RNA–Protein interactions for RNA: ENST00000424880.2

SEC61A1-202, Transcript of Sec61 translocon alpha 1 subunit, humanhuman

TSL 2 BASIC

Gene SEC61A1, Length 3,238 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A1-202ENST00000424880 CUX1P39880 1505 aa15.94■□□□□ 0.14
SEC61A1-202ENST00000424880 RTN4Q9NQC3 1192 aaKnown RBP15.94■□□□□ 0.14
SEC61A1-202ENST00000424880 SALL2Q9Y467 1007 aaPredicted RBP15.93■□□□□ 0.14
SEC61A1-202ENST00000424880 BIVM-ERCC5R4GMW8 1640 aa15.92■□□□□ 0.14
SEC61A1-202ENST00000424880 KANK4Q5T7N3 995 aaPredicted RBP15.91■□□□□ 0.14
SEC61A1-202ENST00000424880 CLIP1P30622 1438 aa15.91■□□□□ 0.14
SEC61A1-202ENST00000424880 CDK11AQ9UQ88 783 aaPredicted RBP15.91■□□□□ 0.14
SEC61A1-202ENST00000424880 ERCC6Q03468 1493 aa15.91■□□□□ 0.14
SEC61A1-202ENST00000424880 MYT1LQ9UL68 1186 aa15.9■□□□□ 0.14
SEC61A1-202ENST00000424880 PDS5BQ9NTI5 1447 aa15.9■□□□□ 0.14
SEC61A1-202ENST00000424880 SIN3AQ96ST3 1273 aa15.89■□□□□ 0.13
SEC61A1-202ENST00000424880 WDR62O43379 1518 aa15.89■□□□□ 0.13
SEC61A1-202ENST00000424880 GOLGA3Q08378 1498 aa15.87■□□□□ 0.13
SEC61A1-202ENST00000424880 NESP48681 1621 aa15.86■□□□□ 0.13
SEC61A1-202ENST00000424880 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.84■□□□□ 0.13
SEC61A1-202ENST00000424880 FANCIQ9NVI1 1328 aa15.83■□□□□ 0.13
SEC61A1-202ENST00000424880 PAK3O75914 559 aaPredicted RBP15.83■□□□□ 0.12
SEC61A1-202ENST00000424880 CEP164Q9UPV0 1460 aa15.82■□□□□ 0.12
SEC61A1-202ENST00000424880 RAPGEF2Q9Y4G8 1499 aa15.82■□□□□ 0.12
SEC61A1-202ENST00000424880 HNRNPUQ00839 825 aaKnown RBP eCLIP15.82■□□□□ 0.12
SEC61A1-202ENST00000424880 MRC2Q9UBG0 1479 aa15.81■□□□□ 0.12
SEC61A1-202ENST00000424880 KIF21BO75037 1637 aa15.8■□□□□ 0.12
SEC61A1-202ENST00000424880 B4GALNT3Q6L9W6 998 aa15.8■□□□□ 0.12
SEC61A1-202ENST00000424880 VPS8Q8N3P4 1428 aa15.8■□□□□ 0.12
SEC61A1-202ENST00000424880 IL27Q8NEV9 243 aa15.8■□□□□ 0.12
SEC61A1-202ENST00000424880 ANP32CO43423 234 aa15.79■□□□□ 0.12
SEC61A1-202ENST00000424880 FANCD2Q9BXW9 1451 aa15.76■□□□□ 0.11
SEC61A1-202ENST00000424880 PPP1R15AO75807 674 aaPredicted RBP15.75■□□□□ 0.11
SEC61A1-202ENST00000424880 SENP3-EIF4A1A0A087X0R7 540 aa15.74■□□□□ 0.11
SEC61A1-202ENST00000424880 PRXQ9BXM0 1461 aa15.73■□□□□ 0.11
SEC61A1-202ENST00000424880 KIF27Q86VH2 1401 aa15.72■□□□□ 0.11
SEC61A1-202ENST00000424880 FGD5Q6ZNL6 1462 aa15.7■□□□□ 0.1
SEC61A1-202ENST00000424880 ERICH6BQ5W0A0 696 aa15.69■□□□□ 0.1
SEC61A1-202ENST00000424880 NOP58Q9Y2X3 529 aaKnown RBP15.69■□□□□ 0.1
SEC61A1-202ENST00000424880 CNGB1Q14028 1251 aaPredicted RBP15.68■□□□□ 0.1
SEC61A1-202ENST00000424880 WDR97A6NE52 1622 aa15.67■□□□□ 0.1
SEC61A1-202ENST00000424880 RAB3GAP2Q9H2M9 1393 aa15.65■□□□□ 0.1
SEC61A1-202ENST00000424880 IGF1RP08069 1367 aa15.65■□□□□ 0.1
SEC61A1-202ENST00000424880 ERICH3Q5RHP9 1530 aa15.63■□□□□ 0.09
SEC61A1-202ENST00000424880 TOPBP1Q92547 1522 aa15.62■□□□□ 0.09
SEC61A1-202ENST00000424880 DNAJC5Q9H3Z4 198 aa15.62■□□□□ 0.09
SEC61A1-202ENST00000424880 RAD54L2Q9Y4B4 1467 aa15.62■□□□□ 0.09
SEC61A1-202ENST00000424880 CCDC184Q52MB2 194 aa15.61■□□□□ 0.09
SEC61A1-202ENST00000424880 CCER2I3L3R5 266 aa15.61■□□□□ 0.09
SEC61A1-202ENST00000424880 FAM50AQ14320 339 aaKnown RBP15.6■□□□□ 0.09
SEC61A1-202ENST00000424880 DNMBPQ6XZF7 1577 aa15.6■□□□□ 0.09
SEC61A1-202ENST00000424880 FAM9BQ8IZU0 186 aa15.6■□□□□ 0.09
SEC61A1-202ENST00000424880 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
SEC61A1-202ENST00000424880 RTL5Q5HYW3 569 aaPredicted RBP15.59■□□□□ 0.09
SEC61A1-202ENST00000424880 URB2Q14146 1524 aaKnown RBP15.58■□□□□ 0.09
SEC61A1-202ENST00000424880 PPP4R2Q9NY27 417 aa15.58■□□□□ 0.08
SEC61A1-202ENST00000424880 NPM2Q86SE8 214 aaKnown RBP15.57■□□□□ 0.08
SEC61A1-202ENST00000424880 CCNB3Q8WWL7 1395 aa15.57■□□□□ 0.08
SEC61A1-202ENST00000424880 UBE2Q2Q8WVN8 375 aa15.56■□□□□ 0.08
SEC61A1-202ENST00000424880 MAPKBP1O60336 1514 aa15.56■□□□□ 0.08
SEC61A1-202ENST00000424880 EIF5BO60841 1220 aaKnown RBP15.55■□□□□ 0.08
SEC61A1-202ENST00000424880 ATP1B4Q9UN42 357 aaPredicted RBP15.54■□□□□ 0.08
SEC61A1-202ENST00000424880 LAS1LQ9Y4W2 734 aaKnown RBP15.54■□□□□ 0.08
SEC61A1-202ENST00000424880 CARMIL1Q5VZK9 1371 aa15.54■□□□□ 0.08
SEC61A1-202ENST00000424880 ABCA10Q8WWZ4 1543 aa15.52■□□□□ 0.08
SEC61A1-202ENST00000424880 ARAP1Q96P48 1450 aa15.5■□□□□ 0.07
SEC61A1-202ENST00000424880 ZBTB47Q9UFB7 747 aaPredicted RBP15.5■□□□□ 0.07
SEC61A1-202ENST00000424880 IFT140Q96RY7 1462 aa15.49■□□□□ 0.07
SEC61A1-202ENST00000424880 RRBP1Q9P2E9 1410 aaKnown RBP15.48■□□□□ 0.07
SEC61A1-202ENST00000424880 ANP32AP39687 249 aaKnown RBP15.47■□□□□ 0.07
SEC61A1-202ENST00000424880 TDRD9Q8NDG6 1382 aaKnown RBP15.46■□□□□ 0.06
SEC61A1-202ENST00000424880 ARHGAP35Q9NRY4 1499 aa15.45■□□□□ 0.06
SEC61A1-202ENST00000424880 IPO9Q96P70 1041 aaKnown RBP15.45■□□□□ 0.06
SEC61A1-202ENST00000424880 TARBP1Q13395 1621 aaKnown RBP15.44■□□□□ 0.06
SEC61A1-202ENST00000424880 BRPF3Q9ULD4 1205 aa15.43■□□□□ 0.06
SEC61A1-202ENST00000424880 NEFMP07197 916 aa15.42■□□□□ 0.06
SEC61A1-202ENST00000424880 P3H3Q8IVL6 736 aa15.41■□□□□ 0.06
SEC61A1-202ENST00000424880 SETD5Q9C0A6 1442 aa15.41■□□□□ 0.06
SEC61A1-202ENST00000424880 MRS2Q9HD23 443 aa15.39■□□□□ 0.05
SEC61A1-202ENST00000424880 TONSLQ96HA7 1378 aa15.38■□□□□ 0.05
SEC61A1-202ENST00000424880 AKNAQ7Z591 1439 aa15.36■□□□□ 0.05
SEC61A1-202ENST00000424880 ABCA5Q8WWZ7 1642 aa15.35■□□□□ 0.05
SEC61A1-202ENST00000424880 GAPVD1Q14C86 1478 aa15.35■□□□□ 0.05
SEC61A1-202ENST00000424880 EIF4G3O43432 1585 aaKnown RBP15.35■□□□□ 0.05
SEC61A1-202ENST00000424880 WASHC2AQ641Q2 1341 aa15.35■□□□□ 0.05
SEC61A1-202ENST00000424880 TIMELESSQ9UNS1 1208 aa15.35■□□□□ 0.05
SEC61A1-202ENST00000424880 SKAP1Q86WV1 359 aa15.32■□□□□ 0.04
SEC61A1-202ENST00000424880 PHLDB1Q86UU1 1377 aa15.32■□□□□ 0.04
SEC61A1-202ENST00000424880 HSPA5P11021 654 aaKnown RBP15.32■□□□□ 0.04
SEC61A1-202ENST00000424880 CUL7Q14999 1698 aa15.31■□□□□ 0.04
SEC61A1-202ENST00000424880 POLR3GLQ9BT43 218 aa15.31■□□□□ 0.04
SEC61A1-202ENST00000424880 C11orf95C9JLR9 678 aaPredicted RBP15.3■□□□□ 0.04
SEC61A1-202ENST00000424880 AQRO60306 1485 aaKnown RBP eCLIP15.3■□□□□ 0.042e-6■■■■■ 28
SEC61A1-202ENST00000424880 SLC4A3P48751 1232 aa15.29■□□□□ 0.04
SEC61A1-202ENST00000424880 PRKRIP1Q9H875 184 aaPredicted RBP15.25■□□□□ 0.03
SEC61A1-202ENST00000424880 FHOD3Q2V2M9 1422 aa15.25■□□□□ 0.03
SEC61A1-202ENST00000424880 ZNF608Q9ULD9 1512 aaPredicted RBP15.24■□□□□ 0.03
SEC61A1-202ENST00000424880 CHD1O14646 1710 aa15.23■□□□□ 0.03
SEC61A1-202ENST00000424880 PBRM1Q86U86 1689 aa15.22■□□□□ 0.03
SEC61A1-202ENST00000424880 ZBED9Q6R2W3 1325 aa15.21■□□□□ 0.03
SEC61A1-202ENST00000424880 CTTNBP2Q8WZ74 1663 aa15.21■□□□□ 0.03
SEC61A1-202ENST00000424880 FOXD1Q16676 465 aa15.2■□□□□ 0.02
SEC61A1-202ENST00000424880 MAGI1Q96QZ7 1491 aaPredicted RBP15.18■□□□□ 0.02
SEC61A1-202ENST00000424880 PCF11O94913 1555 aaKnown RBP15.17■□□□□ 0.02
SEC61A1-202ENST00000424880 TIAM1Q13009 1591 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms