RNA–Protein interactions for RNA: ENST00000436638.5

ECHDC1-208, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS ALT2 TSL 3

Gene ECHDC1, Length 766 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-208ENST00000436638 HAX1O00165 279 aa11.03□□□□□ -0.64
ECHDC1-208ENST00000436638 VASPP50552 380 aaPredicted RBP11.03□□□□□ -0.64
ECHDC1-208ENST00000436638 MROH2BQ7Z745 1585 aa11.03□□□□□ -0.64
ECHDC1-208ENST00000436638 SMARCA2P51531 1590 aa10.99□□□□□ -0.65
ECHDC1-208ENST00000436638 NPM1P06748 294 aaKnown RBP eCLIP10.98□□□□□ -0.65
ECHDC1-208ENST00000436638 MNX1P50219 401 aaPredicted RBP10.98□□□□□ -0.65
ECHDC1-208ENST00000436638 ATAD2BQ9ULI0 1458 aa10.97□□□□□ -0.65
ECHDC1-208ENST00000436638 RSF1Q96T23 1441 aaPredicted RBP10.96□□□□□ -0.65
ECHDC1-208ENST00000436638 KLHL34Q8N239 644 aa10.95□□□□□ -0.66
ECHDC1-208ENST00000436638 ZBTB47Q9UFB7 747 aaPredicted RBP10.95□□□□□ -0.66
ECHDC1-208ENST00000436638 NCAPD3P42695 1498 aa10.93□□□□□ -0.66
ECHDC1-208ENST00000436638 PEG3Q9GZU2 1588 aa10.92□□□□□ -0.66
ECHDC1-208ENST00000436638 BAZ1BQ9UIG0 1483 aaKnown RBP10.92□□□□□ -0.66
ECHDC1-208ENST00000436638 C19orf67A6NJJ6 358 aa10.91□□□□□ -0.66
ECHDC1-208ENST00000436638 WIZO95785 1651 aa10.91□□□□□ -0.66
ECHDC1-208ENST00000436638 SUPT5HO00267 1087 aaKnown RBP10.9□□□□□ -0.66
ECHDC1-208ENST00000436638 CD44P16070 742 aaKnown RBP10.9□□□□□ -0.66
ECHDC1-208ENST00000436638 HMGXB3Q12766 1538 aa10.89□□□□□ -0.67
ECHDC1-208ENST00000436638 EVX2Q03828 476 aa10.88□□□□□ -0.67
ECHDC1-208ENST00000436638 IFNLR1Q8IU57 520 aaPredicted RBP10.87□□□□□ -0.67
ECHDC1-208ENST00000436638 PAK3O75914 559 aaPredicted RBP10.85□□□□□ -0.67
ECHDC1-208ENST00000436638 ZRANB1Q9UGI0 708 aa10.84□□□□□ -0.67
ECHDC1-208ENST00000436638 TSPYL2Q9H2G4 693 aaPredicted RBP10.83□□□□□ -0.68
ECHDC1-208ENST00000436638 TOP2AP11388 1531 aaKnown RBP10.82□□□□□ -0.68
ECHDC1-208ENST00000436638 NUBP1P53384 320 aa10.8□□□□□ -0.68
ECHDC1-208ENST00000436638 RASEFQ8IZ41 740 aa10.8□□□□□ -0.68
ECHDC1-208ENST00000436638 SP7Q8TDD2 431 aaPredicted RBP10.78□□□□□ -0.68
ECHDC1-208ENST00000436638 SPOCK2Q92563 424 aa10.78□□□□□ -0.68
ECHDC1-208ENST00000436638 DCAF8Q5TAQ9 597 aa10.75□□□□□ -0.69
ECHDC1-208ENST00000436638 FAM212AQ96EL1 285 aa10.75□□□□□ -0.69
ECHDC1-208ENST00000436638 ZNF579Q8NAF0 562 aaKnown RBP10.71□□□□□ -0.69
ECHDC1-208ENST00000436638 PHF12Q96QT6 1004 aa10.71□□□□□ -0.69
ECHDC1-208ENST00000436638 CCDC88BA6NC98 1476 aa10.69□□□□□ -0.7
ECHDC1-208ENST00000436638 CIZ1Q9ULV3 898 aaPredicted RBP10.68□□□□□ -0.7
ECHDC1-208ENST00000436638 CCDC61Q9Y6R9 512 aa10.68□□□□□ -0.7
ECHDC1-208ENST00000436638 GABBR2O75899 941 aa10.67□□□□□ -0.7
ECHDC1-208ENST00000436638 GSE1Q14687 1217 aa10.67□□□□□ -0.7
ECHDC1-208ENST00000436638 CADPSQ9ULU8 1353 aa10.65□□□□□ -0.7
ECHDC1-208ENST00000436638 LAMC3Q9Y6N6 1575 aa10.64□□□□□ -0.71
ECHDC1-208ENST00000436638 CLCN6P51797 869 aa10.63□□□□□ -0.71
ECHDC1-208ENST00000436638 NESP48681 1621 aa10.62□□□□□ -0.71
ECHDC1-208ENST00000436638 PYGBP11216 843 aa10.61□□□□□ -0.71
ECHDC1-208ENST00000436638 PDS5BQ9NTI5 1447 aa10.6□□□□□ -0.71
ECHDC1-208ENST00000436638 KIF12Q96FN5 646 aa10.6□□□□□ -0.71
ECHDC1-208ENST00000436638 CFTRP13569 1480 aa10.6□□□□□ -0.71
ECHDC1-208ENST00000436638 ERCC6Q03468 1493 aa10.59□□□□□ -0.71
ECHDC1-208ENST00000436638 MAP3K13O43283 966 aa10.58□□□□□ -0.72
ECHDC1-208ENST00000436638 GALR2O43603 387 aaPredicted RBP10.58□□□□□ -0.72
ECHDC1-208ENST00000436638 MS4A3Q96HJ5 214 aa10.56□□□□□ -0.72
ECHDC1-208ENST00000436638 PCDHB13Q9Y5F0 798 aa10.55□□□□□ -0.72
ECHDC1-208ENST00000436638 MYT1Q01538 1121 aa10.53□□□□□ -0.72
ECHDC1-208ENST00000436638 FANCD2Q9BXW9 1451 aa10.53□□□□□ -0.72
ECHDC1-208ENST00000436638 DCBLD2Q96PD2 775 aa10.52□□□□□ -0.73
ECHDC1-208ENST00000436638 CEP164Q9UPV0 1460 aa10.51□□□□□ -0.73
ECHDC1-208ENST00000436638 PRDM2Q13029 1718 aa10.5□□□□□ -0.73
ECHDC1-208ENST00000436638 CHRM1P11229 460 aaPredicted RBP10.5□□□□□ -0.73
ECHDC1-208ENST00000436638 SGIP1Q9BQI5 828 aa10.5□□□□□ -0.73
ECHDC1-208ENST00000436638 IFNL1Q8IU54 200 aa10.49□□□□□ -0.73
ECHDC1-208ENST00000436638 TRIM41Q8WV44 630 aa10.49□□□□□ -0.73
ECHDC1-208ENST00000436638 KIF21AQ7Z4S6 1674 aa10.47□□□□□ -0.73
ECHDC1-208ENST00000436638 PCDHB8Q9UN66 801 aa10.47□□□□□ -0.73
ECHDC1-208ENST00000436638 MRC2Q9UBG0 1479 aa10.45□□□□□ -0.74
ECHDC1-208ENST00000436638 TTBK1Q5TCY1 1321 aaPredicted RBP10.45□□□□□ -0.74
ECHDC1-208ENST00000436638 ECM2O94769 699 aaPredicted RBP10.45□□□□□ -0.74
ECHDC1-208ENST00000436638 TRPC6Q9Y210 931 aa10.45□□□□□ -0.74
ECHDC1-208ENST00000436638 PKD2Q13563 968 aa10.44□□□□□ -0.74
ECHDC1-208ENST00000436638 ZNF467Q7Z7K2 595 aaPredicted RBP10.44□□□□□ -0.74
ECHDC1-208ENST00000436638 ABCC8Q09428 1581 aa10.41□□□□□ -0.74
ECHDC1-208ENST00000436638 POTEIP0CG38 1075 aa10.41□□□□□ -0.74
ECHDC1-208ENST00000436638 THOC2Q8NI27 1593 aaKnown RBP10.4□□□□□ -0.74
ECHDC1-208ENST00000436638 TIE1P35590 1138 aa10.39□□□□□ -0.75
ECHDC1-208ENST00000436638 BMP2KQ9NSY1 1161 aaPredicted RBP10.39□□□□□ -0.75
ECHDC1-208ENST00000436638 WDR62O43379 1518 aa10.38□□□□□ -0.75
ECHDC1-208ENST00000436638 URB2Q14146 1524 aaKnown RBP10.38□□□□□ -0.75
ECHDC1-208ENST00000436638 CUX2O14529 1486 aa10.38□□□□□ -0.75
ECHDC1-208ENST00000436638 ATMINO43313 823 aaPredicted RBP10.38□□□□□ -0.75
ECHDC1-208ENST00000436638 TMEM106CQ9BVX2 250 aa10.38□□□□□ -0.75
ECHDC1-208ENST00000436638 RTN4Q9NQC3 1192 aaKnown RBP10.38□□□□□ -0.75
ECHDC1-208ENST00000436638 WRNQ14191 1432 aaPredicted RBP eCLIP10.37□□□□□ -0.75
ECHDC1-208ENST00000436638 DNMBPQ6XZF7 1577 aa10.37□□□□□ -0.75
ECHDC1-208ENST00000436638 TOPBP1Q92547 1522 aa10.37□□□□□ -0.75
ECHDC1-208ENST00000436638 TTLL13PA6NNM8 815 aa10.36□□□□□ -0.75
ECHDC1-208ENST00000436638 ASTLQ6HA08 431 aaPredicted RBP10.36□□□□□ -0.75
ECHDC1-208ENST00000436638 RIOK3O14730 519 aaKnown RBP10.35□□□□□ -0.75
ECHDC1-208ENST00000436638 PSEN1P49768 467 aa10.35□□□□□ -0.75
ECHDC1-208ENST00000436638 ATN1P54259 1190 aaPredicted RBP10.35□□□□□ -0.75
ECHDC1-208ENST00000436638 PDAP1Q13442 181 aaKnown RBP10.34□□□□□ -0.75
ECHDC1-208ENST00000436638 RNF25Q96BH1 459 aaPredicted RBP10.34□□□□□ -0.75
ECHDC1-208ENST00000436638 CUX1P39880 1505 aa10.33□□□□□ -0.76
ECHDC1-208ENST00000436638 PELP1Q8IZL8 1130 aaKnown RBP10.33□□□□□ -0.76
ECHDC1-208ENST00000436638 RGL2O15211 777 aa10.32□□□□□ -0.76
ECHDC1-208ENST00000436638 AMER1Q5JTC6 1135 aaPredicted RBP10.31□□□□□ -0.76
ECHDC1-208ENST00000436638 DAXXQ9UER7 740 aaPredicted RBP10.31□□□□□ -0.76
ECHDC1-208ENST00000436638 TRIM35Q9UPQ4 493 aa10.3□□□□□ -0.76
ECHDC1-208ENST00000436638 FGD5Q6ZNL6 1462 aa10.3□□□□□ -0.76
ECHDC1-208ENST00000436638 SOGA1O94964 1423 aa10.29□□□□□ -0.76
ECHDC1-208ENST00000436638 IFT140Q96RY7 1462 aa10.29□□□□□ -0.76
ECHDC1-208ENST00000436638 TOP2BQ02880 1626 aa10.29□□□□□ -0.76
ECHDC1-208ENST00000436638 SYNJ1O43426 1573 aa10.28□□□□□ -0.76
ECHDC1-208ENST00000436638 VGFO15240 615 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms