RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CCDC61Q9Y6R9 512 aa17.49■□□□□ 0.39
LINC01040-201ENST00000425048 RASEFQ8IZ41 740 aa17.46■□□□□ 0.39
LINC01040-201ENST00000425048 MS4A3Q96HJ5 214 aa17.44■□□□□ 0.38
LINC01040-201ENST00000425048 KIF12Q96FN5 646 aa17.4■□□□□ 0.38
LINC01040-201ENST00000425048 NUBP1P53384 320 aa17.36■□□□□ 0.37
LINC01040-201ENST00000425048 MAP3K13O43283 966 aa17.3■□□□□ 0.36
LINC01040-201ENST00000425048 ASTLQ6HA08 431 aaPredicted RBP17.3■□□□□ 0.36
LINC01040-201ENST00000425048 ATMINO43313 823 aaPredicted RBP17.28■□□□□ 0.36
LINC01040-201ENST00000425048 PELP1Q8IZL8 1130 aaKnown RBP17.28■□□□□ 0.36
LINC01040-201ENST00000425048 FAM212AQ96EL1 285 aa17.26■□□□□ 0.35
LINC01040-201ENST00000425048 VASPP50552 380 aaPredicted RBP17.21■□□□□ 0.35
LINC01040-201ENST00000425048 SGIP1Q9BQI5 828 aa17.2■□□□□ 0.34
LINC01040-201ENST00000425048 C7P10643 843 aa17.19■□□□□ 0.34
LINC01040-201ENST00000425048 SLC39A7Q92504 469 aa17.19■□□□□ 0.34
LINC01040-201ENST00000425048 KLHL34Q8N239 644 aa17.18■□□□□ 0.34
LINC01040-201ENST00000425048 ATN1P54259 1190 aaPredicted RBP17.16■□□□□ 0.34
LINC01040-201ENST00000425048 DCAF8Q5TAQ9 597 aa17.16■□□□□ 0.34
LINC01040-201ENST00000425048 PCDHB13Q9Y5F0 798 aa17.16■□□□□ 0.34
LINC01040-201ENST00000425048 TIE1P35590 1138 aa17.15■□□□□ 0.34
LINC01040-201ENST00000425048 BMP2KQ9NSY1 1161 aaPredicted RBP17.15■□□□□ 0.34
LINC01040-201ENST00000425048 METRNQ9UJH8 293 aa17.15■□□□□ 0.34
LINC01040-201ENST00000425048 TRPC6Q9Y210 931 aa17.15■□□□□ 0.34
LINC01040-201ENST00000425048 POTEB2H3BUK9 544 aa17.12■□□□□ 0.33
LINC01040-201ENST00000425048 TTLL13PA6NNM8 815 aa17.04■□□□□ 0.32
LINC01040-201ENST00000425048 IFNL1Q8IU54 200 aa17.04■□□□□ 0.32
LINC01040-201ENST00000425048 OTUD5Q96G74 571 aa17.04■□□□□ 0.32
LINC01040-201ENST00000425048 PYGBP11216 843 aa17.01■□□□□ 0.31
LINC01040-201ENST00000425048 GSE1Q14687 1217 aa17■□□□□ 0.31
LINC01040-201ENST00000425048 TRIM35Q9UPQ4 493 aa16.94■□□□□ 0.3
LINC01040-201ENST00000425048 MAMSTRQ6ZN01 415 aa16.92■□□□□ 0.3
LINC01040-201ENST00000425048 IFNLR1Q8IU57 520 aaPredicted RBP16.92■□□□□ 0.3
LINC01040-201ENST00000425048 TMEM106CQ9BVX2 250 aa16.92■□□□□ 0.3
LINC01040-201ENST00000425048 SEC24BO95487 1268 aa16.9■□□□□ 0.3
LINC01040-201ENST00000425048 POTEJP0CG39 1038 aa16.9■□□□□ 0.3
LINC01040-201ENST00000425048 POTEFA5A3E0 1075 aa16.89■□□□□ 0.29
LINC01040-201ENST00000425048 IER5LQ5T953 404 aa16.89■□□□□ 0.29
LINC01040-201ENST00000425048 SPOCK2Q92563 424 aa16.89■□□□□ 0.29
LINC01040-201ENST00000425048 PCDHB8Q9UN66 801 aa16.86■□□□□ 0.29
LINC01040-201ENST00000425048 CHRM1P11229 460 aaPredicted RBP16.84■□□□□ 0.29
LINC01040-201ENST00000425048 COLQQ9Y215 455 aaPredicted RBP16.84■□□□□ 0.29
LINC01040-201ENST00000425048 SCUBE2Q9NQ36 999 aa16.81■□□□□ 0.28
LINC01040-201ENST00000425048 ZNF467Q7Z7K2 595 aaPredicted RBP16.79■□□□□ 0.28
LINC01040-201ENST00000425048 CIZ1Q9ULV3 898 aaPredicted RBP16.77■□□□□ 0.28
LINC01040-201ENST00000425048 PLCG2P16885 1265 aa16.71■□□□□ 0.27
LINC01040-201ENST00000425048 IRX5P78411 483 aaPredicted RBP16.67■□□□□ 0.26
LINC01040-201ENST00000425048 OCEL1Q9H607 264 aa16.65■□□□□ 0.26
LINC01040-201ENST00000425048 PSEN1P49768 467 aa16.63■□□□□ 0.25
LINC01040-201ENST00000425048 GOLGA2Q08379 1002 aa16.61■□□□□ 0.25
LINC01040-201ENST00000425048 PDAP1Q13442 181 aaKnown RBP16.58■□□□□ 0.24
LINC01040-201ENST00000425048 MKRN3Q13064 507 aaKnown RBP16.57■□□□□ 0.24
LINC01040-201ENST00000425048 TRIM41Q8WV44 630 aa16.57■□□□□ 0.24
LINC01040-201ENST00000425048 FAM163AQ96GL9 167 aaPredicted RBP16.53■□□□□ 0.24
LINC01040-201ENST00000425048 POTEMA6NI47 508 aa16.51■□□□□ 0.23
LINC01040-201ENST00000425048 SLAIN1Q8ND83 568 aa16.49■□□□□ 0.23
LINC01040-201ENST00000425048 POTEGQ6S5H5 508 aa16.48■□□□□ 0.23
LINC01040-201ENST00000425048 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.45■□□□□ 0.22
LINC01040-201ENST00000425048 PDCD7Q8N8D1 485 aaKnown RBP16.43■□□□□ 0.22
LINC01040-201ENST00000425048 CABP2Q9NPB3 220 aa16.42■□□□□ 0.22
LINC01040-201ENST00000425048 L3MBTL3Q96JM7 780 aaPredicted RBP16.41■□□□□ 0.22
LINC01040-201ENST00000425048 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.4■□□□□ 0.22
LINC01040-201ENST00000425048 LCE2DQ5TA82 110 aaPredicted RBP16.38■□□□□ 0.21
LINC01040-201ENST00000425048 ILDR1Q86SU0 546 aaPredicted RBP16.34■□□□□ 0.21
LINC01040-201ENST00000425048 RIOK3O14730 519 aaKnown RBP16.31■□□□□ 0.2
LINC01040-201ENST00000425048 C3orf67Q6ZVT6 689 aa16.31■□□□□ 0.2
LINC01040-201ENST00000425048 PCDH10Q9P2E7 1040 aa16.31■□□□□ 0.2
LINC01040-201ENST00000425048 DPY19L2Q6NUT2 758 aa16.26■□□□□ 0.19
LINC01040-201ENST00000425048 PLSCR2Q9NRY7 297 aa16.26■□□□□ 0.19
LINC01040-201ENST00000425048 SNPHO15079 494 aa16.25■□□□□ 0.19
LINC01040-201ENST00000425048 RNF25Q96BH1 459 aaPredicted RBP16.25■□□□□ 0.19
LINC01040-201ENST00000425048 VGFO15240 615 aaPredicted RBP16.24■□□□□ 0.19
LINC01040-201ENST00000425048 EFCAB3Q8N7B9 438 aa16.24■□□□□ 0.19
LINC01040-201ENST00000425048 G3V3G9 751 aa16.23■□□□□ 0.19
LINC01040-201ENST00000425048 ST18O60284 1047 aa16.22■□□□□ 0.19
LINC01040-201ENST00000425048 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.2■□□□□ 0.18
LINC01040-201ENST00000425048 ZFP91Q96JP5 570 aaPredicted RBP16.2■□□□□ 0.18
LINC01040-201ENST00000425048 BOLA1Q9Y3E2 137 aa16.19■□□□□ 0.18
LINC01040-201ENST00000425048 TAOK2Q9UL54 1235 aa16.17■□□□□ 0.18
LINC01040-201ENST00000425048 SOX12O15370 315 aa16.14■□□□□ 0.17
LINC01040-201ENST00000425048 ECM2O94769 699 aaPredicted RBP16.11■□□□□ 0.17
LINC01040-201ENST00000425048 TMEM121BQ9BXQ6 578 aaPredicted RBP16.11■□□□□ 0.17
LINC01040-201ENST00000425048 CDAN1Q8IWY9 1227 aa16.04■□□□□ 0.16
LINC01040-201ENST00000425048 BCL11BQ9C0K0 894 aaPredicted RBP16.03■□□□□ 0.16
LINC01040-201ENST00000425048 PKD2Q13563 968 aa16.02■□□□□ 0.16
LINC01040-201ENST00000425048 PHF8Q9UPP1 1060 aa16.02■□□□□ 0.16
LINC01040-201ENST00000425048 STK24Q9Y6E0 443 aa16■□□□□ 0.15
LINC01040-201ENST00000425048 MS4A4AQ96JQ5 239 aa15.98■□□□□ 0.15
LINC01040-201ENST00000425048 MICALL2Q8IY33 904 aa15.97■□□□□ 0.15
LINC01040-201ENST00000425048 MARVELD3Q96A59 401 aa15.97■□□□□ 0.15
LINC01040-201ENST00000425048 STK25O00506 426 aa15.96■□□□□ 0.15
LINC01040-201ENST00000425048 NLRP6P59044 892 aa15.96■□□□□ 0.15
LINC01040-201ENST00000425048 RGL2O15211 777 aa15.93■□□□□ 0.14
LINC01040-201ENST00000425048 EMP3P54852 163 aa15.88■□□□□ 0.13
LINC01040-201ENST00000425048 FBXO22Q8NEZ5 403 aa15.88■□□□□ 0.13
LINC01040-201ENST00000425048 HOXB3P14651 431 aaPredicted RBP15.87■□□□□ 0.13
LINC01040-201ENST00000425048 DOK7Q18PE1 504 aa15.86■□□□□ 0.13
LINC01040-201ENST00000425048 ZNF710Q8N1W2 664 aa15.86■□□□□ 0.13
LINC01040-201ENST00000425048 MFRPQ9BY79 579 aa15.85■□□□□ 0.13
LINC01040-201ENST00000425048 TMEM92Q6UXU6 159 aa15.83■□□□□ 0.12
LINC01040-201ENST00000425048 FAM205CA6NFA0 338 aa15.79■□□□□ 0.12
LINC01040-201ENST00000425048 RIMBP2O15034 1052 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms