RNA–Protein interactions for RNA: ENST00000426542.6

ARHGEF28-203, Transcript of Rho guanine nucleotide exchange factor 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene ARHGEF28, Length 6,118 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF28-203ENST00000426542 CHMP7Q8WUX9 453 aaPredicted RBP23.79■■□□□ 1.4
ARHGEF28-203ENST00000426542 GLIPR1L2Q4G1C9 344 aa23.78■■□□□ 1.4
ARHGEF28-203ENST00000426542 RRP7BPQ9NSQ0 103 aa23.76■■□□□ 1.39
ARHGEF28-203ENST00000426542 EIF4G2P78344 907 aaKnown RBP eCLIP23.75■■□□□ 1.39
ARHGEF28-203ENST00000426542 MIER1Q8N108 512 aa23.75■■□□□ 1.39
ARHGEF28-203ENST00000426542 PPP1R15AO75807 674 aaPredicted RBP23.73■■□□□ 1.39
ARHGEF28-203ENST00000426542 CDK11BP21127 795 aaKnown RBP23.72■■□□□ 1.39
ARHGEF28-203ENST00000426542 KCNH8Q96L42 1107 aa23.68■■□□□ 1.38
ARHGEF28-203ENST00000426542 CLIP1P30622 1438 aa23.65■■□□□ 1.38
ARHGEF28-203ENST00000426542 BECN1Q14457 450 aa23.64■■□□□ 1.37
ARHGEF28-203ENST00000426542 NCLP19338 710 aaKnown RBP23.63■■□□□ 1.37
ARHGEF28-203ENST00000426542 RGL3Q3MIN7 710 aa23.62■■□□□ 1.37
ARHGEF28-203ENST00000426542 DDRGK1Q96HY6 314 aa23.62■■□□□ 1.37
ARHGEF28-203ENST00000426542 SENP3-EIF4A1A0A087X0R7 540 aa23.6■■□□□ 1.37
ARHGEF28-203ENST00000426542 CFAP53Q96M91 514 aa23.56■■□□□ 1.36
ARHGEF28-203ENST00000426542 PLEKHD1A6NEE1 506 aa23.54■■□□□ 1.36
ARHGEF28-203ENST00000426542 PPM1GO15355 546 aaPredicted RBP23.53■■□□□ 1.36
ARHGEF28-203ENST00000426542 HAP1P54257 671 aaPredicted RBP23.53■■□□□ 1.36
ARHGEF28-203ENST00000426542 RSF1Q96T23 1441 aaPredicted RBP23.53■■□□□ 1.36
ARHGEF28-203ENST00000426542 TRIM44Q96DX7 344 aaPredicted RBP23.53■■□□□ 1.36
ARHGEF28-203ENST00000426542 GOLGA6L22H0YM25 854 aa23.52■■□□□ 1.36
ARHGEF28-203ENST00000426542 ZCCHC6Q5VYS8 1495 aaKnown RBP23.52■■□□□ 1.36
ARHGEF28-203ENST00000426542 KNSTRNQ9Y448 316 aa23.5■■□□□ 1.35
ARHGEF28-203ENST00000426542 ARID4BQ4LE39 1312 aaPredicted RBP23.48■■□□□ 1.35
ARHGEF28-203ENST00000426542 TPRNQ4KMQ1 711 aa23.47■■□□□ 1.35
ARHGEF28-203ENST00000426542 FTSJ3Q8IY81 847 aaKnown RBP23.47■■□□□ 1.35
ARHGEF28-203ENST00000426542 CASC1Q6TDU7 716 aa23.47■■□□□ 1.35
ARHGEF28-203ENST00000426542 CDCA8Q53HL2 280 aa23.45■■□□□ 1.34
ARHGEF28-203ENST00000426542 LAS1LQ9Y4W2 734 aaKnown RBP23.45■■□□□ 1.34
ARHGEF28-203ENST00000426542 ANP32EQ9BTT0 268 aa23.44■■□□□ 1.34
ARHGEF28-203ENST00000426542 ZRSR1Q15695 479 aaKnown RBP23.43■■□□□ 1.34
ARHGEF28-203ENST00000426542 CARD11Q9BXL7 1154 aa23.43■■□□□ 1.34
ARHGEF28-203ENST00000426542 NEUROD2Q15784 382 aa23.42■■□□□ 1.34
ARHGEF28-203ENST00000426542 GOLGA3Q08378 1498 aa23.41■■□□□ 1.34
ARHGEF28-203ENST00000426542 PTMAP06454 111 aaKnown RBP23.4■■□□□ 1.34
ARHGEF28-203ENST00000426542 CFDP1Q9UEE9 299 aaPredicted RBP23.4■■□□□ 1.34
ARHGEF28-203ENST00000426542 SUPT16HQ9Y5B9 1047 aaKnown RBP23.39■■□□□ 1.33
ARHGEF28-203ENST00000426542 MAPK8IP3Q9UPT6 1336 aa23.38■■□□□ 1.33
ARHGEF28-203ENST00000426542 CEP162Q5TB80 1403 aa23.37■■□□□ 1.33
ARHGEF28-203ENST00000426542 TULP1O00294 542 aaPredicted RBP23.36■■□□□ 1.33
ARHGEF28-203ENST00000426542 LMOD2Q6P5Q4 547 aa23.32■■□□□ 1.32
ARHGEF28-203ENST00000426542 POGKQ9P215 609 aa23.31■■□□□ 1.32
ARHGEF28-203ENST00000426542 TNNT2P45379 298 aaPredicted RBP23.31■■□□□ 1.32
ARHGEF28-203ENST00000426542 NUDCQ9Y266 331 aa23.31■■□□□ 1.32
ARHGEF28-203ENST00000426542 TAOK2Q9UL54 1235 aa23.3■■□□□ 1.32
ARHGEF28-203ENST00000426542 FRAT1Q92837 279 aaPredicted RBP23.29■■□□□ 1.32
ARHGEF28-203ENST00000426542 DNTTIP2Q5QJE6 756 aaKnown RBP23.29■■□□□ 1.32
ARHGEF28-203ENST00000426542 RGS3P49796 1198 aa23.27■■□□□ 1.32
ARHGEF28-203ENST00000426542 CC2D1BQ5T0F9 858 aaKnown RBP23.26■■□□□ 1.31
ARHGEF28-203ENST00000426542 EEA1Q15075 1411 aa23.26■■□□□ 1.31
ARHGEF28-203ENST00000426542 NPHP1O15259 732 aa23.23■■□□□ 1.31
ARHGEF28-203ENST00000426542 OS9Q13438 667 aaPredicted RBP23.22■■□□□ 1.31
ARHGEF28-203ENST00000426542 U2SURPO15042 1029 aaKnown RBP23.21■■□□□ 1.31
ARHGEF28-203ENST00000426542 SIN3AQ96ST3 1273 aa23.21■■□□□ 1.31
ARHGEF28-203ENST00000426542 PLCB2Q00722 1185 aa23.19■■□□□ 1.3
ARHGEF28-203ENST00000426542 WRNQ14191 1432 aaPredicted RBP eCLIP23.18■■□□□ 1.3
ARHGEF28-203ENST00000426542 PPP4R2Q9NY27 417 aa23.18■■□□□ 1.3
ARHGEF28-203ENST00000426542 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
ARHGEF28-203ENST00000426542 HSP90AB1P08238 724 aaKnown RBP23.17■■□□□ 1.3
ARHGEF28-203ENST00000426542 KIF27Q86VH2 1401 aa23.17■■□□□ 1.3
ARHGEF28-203ENST00000426542 FGD1P98174 961 aa23.16■■□□□ 1.3
ARHGEF28-203ENST00000426542 RB1CC1Q8TDY2 1594 aa23.14■■□□□ 1.3
ARHGEF28-203ENST00000426542 CHMP4BQ9H444 224 aaKnown RBP23.14■■□□□ 1.3
ARHGEF28-203ENST00000426542 NAP1L2Q9ULW6 460 aaPredicted RBP23.14■■□□□ 1.29
ARHGEF28-203ENST00000426542 KCNJ4P48050 445 aa23.12■■□□□ 1.29
ARHGEF28-203ENST00000426542 MS4A1P11836 297 aa23.11■■□□□ 1.29
ARHGEF28-203ENST00000426542 PNNQ9H307 717 aaKnown RBP23.11■■□□□ 1.29
ARHGEF28-203ENST00000426542 BAZ1BQ9UIG0 1483 aaKnown RBP23.11■■□□□ 1.29
ARHGEF28-203ENST00000426542 CEP164Q9UPV0 1460 aa23.1■■□□□ 1.29
ARHGEF28-203ENST00000426542 NAP1L5Q96NT1 182 aaPredicted RBP23.1■■□□□ 1.29
ARHGEF28-203ENST00000426542 ERICH6BQ5W0A0 696 aa23.08■■□□□ 1.28
ARHGEF28-203ENST00000426542 TNIKQ9UKE5 1360 aa23.07■■□□□ 1.28
ARHGEF28-203ENST00000426542 TMF1P82094 1093 aa23.07■■□□□ 1.28
ARHGEF28-203ENST00000426542 NOP58Q9Y2X3 529 aaKnown RBP23.07■■□□□ 1.28
ARHGEF28-203ENST00000426542 GOLGA6L6A8MZA4 724 aa23.07■■□□□ 1.28
ARHGEF28-203ENST00000426542 GOLGA2Q08379 1002 aa23.07■■□□□ 1.28
ARHGEF28-203ENST00000426542 CCDC180Q9P1Z9 1646 aa23.07■■□□□ 1.28
ARHGEF28-203ENST00000426542 DCAF11Q8TEB1 546 aa23.06■■□□□ 1.28
ARHGEF28-203ENST00000426542 CCNB3Q8WWL7 1395 aa23.05■■□□□ 1.28
ARHGEF28-203ENST00000426542 SOX12O15370 315 aa23.05■■□□□ 1.28
ARHGEF28-203ENST00000426542 B4GALNT3Q6L9W6 998 aa23.05■■□□□ 1.28
ARHGEF28-203ENST00000426542 RTN4Q9NQC3 1192 aaKnown RBP23.04■■□□□ 1.28
ARHGEF28-203ENST00000426542 ERCC6Q03468 1493 aa23.02■■□□□ 1.28
ARHGEF28-203ENST00000426542 SRPK2P78362 688 aaKnown RBP23.01■■□□□ 1.27
ARHGEF28-203ENST00000426542 KANK1Q14678 1352 aa23.01■■□□□ 1.27
ARHGEF28-203ENST00000426542 HSCBQ8IWL3 235 aa23■■□□□ 1.27
ARHGEF28-203ENST00000426542 EIF4G1Q04637 1599 aaKnown RBP22.98■■□□□ 1.27
ARHGEF28-203ENST00000426542 GOLGA6L4A6NEF3 574 aa22.98■■□□□ 1.27
ARHGEF28-203ENST00000426542 MLECQ14165 292 aa22.98■■□□□ 1.27
ARHGEF28-203ENST00000426542 SAFB2Q14151 953 aaKnown RBP eCLIP22.97■■□□□ 1.27
ARHGEF28-203ENST00000426542 MORC1Q86VD1 984 aa22.97■■□□□ 1.27
ARHGEF28-203ENST00000426542 SPRYD3Q8NCJ5 442 aa22.94■■□□□ 1.26
ARHGEF28-203ENST00000426542 NRDCO43847 1150 aa22.93■■□□□ 1.26
ARHGEF28-203ENST00000426542 MCCP23508 829 aa22.93■■□□□ 1.26
ARHGEF28-203ENST00000426542 HDGFP51858 240 aaKnown RBP22.91■■□□□ 1.26
ARHGEF28-203ENST00000426542 RTF1Q92541 710 aaKnown RBP22.9■■□□□ 1.26
ARHGEF28-203ENST00000426542 FHAD1B1AJZ9 1412 aa22.88■■□□□ 1.25
ARHGEF28-203ENST00000426542 CLSTN1O94985 981 aa22.86■■□□□ 1.25
ARHGEF28-203ENST00000426542 STK26Q9P289 416 aa22.86■■□□□ 1.25
ARHGEF28-203ENST00000426542 APBB1O00213 710 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms