RNA–Protein interactions for RNA: ENST00000429662.6

GABPB1-205, Transcript of GA binding protein transcription factor subunit beta 1, humanhuman

TSL 1 (best) BASIC

Gene GABPB1, Length 1,392 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GABPB1-205ENST00000429662 RAD54L2Q9Y4B4 1467 aa13.99□□□□□ -0.17
GABPB1-205ENST00000429662 WDR97A6NE52 1622 aa13.99□□□□□ -0.17
GABPB1-205ENST00000429662 ERCC6L2Q5T890 1561 aa13.98□□□□□ -0.17
GABPB1-205ENST00000429662 ILDR1Q86SU0 546 aaPredicted RBP13.98□□□□□ -0.17
GABPB1-205ENST00000429662 FBLN2P98095 1184 aa13.96□□□□□ -0.17
GABPB1-205ENST00000429662 PCGF6Q9BYE7 350 aa13.96□□□□□ -0.17
GABPB1-205ENST00000429662 SPINK5Q9NQ38 1064 aaPredicted RBP13.96□□□□□ -0.18
GABPB1-205ENST00000429662 MAGI1Q96QZ7 1491 aaPredicted RBP13.95□□□□□ -0.18
GABPB1-205ENST00000429662 TDRD9Q8NDG6 1382 aaKnown RBP13.94□□□□□ -0.18
GABPB1-205ENST00000429662 SLC4A2P04920 1241 aa13.92□□□□□ -0.18
GABPB1-205ENST00000429662 SYNJ2O15056 1496 aa13.91□□□□□ -0.18
GABPB1-205ENST00000429662 PBRM1Q86U86 1689 aa13.89□□□□□ -0.19
GABPB1-205ENST00000429662 LOC105371045A0A1W2PR82 267 aa13.89□□□□□ -0.19
GABPB1-205ENST00000429662 CAPN15O75808 1086 aa13.88□□□□□ -0.19
GABPB1-205ENST00000429662 TRIM26Q12899 539 aaPredicted RBP13.88□□□□□ -0.19
GABPB1-205ENST00000429662 DSG3P32926 999 aa13.87□□□□□ -0.19
GABPB1-205ENST00000429662 SOGA1O94964 1423 aa13.86□□□□□ -0.19
GABPB1-205ENST00000429662 GRIN2BQ13224 1484 aa13.86□□□□□ -0.19
GABPB1-205ENST00000429662 FGD5Q6ZNL6 1462 aa13.86□□□□□ -0.19
GABPB1-205ENST00000429662 SHROOM2Q13796 1616 aa13.85□□□□□ -0.19
GABPB1-205ENST00000429662 KDM4FA0A1W2PPD8 638 aa13.83□□□□□ -0.19
GABPB1-205ENST00000429662 CEP170Q5SW79 1584 aa13.83□□□□□ -0.2
GABPB1-205ENST00000429662 ABCA5Q8WWZ7 1642 aa13.82□□□□□ -0.2
GABPB1-205ENST00000429662 CUX1P39880 1505 aa13.82□□□□□ -0.2
GABPB1-205ENST00000429662 CHMP7Q8WUX9 453 aaPredicted RBP13.8□□□□□ -0.2
GABPB1-205ENST00000429662 ZEB1P37275 1124 aaPredicted RBP13.77□□□□□ -0.21
GABPB1-205ENST00000429662 NUP160Q12769 1436 aa13.76□□□□□ -0.21
GABPB1-205ENST00000429662 DIP2BQ9P265 1576 aa13.75□□□□□ -0.21
GABPB1-205ENST00000429662 GRIN2AQ12879 1464 aa13.73□□□□□ -0.21
GABPB1-205ENST00000429662 ABCC10Q5T3U5 1492 aa13.72□□□□□ -0.21
GABPB1-205ENST00000429662 ADAMTS12P58397 1594 aa13.71□□□□□ -0.21
GABPB1-205ENST00000429662 KDM6BO15054 1643 aa13.7□□□□□ -0.22
GABPB1-205ENST00000429662 MAPKBP1O60336 1514 aa13.7□□□□□ -0.22
GABPB1-205ENST00000429662 ABCA10Q8WWZ4 1543 aa13.69□□□□□ -0.22
GABPB1-205ENST00000429662 HECW2Q9P2P5 1572 aa13.65□□□□□ -0.22
GABPB1-205ENST00000429662 ADCY10Q96PN6 1610 aa13.65□□□□□ -0.22
GABPB1-205ENST00000429662 PPRC1Q5VV67 1664 aaKnown RBP13.62□□□□□ -0.23
GABPB1-205ENST00000429662 TSPOAP1O95153 1857 aa13.61□□□□□ -0.23
GABPB1-205ENST00000429662 ABCB7O75027 752 aa13.59□□□□□ -0.23
GABPB1-205ENST00000429662 APLP2Q06481 763 aa13.59□□□□□ -0.23
GABPB1-205ENST00000429662 ADGRL1O94910 1474 aa13.59□□□□□ -0.23
GABPB1-205ENST00000429662 ZNF219Q9P2Y4 722 aaPredicted RBP13.58□□□□□ -0.23
GABPB1-205ENST00000429662 PPARGC1BQ86YN6 1023 aaKnown RBP13.58□□□□□ -0.24
GABPB1-205ENST00000429662 RUSC2Q8N2Y8 1516 aa13.57□□□□□ -0.24
GABPB1-205ENST00000429662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.57□□□□□ -0.24
GABPB1-205ENST00000429662 FAM69CQ0P6D2 419 aa13.57□□□□□ -0.24
GABPB1-205ENST00000429662 HNRNPUL2Q1KMD3 747 aaKnown RBP13.57□□□□□ -0.24
GABPB1-205ENST00000429662 PRG4Q92954 1404 aaPredicted RBP13.55□□□□□ -0.24
GABPB1-205ENST00000429662 FAM9AQ8IZU1 332 aaPredicted RBP13.55□□□□□ -0.24
GABPB1-205ENST00000429662 FHAD1B1AJZ9 1412 aa13.52□□□□□ -0.25
GABPB1-205ENST00000429662 SAMD1Q6SPF0 538 aaPredicted RBP13.51□□□□□ -0.25
GABPB1-205ENST00000429662 COL17A1Q9UMD9 1497 aaPredicted RBP13.49□□□□□ -0.25
GABPB1-205ENST00000429662 ERICH3Q5RHP9 1530 aa13.49□□□□□ -0.25
GABPB1-205ENST00000429662 POTEHQ6S545 545 aa13.48□□□□□ -0.25
GABPB1-205ENST00000429662 EEA1Q15075 1411 aa13.47□□□□□ -0.25
GABPB1-205ENST00000429662 BIVM-ERCC5R4GMW8 1640 aa13.46□□□□□ -0.25
GABPB1-205ENST00000429662 GLI2P10070 1586 aa13.44□□□□□ -0.26
GABPB1-205ENST00000429662 JPH4Q96JJ6 628 aa13.42□□□□□ -0.26
GABPB1-205ENST00000429662 TOP2BQ02880 1626 aa13.41□□□□□ -0.26
GABPB1-205ENST00000429662 WRNQ14191 1432 aaPredicted RBP eCLIP13.41□□□□□ -0.26
GABPB1-205ENST00000429662 FBXO41Q8TF61 875 aa13.4□□□□□ -0.26
GABPB1-205ENST00000429662 MAP3K4Q9Y6R4 1608 aa13.39□□□□□ -0.27
GABPB1-205ENST00000429662 MYCNP04198 464 aaPredicted RBP13.38□□□□□ -0.27
GABPB1-205ENST00000429662 TNIKQ9UKE5 1360 aa13.36□□□□□ -0.27
GABPB1-205ENST00000429662 CUL7Q14999 1698 aa13.34□□□□□ -0.27
GABPB1-205ENST00000429662 ABCC2Q92887 1545 aa13.33□□□□□ -0.28
GABPB1-205ENST00000429662 ASXL2Q76L83 1435 aa13.31□□□□□ -0.28
GABPB1-205ENST00000429662 NPM1P06748 294 aaKnown RBP eCLIP13.3□□□□□ -0.28
GABPB1-205ENST00000429662 CSRNP3Q8WYN3 585 aa13.3□□□□□ -0.28
GABPB1-205ENST00000429662 KIAA0586Q9BVV6 1533 aa13.3□□□□□ -0.28
GABPB1-205ENST00000429662 EHMT2Q96KQ7 1210 aa13.28□□□□□ -0.28
GABPB1-205ENST00000429662 CEP162Q5TB80 1403 aa13.27□□□□□ -0.28
GABPB1-205ENST00000429662 EPRSP07814 1512 aaKnown RBP13.27□□□□□ -0.28
GABPB1-205ENST00000429662 PLB1Q6P1J6 1458 aa13.27□□□□□ -0.29
GABPB1-205ENST00000429662 SLC4A1APQ9BWU0 796 aaKnown RBP13.26□□□□□ -0.29
GABPB1-205ENST00000429662 KIF21BO75037 1637 aa13.26□□□□□ -0.29
GABPB1-205ENST00000429662 POLA2Q14181 598 aa13.25□□□□□ -0.29
GABPB1-205ENST00000429662 UHRF1BP1LA0JNW5 1464 aa13.25□□□□□ -0.29
GABPB1-205ENST00000429662 GOLGA3Q08378 1498 aa13.25□□□□□ -0.29
GABPB1-205ENST00000429662 LMTK3Q96Q04 1460 aa13.25□□□□□ -0.29
GABPB1-205ENST00000429662 ADAMTSL3P82987 1691 aa13.22□□□□□ -0.29
GABPB1-205ENST00000429662 KDM5BQ9UGL1 1544 aa13.22□□□□□ -0.29
GABPB1-205ENST00000429662 ZCCHC11Q5TAX3 1644 aaKnown RBP13.21□□□□□ -0.29
GABPB1-205ENST00000429662 CCER1Q8TC90 406 aaPredicted RBP13.2□□□□□ -0.3
GABPB1-205ENST00000429662 PTPRGP23470 1445 aa13.2□□□□□ -0.3
GABPB1-205ENST00000429662 ILDR2Q71H61 639 aa13.2□□□□□ -0.3
GABPB1-205ENST00000429662 TEX14Q8IWB6 1497 aa13.19□□□□□ -0.3
GABPB1-205ENST00000429662 FOXD4L1Q9NU39 408 aa13.19□□□□□ -0.3
GABPB1-205ENST00000429662 RBM42Q9BTD8 480 aaKnown RBP13.18□□□□□ -0.3
GABPB1-205ENST00000429662 UBTFP17480 764 aaKnown RBP13.17□□□□□ -0.3
GABPB1-205ENST00000429662 ATF5Q9Y2D1 282 aaPredicted RBP13.16□□□□□ -0.3
GABPB1-205ENST00000429662 DISP1Q96F81 1524 aa13.16□□□□□ -0.3
GABPB1-205ENST00000429662 PCF11O94913 1555 aaKnown RBP13.15□□□□□ -0.3
GABPB1-205ENST00000429662 PTPRMP28827 1452 aa13.15□□□□□ -0.31
GABPB1-205ENST00000429662 UACAQ9BZF9 1416 aa13.13□□□□□ -0.31
GABPB1-205ENST00000429662 CFAP43Q8NDM7 1665 aa13.13□□□□□ -0.31
GABPB1-205ENST00000429662 MAGI3Q5TCQ9 1506 aa13.13□□□□□ -0.31
GABPB1-205ENST00000429662 IGF1RP08069 1367 aa13.12□□□□□ -0.31
GABPB1-205ENST00000429662 SOCS7O14512 581 aa13.12□□□□□ -0.31
GABPB1-205ENST00000429662 IQGAP2Q13576 1575 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms