RNA–Protein interactions for RNA: ENST00000436638.5

ECHDC1-208, Transcript of ethylmalonyl-CoA decarboxylase 1, human

APPRIS ALT2 TSL 3

Gene ECHDC1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-208	ENST00000436638	HAX1	O00165	279 aa		11.03	□□□□□ -0.64
ECHDC1-208	ENST00000436638	VASP	P50552	380 aa	Predicted RBP	11.03	□□□□□ -0.64
ECHDC1-208	ENST00000436638	MROH2B	Q7Z745	1585 aa		11.03	□□□□□ -0.64
ECHDC1-208	ENST00000436638	SMARCA2	P51531	1590 aa		10.99	□□□□□ -0.65
ECHDC1-208	ENST00000436638	NPM1	P06748	294 aa	Known RBP eCLIP	10.98	□□□□□ -0.65
ECHDC1-208	ENST00000436638	MNX1	P50219	401 aa	Predicted RBP	10.98	□□□□□ -0.65
ECHDC1-208	ENST00000436638	ATAD2B	Q9ULI0	1458 aa		10.97	□□□□□ -0.65
ECHDC1-208	ENST00000436638	RSF1	Q96T23	1441 aa	Predicted RBP	10.96	□□□□□ -0.65
ECHDC1-208	ENST00000436638	KLHL34	Q8N239	644 aa		10.95	□□□□□ -0.66
ECHDC1-208	ENST00000436638	ZBTB47	Q9UFB7	747 aa	Predicted RBP	10.95	□□□□□ -0.66
ECHDC1-208	ENST00000436638	NCAPD3	P42695	1498 aa		10.93	□□□□□ -0.66
ECHDC1-208	ENST00000436638	PEG3	Q9GZU2	1588 aa		10.92	□□□□□ -0.66
ECHDC1-208	ENST00000436638	BAZ1B	Q9UIG0	1483 aa	Known RBP	10.92	□□□□□ -0.66
ECHDC1-208	ENST00000436638	C19orf67	A6NJJ6	358 aa		10.91	□□□□□ -0.66
ECHDC1-208	ENST00000436638	WIZ	O95785	1651 aa		10.91	□□□□□ -0.66
ECHDC1-208	ENST00000436638	SUPT5H	O00267	1087 aa	Known RBP	10.9	□□□□□ -0.66
ECHDC1-208	ENST00000436638	CD44	P16070	742 aa	Known RBP	10.9	□□□□□ -0.66
ECHDC1-208	ENST00000436638	HMGXB3	Q12766	1538 aa		10.89	□□□□□ -0.67
ECHDC1-208	ENST00000436638	EVX2	Q03828	476 aa		10.88	□□□□□ -0.67
ECHDC1-208	ENST00000436638	IFNLR1	Q8IU57	520 aa	Predicted RBP	10.87	□□□□□ -0.67
ECHDC1-208	ENST00000436638	PAK3	O75914	559 aa	Predicted RBP	10.85	□□□□□ -0.67
ECHDC1-208	ENST00000436638	ZRANB1	Q9UGI0	708 aa		10.84	□□□□□ -0.67
ECHDC1-208	ENST00000436638	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.83	□□□□□ -0.68
ECHDC1-208	ENST00000436638	TOP2A	P11388	1531 aa	Known RBP	10.82	□□□□□ -0.68
ECHDC1-208	ENST00000436638	NUBP1	P53384	320 aa		10.8	□□□□□ -0.68
ECHDC1-208	ENST00000436638	RASEF	Q8IZ41	740 aa		10.8	□□□□□ -0.68
ECHDC1-208	ENST00000436638	SP7	Q8TDD2	431 aa	Predicted RBP	10.78	□□□□□ -0.68
ECHDC1-208	ENST00000436638	SPOCK2	Q92563	424 aa		10.78	□□□□□ -0.68
ECHDC1-208	ENST00000436638	DCAF8	Q5TAQ9	597 aa		10.75	□□□□□ -0.69
ECHDC1-208	ENST00000436638	FAM212A	Q96EL1	285 aa		10.75	□□□□□ -0.69
ECHDC1-208	ENST00000436638	ZNF579	Q8NAF0	562 aa	Known RBP	10.71	□□□□□ -0.69
ECHDC1-208	ENST00000436638	PHF12	Q96QT6	1004 aa		10.71	□□□□□ -0.69
ECHDC1-208	ENST00000436638	CCDC88B	A6NC98	1476 aa		10.69	□□□□□ -0.7
ECHDC1-208	ENST00000436638	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.68	□□□□□ -0.7
ECHDC1-208	ENST00000436638	CCDC61	Q9Y6R9	512 aa		10.68	□□□□□ -0.7
ECHDC1-208	ENST00000436638	GABBR2	O75899	941 aa		10.67	□□□□□ -0.7
ECHDC1-208	ENST00000436638	GSE1	Q14687	1217 aa		10.67	□□□□□ -0.7
ECHDC1-208	ENST00000436638	CADPS	Q9ULU8	1353 aa		10.65	□□□□□ -0.7
ECHDC1-208	ENST00000436638	LAMC3	Q9Y6N6	1575 aa		10.64	□□□□□ -0.71
ECHDC1-208	ENST00000436638	CLCN6	P51797	869 aa		10.63	□□□□□ -0.71
ECHDC1-208	ENST00000436638	NES	P48681	1621 aa		10.62	□□□□□ -0.71
ECHDC1-208	ENST00000436638	PYGB	P11216	843 aa		10.61	□□□□□ -0.71
ECHDC1-208	ENST00000436638	PDS5B	Q9NTI5	1447 aa		10.6	□□□□□ -0.71
ECHDC1-208	ENST00000436638	KIF12	Q96FN5	646 aa		10.6	□□□□□ -0.71
ECHDC1-208	ENST00000436638	CFTR	P13569	1480 aa		10.6	□□□□□ -0.71
ECHDC1-208	ENST00000436638	ERCC6	Q03468	1493 aa		10.59	□□□□□ -0.71
ECHDC1-208	ENST00000436638	MAP3K13	O43283	966 aa		10.58	□□□□□ -0.72
ECHDC1-208	ENST00000436638	GALR2	O43603	387 aa	Predicted RBP	10.58	□□□□□ -0.72
ECHDC1-208	ENST00000436638	MS4A3	Q96HJ5	214 aa		10.56	□□□□□ -0.72
ECHDC1-208	ENST00000436638	PCDHB13	Q9Y5F0	798 aa		10.55	□□□□□ -0.72
ECHDC1-208	ENST00000436638	MYT1	Q01538	1121 aa		10.53	□□□□□ -0.72
ECHDC1-208	ENST00000436638	FANCD2	Q9BXW9	1451 aa		10.53	□□□□□ -0.72
ECHDC1-208	ENST00000436638	DCBLD2	Q96PD2	775 aa		10.52	□□□□□ -0.73
ECHDC1-208	ENST00000436638	CEP164	Q9UPV0	1460 aa		10.51	□□□□□ -0.73
ECHDC1-208	ENST00000436638	PRDM2	Q13029	1718 aa		10.5	□□□□□ -0.73
ECHDC1-208	ENST00000436638	CHRM1	P11229	460 aa	Predicted RBP	10.5	□□□□□ -0.73
ECHDC1-208	ENST00000436638	SGIP1	Q9BQI5	828 aa		10.5	□□□□□ -0.73
ECHDC1-208	ENST00000436638	IFNL1	Q8IU54	200 aa		10.49	□□□□□ -0.73
ECHDC1-208	ENST00000436638	TRIM41	Q8WV44	630 aa		10.49	□□□□□ -0.73
ECHDC1-208	ENST00000436638	KIF21A	Q7Z4S6	1674 aa		10.47	□□□□□ -0.73
ECHDC1-208	ENST00000436638	PCDHB8	Q9UN66	801 aa		10.47	□□□□□ -0.73
ECHDC1-208	ENST00000436638	MRC2	Q9UBG0	1479 aa		10.45	□□□□□ -0.74
ECHDC1-208	ENST00000436638	TTBK1	Q5TCY1	1321 aa	Predicted RBP	10.45	□□□□□ -0.74
ECHDC1-208	ENST00000436638	ECM2	O94769	699 aa	Predicted RBP	10.45	□□□□□ -0.74
ECHDC1-208	ENST00000436638	TRPC6	Q9Y210	931 aa		10.45	□□□□□ -0.74
ECHDC1-208	ENST00000436638	PKD2	Q13563	968 aa		10.44	□□□□□ -0.74
ECHDC1-208	ENST00000436638	ZNF467	Q7Z7K2	595 aa	Predicted RBP	10.44	□□□□□ -0.74
ECHDC1-208	ENST00000436638	ABCC8	Q09428	1581 aa		10.41	□□□□□ -0.74
ECHDC1-208	ENST00000436638	POTEI	P0CG38	1075 aa		10.41	□□□□□ -0.74
ECHDC1-208	ENST00000436638	THOC2	Q8NI27	1593 aa	Known RBP	10.4	□□□□□ -0.74
ECHDC1-208	ENST00000436638	TIE1	P35590	1138 aa		10.39	□□□□□ -0.75
ECHDC1-208	ENST00000436638	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.39	□□□□□ -0.75
ECHDC1-208	ENST00000436638	WDR62	O43379	1518 aa		10.38	□□□□□ -0.75
ECHDC1-208	ENST00000436638	URB2	Q14146	1524 aa	Known RBP	10.38	□□□□□ -0.75
ECHDC1-208	ENST00000436638	CUX2	O14529	1486 aa		10.38	□□□□□ -0.75
ECHDC1-208	ENST00000436638	ATMIN	O43313	823 aa	Predicted RBP	10.38	□□□□□ -0.75
ECHDC1-208	ENST00000436638	TMEM106C	Q9BVX2	250 aa		10.38	□□□□□ -0.75
ECHDC1-208	ENST00000436638	RTN4	Q9NQC3	1192 aa	Known RBP	10.38	□□□□□ -0.75
ECHDC1-208	ENST00000436638	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.37	□□□□□ -0.75
ECHDC1-208	ENST00000436638	DNMBP	Q6XZF7	1577 aa		10.37	□□□□□ -0.75
ECHDC1-208	ENST00000436638	TOPBP1	Q92547	1522 aa		10.37	□□□□□ -0.75
ECHDC1-208	ENST00000436638	TTLL13P	A6NNM8	815 aa		10.36	□□□□□ -0.75
ECHDC1-208	ENST00000436638	ASTL	Q6HA08	431 aa	Predicted RBP	10.36	□□□□□ -0.75
ECHDC1-208	ENST00000436638	RIOK3	O14730	519 aa	Known RBP	10.35	□□□□□ -0.75
ECHDC1-208	ENST00000436638	PSEN1	P49768	467 aa		10.35	□□□□□ -0.75
ECHDC1-208	ENST00000436638	ATN1	P54259	1190 aa	Predicted RBP	10.35	□□□□□ -0.75
ECHDC1-208	ENST00000436638	PDAP1	Q13442	181 aa	Known RBP	10.34	□□□□□ -0.75
ECHDC1-208	ENST00000436638	RNF25	Q96BH1	459 aa	Predicted RBP	10.34	□□□□□ -0.75
ECHDC1-208	ENST00000436638	CUX1	P39880	1505 aa		10.33	□□□□□ -0.76
ECHDC1-208	ENST00000436638	PELP1	Q8IZL8	1130 aa	Known RBP	10.33	□□□□□ -0.76
ECHDC1-208	ENST00000436638	RGL2	O15211	777 aa		10.32	□□□□□ -0.76
ECHDC1-208	ENST00000436638	AMER1	Q5JTC6	1135 aa	Predicted RBP	10.31	□□□□□ -0.76
ECHDC1-208	ENST00000436638	DAXX	Q9UER7	740 aa	Predicted RBP	10.31	□□□□□ -0.76
ECHDC1-208	ENST00000436638	TRIM35	Q9UPQ4	493 aa		10.3	□□□□□ -0.76
ECHDC1-208	ENST00000436638	FGD5	Q6ZNL6	1462 aa		10.3	□□□□□ -0.76
ECHDC1-208	ENST00000436638	SOGA1	O94964	1423 aa		10.29	□□□□□ -0.76
ECHDC1-208	ENST00000436638	IFT140	Q96RY7	1462 aa		10.29	□□□□□ -0.76
ECHDC1-208	ENST00000436638	TOP2B	Q02880	1626 aa		10.29	□□□□□ -0.76
ECHDC1-208	ENST00000436638	SYNJ1	O43426	1573 aa		10.28	□□□□□ -0.76
ECHDC1-208	ENST00000436638	VGF	O15240	615 aa	Predicted RBP	10.28	□□□□□ -0.76

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