RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CCDC61Q9Y6R9 512 aa13.81□□□□□ -0.2
CCDC88A-210ENST00000468534 MS4A3Q96HJ5 214 aa13.79□□□□□ -0.2
CCDC88A-210ENST00000468534 VASPP50552 380 aaPredicted RBP13.74□□□□□ -0.21
CCDC88A-210ENST00000468534 NUBP1P53384 320 aa13.74□□□□□ -0.21
CCDC88A-210ENST00000468534 LHX8Q68G74 356 aa13.71□□□□□ -0.21
CCDC88A-210ENST00000468534 KIF12Q96FN5 646 aa13.71□□□□□ -0.21
CCDC88A-210ENST00000468534 KLHL34Q8N239 644 aa13.69□□□□□ -0.22
CCDC88A-210ENST00000468534 MAP3K13O43283 966 aa13.68□□□□□ -0.22
CCDC88A-210ENST00000468534 FAM212AQ96EL1 285 aa13.68□□□□□ -0.22
CCDC88A-210ENST00000468534 DCAF8Q5TAQ9 597 aa13.63□□□□□ -0.23
CCDC88A-210ENST00000468534 PELP1Q8IZL8 1130 aaKnown RBP13.62□□□□□ -0.23
CCDC88A-210ENST00000468534 TRPC6Q9Y210 931 aa13.61□□□□□ -0.23
CCDC88A-210ENST00000468534 ATMINO43313 823 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-210ENST00000468534 ASTLQ6HA08 431 aaPredicted RBP13.59□□□□□ -0.23
CCDC88A-210ENST00000468534 PCDHB13Q9Y5F0 798 aa13.58□□□□□ -0.24
CCDC88A-210ENST00000468534 PYGBP11216 843 aa13.54□□□□□ -0.24
CCDC88A-210ENST00000468534 ATN1P54259 1190 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-210ENST00000468534 BMP2KQ9NSY1 1161 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-210ENST00000468534 IFNLR1Q8IU57 520 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-210ENST00000468534 METRNQ9UJH8 293 aa13.51□□□□□ -0.25
CCDC88A-210ENST00000468534 IFNL1Q8IU54 200 aa13.5□□□□□ -0.25
CCDC88A-210ENST00000468534 SLC39A7Q92504 469 aa13.49□□□□□ -0.25
CCDC88A-210ENST00000468534 SGIP1Q9BQI5 828 aa13.49□□□□□ -0.25
CCDC88A-210ENST00000468534 TIE1P35590 1138 aa13.48□□□□□ -0.25
CCDC88A-210ENST00000468534 POTEB2H3BUK9 544 aa13.46□□□□□ -0.25
CCDC88A-210ENST00000468534 TTLL13PA6NNM8 815 aa13.45□□□□□ -0.26
CCDC88A-210ENST00000468534 C7P10643 843 aa13.45□□□□□ -0.26
CCDC88A-210ENST00000468534 GSE1Q14687 1217 aa13.45□□□□□ -0.26
CCDC88A-210ENST00000468534 SPOCK2Q92563 424 aa13.44□□□□□ -0.26
CCDC88A-210ENST00000468534 CIZ1Q9ULV3 898 aaPredicted RBP13.4□□□□□ -0.26
CCDC88A-210ENST00000468534 PCDHB8Q9UN66 801 aa13.4□□□□□ -0.26
CCDC88A-210ENST00000468534 TMEM106CQ9BVX2 250 aa13.39□□□□□ -0.27
CCDC88A-210ENST00000468534 TRIM35Q9UPQ4 493 aa13.38□□□□□ -0.27
CCDC88A-210ENST00000468534 OTUD5Q96G74 571 aa13.34□□□□□ -0.27
CCDC88A-210ENST00000468534 SEC24BO95487 1268 aa13.32□□□□□ -0.28
CCDC88A-210ENST00000468534 POTEFA5A3E0 1075 aa13.31□□□□□ -0.28
CCDC88A-210ENST00000468534 POTEJP0CG39 1038 aa13.29□□□□□ -0.28
CCDC88A-210ENST00000468534 COLQQ9Y215 455 aaPredicted RBP13.29□□□□□ -0.28
CCDC88A-210ENST00000468534 ZNF467Q7Z7K2 595 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-210ENST00000468534 CHRM1P11229 460 aaPredicted RBP13.26□□□□□ -0.29
CCDC88A-210ENST00000468534 IER5LQ5T953 404 aa13.24□□□□□ -0.29
CCDC88A-210ENST00000468534 MAMSTRQ6ZN01 415 aa13.2□□□□□ -0.3
CCDC88A-210ENST00000468534 SCUBE2Q9NQ36 999 aa13.19□□□□□ -0.3
CCDC88A-210ENST00000468534 PLCG2P16885 1265 aa13.18□□□□□ -0.3
CCDC88A-210ENST00000468534 PSEN1P49768 467 aa13.18□□□□□ -0.3
CCDC88A-210ENST00000468534 GOLGA2Q08379 1002 aa13.16□□□□□ -0.3
CCDC88A-210ENST00000468534 IRX5P78411 483 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-210ENST00000468534 PDAP1Q13442 181 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-210ENST00000468534 MKRN3Q13064 507 aaKnown RBP13.11□□□□□ -0.31
CCDC88A-210ENST00000468534 OCEL1Q9H607 264 aa13.1□□□□□ -0.31
CCDC88A-210ENST00000468534 TRIM41Q8WV44 630 aa13.09□□□□□ -0.31
CCDC88A-210ENST00000468534 CABP2Q9NPB3 220 aa13.06□□□□□ -0.32
CCDC88A-210ENST00000468534 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.02□□□□□ -0.339e-8■■■■■ 33.5
CCDC88A-210ENST00000468534 PDCD7Q8N8D1 485 aaKnown RBP13□□□□□ -0.33
CCDC88A-210ENST00000468534 RNF25Q96BH1 459 aaPredicted RBP13□□□□□ -0.33
CCDC88A-210ENST00000468534 SLAIN1Q8ND83 568 aa12.99□□□□□ -0.33
CCDC88A-210ENST00000468534 RIOK3O14730 519 aaKnown RBP12.98□□□□□ -0.33
CCDC88A-210ENST00000468534 FAM163AQ96GL9 167 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-210ENST00000468534 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 POTEMA6NI47 508 aa12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 ECM2O94769 699 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 DPY19L2Q6NUT2 758 aa12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 EFCAB3Q8N7B9 438 aa12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 ZFP91Q96JP5 570 aaPredicted RBP12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.91□□□□□ -0.34
CCDC88A-210ENST00000468534 VGFO15240 615 aaPredicted RBP12.9□□□□□ -0.34
CCDC88A-210ENST00000468534 POTEGQ6S5H5 508 aa12.89□□□□□ -0.35
CCDC88A-210ENST00000468534 L3MBTL3Q96JM7 780 aaPredicted RBP12.89□□□□□ -0.35
CCDC88A-210ENST00000468534 C3orf67Q6ZVT6 689 aa12.88□□□□□ -0.35
CCDC88A-210ENST00000468534 LCE2DQ5TA82 110 aaPredicted RBP12.87□□□□□ -0.35
CCDC88A-210ENST00000468534 ILDR1Q86SU0 546 aaPredicted RBP12.85□□□□□ -0.35
CCDC88A-210ENST00000468534 G3V3G9 751 aa12.83□□□□□ -0.36
CCDC88A-210ENST00000468534 PKD2Q13563 968 aa12.83□□□□□ -0.36
CCDC88A-210ENST00000468534 BCL11BQ9C0K0 894 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-210ENST00000468534 BOLA1Q9Y3E2 137 aa12.8□□□□□ -0.36
CCDC88A-210ENST00000468534 RGL2O15211 777 aa12.79□□□□□ -0.36
CCDC88A-210ENST00000468534 TAOK2Q9UL54 1235 aa12.79□□□□□ -0.36
CCDC88A-210ENST00000468534 STK24Q9Y6E0 443 aa12.77□□□□□ -0.37
CCDC88A-210ENST00000468534 STK25O00506 426 aa12.75□□□□□ -0.37
CCDC88A-210ENST00000468534 SOX12O15370 315 aa12.75□□□□□ -0.37
CCDC88A-210ENST00000468534 ST18O60284 1047 aa12.75□□□□□ -0.37
CCDC88A-210ENST00000468534 PHF8Q9UPP1 1060 aa12.75□□□□□ -0.37
CCDC88A-210ENST00000468534 SNPHO15079 494 aa12.71□□□□□ -0.37
CCDC88A-210ENST00000468534 PLSCR2Q9NRY7 297 aa12.71□□□□□ -0.37
CCDC88A-210ENST00000468534 MS4A4AQ96JQ5 239 aa12.7□□□□□ -0.38
CCDC88A-210ENST00000468534 MICALL2Q8IY33 904 aa12.66□□□□□ -0.38
CCDC88A-210ENST00000468534 TMEM121BQ9BXQ6 578 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-210ENST00000468534 NLRP6P59044 892 aa12.65□□□□□ -0.38
CCDC88A-210ENST00000468534 MARVELD3Q96A59 401 aa12.62□□□□□ -0.39
CCDC88A-210ENST00000468534 MFRPQ9BY79 579 aa12.61□□□□□ -0.39
CCDC88A-210ENST00000468534 FBXO22Q8NEZ5 403 aa12.6□□□□□ -0.39
CCDC88A-210ENST00000468534 PCDH10Q9P2E7 1040 aa12.59□□□□□ -0.39
CCDC88A-210ENST00000468534 TMEM92Q6UXU6 159 aa12.57□□□□□ -0.4
CCDC88A-210ENST00000468534 CDAN1Q8IWY9 1227 aa12.57□□□□□ -0.4
CCDC88A-210ENST00000468534 HOXB3P14651 431 aaPredicted RBP12.53□□□□□ -0.4
CCDC88A-210ENST00000468534 EMP3P54852 163 aa12.53□□□□□ -0.4
CCDC88A-210ENST00000468534 ZNF710Q8N1W2 664 aa12.51□□□□□ -0.41
CCDC88A-210ENST00000468534 CHGAP10645 457 aaKnown RBP12.49□□□□□ -0.41
CCDC88A-210ENST00000468534 DOK7Q18PE1 504 aa12.49□□□□□ -0.41
CCDC88A-210ENST00000468534 HS6ST3Q8IZP7 471 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms