RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 TSPY4P0CV99 314 aa16.06■□□□□ 0.16
CCDC88A-207ENST00000436346 TSPY10P0CW01 314 aa16.06■□□□□ 0.16
CCDC88A-207ENST00000436346 NACADO15069 1562 aa16.06■□□□□ 0.16
CCDC88A-207ENST00000436346 DDX10Q13206 875 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-207ENST00000436346 KCNH8Q96L42 1107 aa16.04■□□□□ 0.16
CCDC88A-207ENST00000436346 EIF4G1Q04637 1599 aaKnown RBP16.03■□□□□ 0.16
CCDC88A-207ENST00000436346 CCDC136Q96JN2 1154 aa16.02■□□□□ 0.15
CCDC88A-207ENST00000436346 CLIP1P30622 1438 aa16.02■□□□□ 0.15
CCDC88A-207ENST00000436346 DCAF1Q9Y4B6 1507 aa16.01■□□□□ 0.15
CCDC88A-207ENST00000436346 EIF5BO60841 1220 aaKnown RBP15.99■□□□□ 0.15
CCDC88A-207ENST00000436346 ACIN1Q9UKV3 1341 aaKnown RBP15.98■□□□□ 0.15
CCDC88A-207ENST00000436346 NBR1Q14596 966 aa15.98■□□□□ 0.15
CCDC88A-207ENST00000436346 MRS2Q9HD23 443 aa15.96■□□□□ 0.15
CCDC88A-207ENST00000436346 RSF1Q96T23 1441 aaPredicted RBP15.96■□□□□ 0.15
CCDC88A-207ENST00000436346 RRP7BPQ9NSQ0 103 aa15.95■□□□□ 0.14
CCDC88A-207ENST00000436346 NPHP1O15259 732 aa15.95■□□□□ 0.14
CCDC88A-207ENST00000436346 PPM1GO15355 546 aaPredicted RBP15.92■□□□□ 0.14
CCDC88A-207ENST00000436346 TULP1O00294 542 aaPredicted RBP15.91■□□□□ 0.14
CCDC88A-207ENST00000436346 GOLGA3Q08378 1498 aa15.9■□□□□ 0.14
CCDC88A-207ENST00000436346 PRDM2Q13029 1718 aa15.88■□□□□ 0.13
CCDC88A-207ENST00000436346 HIRIP3Q9BW71 556 aaPredicted RBP15.88■□□□□ 0.13
CCDC88A-207ENST00000436346 LMOD2Q6P5Q4 547 aa15.87■□□□□ 0.13
CCDC88A-207ENST00000436346 IRX6P78412 446 aaPredicted RBP15.86■□□□□ 0.13
CCDC88A-207ENST00000436346 FTSJ3Q8IY81 847 aaKnown RBP15.86■□□□□ 0.13
CCDC88A-207ENST00000436346 CASC1Q6TDU7 716 aa15.85■□□□□ 0.13
CCDC88A-207ENST00000436346 RGL3Q3MIN7 710 aa15.84■□□□□ 0.13
CCDC88A-207ENST00000436346 PLEKHD1A6NEE1 506 aa15.84■□□□□ 0.13
CCDC88A-207ENST00000436346 KNSTRNQ9Y448 316 aa15.82■□□□□ 0.12
CCDC88A-207ENST00000436346 CFAP53Q96M91 514 aa15.82■□□□□ 0.12
CCDC88A-207ENST00000436346 TPRNQ4KMQ1 711 aa15.81■□□□□ 0.12
CCDC88A-207ENST00000436346 ZRSR1Q15695 479 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-207ENST00000436346 EIF4G2P78344 907 aaKnown RBP eCLIP15.8■□□□□ 0.12
CCDC88A-207ENST00000436346 BECN1Q14457 450 aa15.8■□□□□ 0.12
CCDC88A-207ENST00000436346 LAS1LQ9Y4W2 734 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-207ENST00000436346 NCLP19338 710 aaKnown RBP15.8■□□□□ 0.12
CCDC88A-207ENST00000436346 KIF27Q86VH2 1401 aa15.79■□□□□ 0.12
CCDC88A-207ENST00000436346 CEP162Q5TB80 1403 aa15.79■□□□□ 0.12
CCDC88A-207ENST00000436346 CFDP1Q9UEE9 299 aaPredicted RBP15.77■□□□□ 0.12
CCDC88A-207ENST00000436346 TAOK2Q9UL54 1235 aa15.77■□□□□ 0.12
CCDC88A-207ENST00000436346 POGKQ9P215 609 aa15.77■□□□□ 0.11
CCDC88A-207ENST00000436346 BAZ1AQ9NRL2 1556 aaPredicted RBP15.76■□□□□ 0.11
CCDC88A-207ENST00000436346 GLIPR1L2Q4G1C9 344 aa15.76■□□□□ 0.11
CCDC88A-207ENST00000436346 TRHP20396 242 aaPredicted RBP15.75■□□□□ 0.11
CCDC88A-207ENST00000436346 CDCA8Q53HL2 280 aa15.74■□□□□ 0.11
CCDC88A-207ENST00000436346 SENP3-EIF4A1A0A087X0R7 540 aa15.74■□□□□ 0.11
CCDC88A-207ENST00000436346 TNNT2P45379 298 aaPredicted RBP15.74■□□□□ 0.11
CCDC88A-207ENST00000436346 KANK1Q14678 1352 aa15.73■□□□□ 0.11
CCDC88A-207ENST00000436346 GOLGA2Q08379 1002 aa15.73■□□□□ 0.11
CCDC88A-207ENST00000436346 WRNQ14191 1432 aaPredicted RBP eCLIP15.73■□□□□ 0.11
CCDC88A-207ENST00000436346 MAPK8IP3Q9UPT6 1336 aa15.72■□□□□ 0.11
CCDC88A-207ENST00000436346 CEP164Q9UPV0 1460 aa15.72■□□□□ 0.11
CCDC88A-207ENST00000436346 GOLGA6L22H0YM25 854 aa15.72■□□□□ 0.11
CCDC88A-207ENST00000436346 OS9Q13438 667 aaPredicted RBP15.7■□□□□ 0.1
CCDC88A-207ENST00000436346 EEA1Q15075 1411 aa15.69■□□□□ 0.1
CCDC88A-207ENST00000436346 DDRGK1Q96HY6 314 aa15.68■□□□□ 0.1
CCDC88A-207ENST00000436346 NEUROD2Q15784 382 aa15.68■□□□□ 0.1
CCDC88A-207ENST00000436346 CARD11Q9BXL7 1154 aa15.67■□□□□ 0.1
CCDC88A-207ENST00000436346 WIZO95785 1651 aa15.66■□□□□ 0.1
CCDC88A-207ENST00000436346 TRIM44Q96DX7 344 aaPredicted RBP15.66■□□□□ 0.1
CCDC88A-207ENST00000436346 CCNB3Q8WWL7 1395 aa15.65■□□□□ 0.1
CCDC88A-207ENST00000436346 PTMAP06454 111 aaKnown RBP15.65■□□□□ 0.1
CCDC88A-207ENST00000436346 MYO15BQ96JP2 1530 aa15.64■□□□□ 0.09
CCDC88A-207ENST00000436346 CLSTN1O94985 981 aa15.64■□□□□ 0.09
CCDC88A-207ENST00000436346 FGD1P98174 961 aa15.64■□□□□ 0.09
CCDC88A-207ENST00000436346 MLECQ14165 292 aa15.64■□□□□ 0.09
CCDC88A-207ENST00000436346 NAP1L2Q9ULW6 460 aaPredicted RBP15.64■□□□□ 0.09
CCDC88A-207ENST00000436346 ABCC8Q09428 1581 aa15.62■□□□□ 0.09
CCDC88A-207ENST00000436346 SOX12O15370 315 aa15.62■□□□□ 0.09
CCDC88A-207ENST00000436346 CC2D1BQ5T0F9 858 aaKnown RBP15.61■□□□□ 0.09
CCDC88A-207ENST00000436346 SMARCA2P51531 1590 aa15.61■□□□□ 0.09
CCDC88A-207ENST00000436346 FHAD1B1AJZ9 1412 aa15.61■□□□□ 0.09
CCDC88A-207ENST00000436346 MIER1Q8N108 512 aa15.6■□□□□ 0.09
CCDC88A-207ENST00000436346 KCNJ4P48050 445 aa15.6■□□□□ 0.09
CCDC88A-207ENST00000436346 NUDCQ9Y266 331 aa15.59■□□□□ 0.09
CCDC88A-207ENST00000436346 U2SURPO15042 1029 aaKnown RBP15.59■□□□□ 0.09
CCDC88A-207ENST00000436346 ARHGAP35Q9NRY4 1499 aa15.59■□□□□ 0.09
CCDC88A-207ENST00000436346 NCBP3Q53F19 620 aaKnown RBP15.57■□□□□ 0.08
CCDC88A-207ENST00000436346 FRAT1Q92837 279 aaPredicted RBP15.57■□□□□ 0.08
CCDC88A-207ENST00000436346 ISY1Q9ULR0 285 aaKnown RBP15.56■□□□□ 0.08
CCDC88A-207ENST00000436346 DNTTIP2Q5QJE6 756 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-207ENST00000436346 SRPK2P78362 688 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-207ENST00000436346 SAFB2Q14151 953 aaKnown RBP eCLIP15.54■□□□□ 0.08
CCDC88A-207ENST00000436346 CUX2O14529 1486 aa15.54■□□□□ 0.08
CCDC88A-207ENST00000436346 ANP32EQ9BTT0 268 aa15.54■□□□□ 0.08
CCDC88A-207ENST00000436346 PNNQ9H307 717 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-207ENST00000436346 GOLGA6L6A8MZA4 724 aa15.53■□□□□ 0.08
CCDC88A-207ENST00000436346 RGS3P49796 1198 aa15.51■□□□□ 0.07
CCDC88A-207ENST00000436346 CHMP4BQ9H444 224 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-207ENST00000436346 HSP90AB1P08238 724 aaKnown RBP15.5■□□□□ 0.07
CCDC88A-207ENST00000436346 HDGFP51858 240 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-207ENST00000436346 PAK3O75914 559 aaPredicted RBP15.49■□□□□ 0.07
CCDC88A-207ENST00000436346 DCAF11Q8TEB1 546 aa15.47■□□□□ 0.07
CCDC88A-207ENST00000436346 GNL2Q13823 731 aaKnown RBP15.46■□□□□ 0.06
CCDC88A-207ENST00000436346 PLCB2Q00722 1185 aa15.45■□□□□ 0.06
CCDC88A-207ENST00000436346 CFAP65Q6ZU64 1925 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-207ENST00000436346 STK26Q9P289 416 aa15.45■□□□□ 0.06
CCDC88A-207ENST00000436346 RTF1Q92541 710 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-207ENST00000436346 SUPT16HQ9Y5B9 1047 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-207ENST00000436346 ZNF330Q9Y3S2 320 aaPredicted RBP15.44■□□□□ 0.06
CCDC88A-207ENST00000436346 TMF1P82094 1093 aa15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms