ -0.36
NHLRC3-203ENST00000470258 PBRM1Q86U86 1689 aa12.78□□□□□ -0.36
NHLRC3-203ENST00000470258 PPM1GO15355 546 aaPredicted RBP12.78□□□□□ -0.36
NHLRC3-203ENST00000470258 CCDC18Q5T9S5 1454 aa12.77□□□□□ -0.36
NHLRC3-203ENST00000470258 PDE4AP27815 886 aa12.76□□□□□ -0.37
NHLRC3-203ENST00000470258 GSE1Q14687 1217 aa12.75□□□□□ -0.37
NHLRC3-203ENST00000470258 WASHC2CQ9Y4E1 1318 aa12.74□□□□□ -0.37
NHLRC3-203ENST00000470258 SLC4A3P48751 1232 aa12.74□□□□□ -0.37
NHLRC3-203ENST00000470258 DAXXQ9UER7 740 aaPredicted RBP12.74□□□□□ -0.37
NHLRC3-203ENST00000470258 SMG6Q86US8 1419 aaKnown RBP12.73□□□□□ -0.37
NHLRC3-203ENST00000470258 CHIC2Q9UKJ5 165 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms