RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 MLECQ14165 292 aa4.17□□□□□ -1.74
LIG4-203ENST00000442234 ARID4BQ4LE39 1312 aaPredicted RBP4.17□□□□□ -1.74
LIG4-203ENST00000442234 RB1CC1Q8TDY2 1594 aa4.17□□□□□ -1.74
LIG4-203ENST00000442234 ABCB7O75027 752 aa4.17□□□□□ -1.74
LIG4-203ENST00000442234 NPM1P06748 294 aaKnown RBP eCLIP4.17□□□□□ -1.74
LIG4-203ENST00000442234 DCAF1Q9Y4B6 1507 aa4.16□□□□□ -1.74
LIG4-203ENST00000442234 DAXXQ9UER7 740 aaPredicted RBP4.16□□□□□ -1.74
LIG4-203ENST00000442234 NACADO15069 1562 aa4.15□□□□□ -1.74
LIG4-203ENST00000442234 PLEKHG5O94827 1062 aa4.15□□□□□ -1.74
LIG4-203ENST00000442234 KCNH8Q96L42 1107 aa4.15□□□□□ -1.74
LIG4-203ENST00000442234 CC2D2AQ9P2K1 1620 aa4.15□□□□□ -1.75
LIG4-203ENST00000442234 ILDR1Q86SU0 546 aaPredicted RBP4.14□□□□□ -1.75
LIG4-203ENST00000442234 YTHDC1Q96MU7 727 aaKnown RBP4.14□□□□□ -1.75
LIG4-203ENST00000442234 SMARCA2P51531 1590 aa4.13□□□□□ -1.75
LIG4-203ENST00000442234 NESP48681 1621 aa4.13□□□□□ -1.75
LIG4-203ENST00000442234 P3H3Q8IVL6 736 aa4.13□□□□□ -1.75
LIG4-203ENST00000442234 PEG3Q9GZU2 1588 aa4.12□□□□□ -1.75
LIG4-203ENST00000442234 ANO8Q9HCE9 1232 aaPredicted RBP4.11□□□□□ -1.75
LIG4-203ENST00000442234 STAG3Q9UJ98 1225 aa4.1□□□□□ -1.75
LIG4-203ENST00000442234 FAM69CQ0P6D2 419 aa4.1□□□□□ -1.75
LIG4-203ENST00000442234 SPDYE4A6NLX3 237 aa4.09□□□□□ -1.75
LIG4-203ENST00000442234 PODXL2Q9NZ53 605 aa4.08□□□□□ -1.76
LIG4-203ENST00000442234 REM2Q8IYK8 340 aaPredicted RBP4.07□□□□□ -1.76
LIG4-203ENST00000442234 TRIM26Q12899 539 aaPredicted RBP4.07□□□□□ -1.76
LIG4-203ENST00000442234 CCDC136Q96JN2 1154 aa4.07□□□□□ -1.76
LIG4-203ENST00000442234 SPDYE1Q8NFV5 336 aaPredicted RBP4.07□□□□□ -1.76
LIG4-203ENST00000442234 DIEXFQ68CQ4 756 aaKnown RBP4.06□□□□□ -1.76
LIG4-203ENST00000442234 ZNF692Q9BU19 519 aaPredicted RBP4.06□□□□□ -1.76
LIG4-203ENST00000442234 EIF4G1Q04637 1599 aaKnown RBP4.06□□□□□ -1.76
LIG4-203ENST00000442234 KIF21AQ7Z4S6 1674 aa4.06□□□□□ -1.76
LIG4-203ENST00000442234 UBE2Q2Q8WVN8 375 aa4.05□□□□□ -1.76
LIG4-203ENST00000442234 TDRD9Q8NDG6 1382 aaKnown RBP4.05□□□□□ -1.76
LIG4-203ENST00000442234 FXR2P51116 673 aaKnown RBP eCLIP4.05□□□□□ -1.76
LIG4-203ENST00000442234 PKNOX2Q96KN3 472 aa4.05□□□□□ -1.76
LIG4-203ENST00000442234 HSPA2P54652 639 aa4.05□□□□□ -1.76
LIG4-203ENST00000442234 PIP4K2BP78356 416 aa4.04□□□□□ -1.76
LIG4-203ENST00000442234 BCANQ96GW7 911 aa4.04□□□□□ -1.76
LIG4-203ENST00000442234 DISP3Q9P2K9 1392 aa4.04□□□□□ -1.76
LIG4-203ENST00000442234 FBXO3Q9UK99 471 aa4.03□□□□□ -1.77
LIG4-203ENST00000442234 WDR97A6NE52 1622 aa4.02□□□□□ -1.77
LIG4-203ENST00000442234 ESF1Q9H501 851 aaKnown RBP4.02□□□□□ -1.77
LIG4-203ENST00000442234 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.02□□□□□ -1.77
LIG4-203ENST00000442234 SALL2Q9Y467 1007 aaPredicted RBP4.02□□□□□ -1.77
LIG4-203ENST00000442234 SRCAPQ6ZRS2 3230 aa4.01□□□□□ -1.77
LIG4-203ENST00000442234 CCER1Q8TC90 406 aaPredicted RBP4.01□□□□□ -1.77
LIG4-203ENST00000442234 CUX2O14529 1486 aa4.01□□□□□ -1.77
LIG4-203ENST00000442234 KIF13AQ9H1H9 1805 aa4.01□□□□□ -1.77
LIG4-203ENST00000442234 PITPNM1O00562 1244 aa4□□□□□ -1.77
LIG4-203ENST00000442234 GLIPR1L2Q4G1C9 344 aa4□□□□□ -1.77
LIG4-203ENST00000442234 TSHZ2Q9NRE2 1034 aa4□□□□□ -1.77
LIG4-203ENST00000442234 CLCN6P51797 869 aa3.99□□□□□ -1.77
LIG4-203ENST00000442234 ZNF777Q9ULD5 760 aaPredicted RBP3.99□□□□□ -1.77
LIG4-203ENST00000442234 NEFLP07196 543 aa3.98□□□□□ -1.77
LIG4-203ENST00000442234 BAZ1BQ9UIG0 1483 aaKnown RBP3.98□□□□□ -1.77
LIG4-203ENST00000442234 DEKP35659 375 aaKnown RBP3.98□□□□□ -1.77
LIG4-203ENST00000442234 ERICH6BQ5W0A0 696 aa3.97□□□□□ -1.77
LIG4-203ENST00000442234 PDS5BQ9NTI5 1447 aa3.97□□□□□ -1.77
LIG4-203ENST00000442234 FKBP8Q14318 412 aa3.97□□□□□ -1.77
LIG4-203ENST00000442234 AQRO60306 1485 aaKnown RBP eCLIP3.97□□□□□ -1.77
LIG4-203ENST00000442234 CHRDL2Q6WN34 429 aa3.97□□□□□ -1.77
LIG4-203ENST00000442234 CREBZFQ9NS37 354 aa3.96□□□□□ -1.78
LIG4-203ENST00000442234 CLSPNQ9HAW4 1339 aa3.96□□□□□ -1.78
LIG4-203ENST00000442234 A0A0G2JS52 829 aa3.96□□□□□ -1.78
LIG4-203ENST00000442234 UBTFP17480 764 aaKnown RBP3.95□□□□□ -1.78
LIG4-203ENST00000442234 RTL5Q5HYW3 569 aaPredicted RBP3.95□□□□□ -1.78
LIG4-203ENST00000442234 A0A0U1RQG5 324 aaPredicted RBP3.95□□□□□ -1.78
LIG4-203ENST00000442234 PIP4P2Q8N4L2 257 aa3.95□□□□□ -1.78
LIG4-203ENST00000442234 SUPT16HQ9Y5B9 1047 aaKnown RBP3.95□□□□□ -1.78
LIG4-203ENST00000442234 ZBTB47Q9UFB7 747 aaPredicted RBP3.94□□□□□ -1.78
LIG4-203ENST00000442234 ZCCHC6Q5VYS8 1495 aaKnown RBP3.94□□□□□ -1.78
LIG4-203ENST00000442234 PPRC1Q5VV67 1664 aaKnown RBP3.94□□□□□ -1.78
LIG4-203ENST00000442234 CEBPAP49715 358 aaPredicted RBP3.94□□□□□ -1.78
LIG4-203ENST00000442234 C14orf37Q86TY3 774 aa3.94□□□□□ -1.78
LIG4-203ENST00000442234 MNX1P50219 401 aaPredicted RBP3.93□□□□□ -1.78
LIG4-203ENST00000442234 WDR62O43379 1518 aa3.93□□□□□ -1.78
LIG4-203ENST00000442234 HMGXB3Q12766 1538 aa3.93□□□□□ -1.78
LIG4-203ENST00000442234 PRR29P0C7W0 189 aa3.92□□□□□ -1.78
LIG4-203ENST00000442234 RBM33Q96EV2 1170 aaKnown RBP3.92□□□□□ -1.78
LIG4-203ENST00000442234 UBAP1LF5GYI3 381 aa3.92□□□□□ -1.78
LIG4-203ENST00000442234 PDE4CQ08493 712 aa3.92□□□□□ -1.78
LIG4-203ENST00000442234 NBR1Q14596 966 aa3.92□□□□□ -1.78
LIG4-203ENST00000442234 C19orf67A6NJJ6 358 aa3.91□□□□□ -1.78
LIG4-203ENST00000442234 RBM19Q9Y4C8 960 aaKnown RBP3.91□□□□□ -1.78
LIG4-203ENST00000442234 CADPSQ9ULU8 1353 aa3.91□□□□□ -1.78
LIG4-203ENST00000442234 CHGAP10645 457 aaKnown RBP3.91□□□□□ -1.78
LIG4-203ENST00000442234 VSIG10Q8N0Z9 540 aa3.91□□□□□ -1.78
LIG4-203ENST00000442234 RAPGEF3O95398 923 aa3.9□□□□□ -1.78
LIG4-203ENST00000442234 JPH4Q96JJ6 628 aa3.9□□□□□ -1.78
LIG4-203ENST00000442234 ITGAEP38570 1179 aa3.9□□□□□ -1.79
LIG4-203ENST00000442234 CHRM1P11229 460 aaPredicted RBP3.9□□□□□ -1.79
LIG4-203ENST00000442234 ILDR2Q71H61 639 aa3.89□□□□□ -1.79
LIG4-203ENST00000442234 RIMBP3CA6NJZ7 1639 aa3.89□□□□□ -1.79
LIG4-203ENST00000442234 RIMBP3BA6NNM3 1639 aa3.89□□□□□ -1.79
LIG4-203ENST00000442234 RIMBP3Q9UFD9 1639 aa3.89□□□□□ -1.79
LIG4-203ENST00000442234 LOC105371045A0A1W2PR82 267 aa3.89□□□□□ -1.79
LIG4-203ENST00000442234 ZNF608Q9ULD9 1512 aaPredicted RBP3.89□□□□□ -1.79
LIG4-203ENST00000442234 PDIA4P13667 645 aaKnown RBP3.89□□□□□ -1.79
LIG4-203ENST00000442234 VASPP50552 380 aaPredicted RBP3.89□□□□□ -1.79
LIG4-203ENST00000442234 RSF1Q96T23 1441 aaPredicted RBP3.89□□□□□ -1.79
LIG4-203ENST00000442234 ATAD2BQ9ULI0 1458 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms