RNA–Protein interactions for RNA: ENST00000428136.1

LRCH3-204, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 3,205 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-204ENST00000428136 EFCAB5A4FU69 1503 aa11.52□□□□□ -0.57
LRCH3-204ENST00000428136 AQRO60306 1485 aaKnown RBP eCLIP11.52□□□□□ -0.572e-6■■■□□ 18.4
LRCH3-204ENST00000428136 MAPKBP1O60336 1514 aa11.52□□□□□ -0.57
LRCH3-204ENST00000428136 CUL7Q14999 1698 aa11.51□□□□□ -0.57
LRCH3-204ENST00000428136 PCF11O94913 1555 aaKnown RBP11.5□□□□□ -0.57
LRCH3-204ENST00000428136 TOPBP1Q92547 1522 aa11.49□□□□□ -0.57
LRCH3-204ENST00000428136 RAB3GAP2Q9H2M9 1393 aa11.49□□□□□ -0.57
LRCH3-204ENST00000428136 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.49□□□□□ -0.57
LRCH3-204ENST00000428136 FYCO1Q9BQS8 1478 aa11.49□□□□□ -0.57
LRCH3-204ENST00000428136 POLA1P09884 1462 aaPredicted RBP11.48□□□□□ -0.57
LRCH3-204ENST00000428136 SETD5Q9C0A6 1442 aa11.48□□□□□ -0.57
LRCH3-204ENST00000428136 PHLDB1Q86UU1 1377 aa11.48□□□□□ -0.57
LRCH3-204ENST00000428136 WDR97A6NE52 1622 aa11.47□□□□□ -0.57
LRCH3-204ENST00000428136 CTTNBP2Q8WZ74 1663 aa11.47□□□□□ -0.57
LRCH3-204ENST00000428136 CASKIN1Q8WXD9 1431 aa11.47□□□□□ -0.57
LRCH3-204ENST00000428136 YTHDC1Q96MU7 727 aaKnown RBP11.45□□□□□ -0.58
LRCH3-204ENST00000428136 RAD54L2Q9Y4B4 1467 aa11.45□□□□□ -0.58
LRCH3-204ENST00000428136 LAMC3Q9Y6N6 1575 aa11.43□□□□□ -0.58
LRCH3-204ENST00000428136 TIMELESSQ9UNS1 1208 aa11.42□□□□□ -0.58
LRCH3-204ENST00000428136 SAMD9Q5K651 1589 aa11.41□□□□□ -0.58
LRCH3-204ENST00000428136 ABCA5Q8WWZ7 1642 aa11.41□□□□□ -0.58
LRCH3-204ENST00000428136 SNAPC4Q5SXM2 1469 aa11.41□□□□□ -0.58
LRCH3-204ENST00000428136 FHOD3Q2V2M9 1422 aa11.4□□□□□ -0.58
LRCH3-204ENST00000428136 FMN1Q68DA7 1419 aa11.4□□□□□ -0.58
LRCH3-204ENST00000428136 URB2Q14146 1524 aaKnown RBP11.39□□□□□ -0.59
LRCH3-204ENST00000428136 NESP48681 1621 aa11.39□□□□□ -0.59
LRCH3-204ENST00000428136 THOC2Q8NI27 1593 aaKnown RBP11.37□□□□□ -0.59
LRCH3-204ENST00000428136 ITGAEP38570 1179 aa11.37□□□□□ -0.59
LRCH3-204ENST00000428136 FGD6Q6ZV73 1430 aa11.35□□□□□ -0.59
LRCH3-204ENST00000428136 LRRIQ1Q96JM4 1722 aa11.35□□□□□ -0.59
LRCH3-204ENST00000428136 GRIN2BQ13224 1484 aa11.34□□□□□ -0.59
LRCH3-204ENST00000428136 KIF21AQ7Z4S6 1674 aa11.34□□□□□ -0.59
LRCH3-204ENST00000428136 FAM50AQ14320 339 aaKnown RBP11.33□□□□□ -0.6
LRCH3-204ENST00000428136 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
LRCH3-204ENST00000428136 GAPVD1Q14C86 1478 aa11.32□□□□□ -0.6
LRCH3-204ENST00000428136 ARHGEF11O15085 1522 aa11.32□□□□□ -0.6
LRCH3-204ENST00000428136 HFM1A2PYH4 1435 aa11.32□□□□□ -0.6
LRCH3-204ENST00000428136 TARBP1Q13395 1621 aaKnown RBP11.3□□□□□ -0.6
LRCH3-204ENST00000428136 PDS5BQ9NTI5 1447 aa11.3□□□□□ -0.6
LRCH3-204ENST00000428136 PTPN23Q9H3S7 1636 aa11.29□□□□□ -0.6
LRCH3-204ENST00000428136 PPP1R15AO75807 674 aaPredicted RBP11.29□□□□□ -0.6
LRCH3-204ENST00000428136 EHBP1L1Q8N3D4 1523 aa11.29□□□□□ -0.6
LRCH3-204ENST00000428136 SIN3AQ96ST3 1273 aa11.29□□□□□ -0.6
LRCH3-204ENST00000428136 SUPT6HQ7KZ85 1726 aaKnown RBP11.29□□□□□ -0.6
LRCH3-204ENST00000428136 PTPRKQ15262 1439 aa11.28□□□□□ -0.6
LRCH3-204ENST00000428136 UACAQ9BZF9 1416 aa11.28□□□□□ -0.6
LRCH3-204ENST00000428136 MYOM3Q5VTT5 1437 aa11.28□□□□□ -0.6
LRCH3-204ENST00000428136 NCOA2Q15596 1464 aa11.28□□□□□ -0.6
LRCH3-204ENST00000428136 UGGT2Q9NYU1 1516 aa11.27□□□□□ -0.6
LRCH3-204ENST00000428136 CCDC18Q5T9S5 1454 aa11.27□□□□□ -0.61
LRCH3-204ENST00000428136 TDRD9Q8NDG6 1382 aaKnown RBP11.27□□□□□ -0.61
LRCH3-204ENST00000428136 TCOF1Q13428 1488 aaKnown RBP11.26□□□□□ -0.61
LRCH3-204ENST00000428136 MTUS2Q5JR59 1369 aa11.26□□□□□ -0.61
LRCH3-204ENST00000428136 SUPT16HQ9Y5B9 1047 aaKnown RBP11.26□□□□□ -0.61
LRCH3-204ENST00000428136 NAIPQ13075 1403 aa11.26□□□□□ -0.61
LRCH3-204ENST00000428136 ATP1B4Q9UN42 357 aaPredicted RBP11.24□□□□□ -0.61
LRCH3-204ENST00000428136 MAGI3Q5TCQ9 1506 aa11.23□□□□□ -0.61
LRCH3-204ENST00000428136 KDM5BQ9UGL1 1544 aa11.23□□□□□ -0.61
LRCH3-204ENST00000428136 AKNAQ7Z591 1439 aa11.23□□□□□ -0.61
LRCH3-204ENST00000428136 PBRM1Q86U86 1689 aa11.23□□□□□ -0.61
LRCH3-204ENST00000428136 MYT1Q01538 1121 aa11.23□□□□□ -0.61
LRCH3-204ENST00000428136 GCC2Q8IWJ2 1684 aa11.22□□□□□ -0.61
LRCH3-204ENST00000428136 HECW1Q76N89 1606 aa11.22□□□□□ -0.61
LRCH3-204ENST00000428136 CCER2I3L3R5 266 aa11.22□□□□□ -0.61
LRCH3-204ENST00000428136 ADAMTS12P58397 1594 aa11.2□□□□□ -0.62
LRCH3-204ENST00000428136 KCNH8Q96L42 1107 aa11.2□□□□□ -0.62
LRCH3-204ENST00000428136 IQGAP2Q13576 1575 aa11.19□□□□□ -0.62
LRCH3-204ENST00000428136 DDX10Q13206 875 aaKnown RBP11.19□□□□□ -0.62
LRCH3-204ENST00000428136 MIA2Q96PC5 1412 aa11.19□□□□□ -0.62
LRCH3-204ENST00000428136 TONSLQ96HA7 1378 aa11.18□□□□□ -0.62
LRCH3-204ENST00000428136 EPRSP07814 1512 aaKnown RBP11.18□□□□□ -0.62
LRCH3-204ENST00000428136 DENND4BO75064 1496 aaPredicted RBP11.17□□□□□ -0.62
LRCH3-204ENST00000428136 WDR62O43379 1518 aa11.17□□□□□ -0.62
LRCH3-204ENST00000428136 MRC2Q9UBG0 1479 aa11.14□□□□□ -0.63
LRCH3-204ENST00000428136 DNAJC5BQ9UF47 199 aa11.12□□□□□ -0.63
LRCH3-204ENST00000428136 KDM6BO15054 1643 aa11.11□□□□□ -0.63
LRCH3-204ENST00000428136 ANP32CO43423 234 aa11.11□□□□□ -0.63
LRCH3-204ENST00000428136 ROCK1Q13464 1354 aa11.11□□□□□ -0.63
LRCH3-204ENST00000428136 IFT140Q96RY7 1462 aa11.1□□□□□ -0.63
LRCH3-204ENST00000428136 CDK13Q14004 1512 aaKnown RBP11.1□□□□□ -0.63
LRCH3-204ENST00000428136 KIAA0556O60303 1618 aa11.09□□□□□ -0.63
LRCH3-204ENST00000428136 KIAA0586Q9BVV6 1533 aa11.09□□□□□ -0.63
LRCH3-204ENST00000428136 DISP1Q96F81 1524 aa11.09□□□□□ -0.63
LRCH3-204ENST00000428136 DNMT1P26358 1616 aaKnown RBP11.08□□□□□ -0.64
LRCH3-204ENST00000428136 HIRIP3Q9BW71 556 aaPredicted RBP11.07□□□□□ -0.64
LRCH3-204ENST00000428136 TSHZ2Q9NRE2 1034 aa11.07□□□□□ -0.64
LRCH3-204ENST00000428136 DAPK1P53355 1430 aa11.06□□□□□ -0.64
LRCH3-204ENST00000428136 NUP153P49790 1475 aaKnown RBP11.05□□□□□ -0.64
LRCH3-204ENST00000428136 MPHOSPH9Q99550 1183 aa11.05□□□□□ -0.64
LRCH3-204ENST00000428136 RRP7BPQ9NSQ0 103 aa11.05□□□□□ -0.64
LRCH3-204ENST00000428136 RAPGEF6Q8TEU7 1601 aa11.05□□□□□ -0.64
LRCH3-204ENST00000428136 ABCC5O15440 1437 aa11.04□□□□□ -0.64
LRCH3-204ENST00000428136 RPRD2Q5VT52 1461 aaKnown RBP11.04□□□□□ -0.64
LRCH3-204ENST00000428136 ANKRD30BQ9BXX2 1392 aa11.04□□□□□ -0.64
LRCH3-204ENST00000428136 ZNF608Q9ULD9 1512 aaPredicted RBP11.03□□□□□ -0.64
LRCH3-204ENST00000428136 WASHC2AQ641Q2 1341 aa11.03□□□□□ -0.64
LRCH3-204ENST00000428136 GRIN2AQ12879 1464 aa11.02□□□□□ -0.65
LRCH3-204ENST00000428136 HSPA5P11021 654 aaKnown RBP11.02□□□□□ -0.65
LRCH3-204ENST00000428136 ADCY10Q96PN6 1610 aa11.02□□□□□ -0.65
LRCH3-204ENST00000428136 TEX14Q8IWB6 1497 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms