RNA–Protein interactions for RNA: ENST00000412393.5

LINC00342-201, long intergenic non-protein coding RNA 342, humanhuman

TSL 3 BASIC

Gene LINC00342, Length 654 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00342-201ENST00000412393 MS4A3Q96HJ5 214 aa13.16□□□□□ -0.3
LINC00342-201ENST00000412393 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
LINC00342-201ENST00000412393 METRNQ9UJH8 293 aa13.15□□□□□ -0.3
LINC00342-201ENST00000412393 ATMINO43313 823 aaPredicted RBP13.14□□□□□ -0.31
LINC00342-201ENST00000412393 PLEKHG5O94827 1062 aa13.11□□□□□ -0.31
LINC00342-201ENST00000412393 PCDH10Q9P2E7 1040 aa13.08□□□□□ -0.32
LINC00342-201ENST00000412393 CCDC61Q9Y6R9 512 aa13.08□□□□□ -0.32
LINC00342-201ENST00000412393 POTEMA6NI47 508 aa13.07□□□□□ -0.32
LINC00342-201ENST00000412393 TSPYL2Q9H2G4 693 aaPredicted RBP13.06□□□□□ -0.32
LINC00342-201ENST00000412393 POTEGQ6S5H5 508 aa13.03□□□□□ -0.32
LINC00342-201ENST00000412393 KIF12Q96FN5 646 aa13.02□□□□□ -0.33
LINC00342-201ENST00000412393 SCUBE2Q9NQ36 999 aa13.01□□□□□ -0.33
LINC00342-201ENST00000412393 TIE1P35590 1138 aa12.97□□□□□ -0.33
LINC00342-201ENST00000412393 ATN1P54259 1190 aaPredicted RBP12.97□□□□□ -0.33
LINC00342-201ENST00000412393 POTEJP0CG39 1038 aa12.95□□□□□ -0.34
LINC00342-201ENST00000412393 MIER1Q8N108 512 aa12.95□□□□□ -0.34
LINC00342-201ENST00000412393 BMP2KQ9NSY1 1161 aaPredicted RBP12.93□□□□□ -0.34
LINC00342-201ENST00000412393 SGIP1Q9BQI5 828 aa12.92□□□□□ -0.34
LINC00342-201ENST00000412393 ZBTB47Q9UFB7 747 aaPredicted RBP12.91□□□□□ -0.34
LINC00342-201ENST00000412393 MAP3K13O43283 966 aa12.89□□□□□ -0.35
LINC00342-201ENST00000412393 RASEFQ8IZ41 740 aa12.87□□□□□ -0.35
LINC00342-201ENST00000412393 IER5LQ5T953 404 aa12.85□□□□□ -0.35
LINC00342-201ENST00000412393 PLCD3Q8N3E9 789 aa12.82□□□□□ -0.36
LINC00342-201ENST00000412393 NISCHQ9Y2I1 1504 aa12.82□□□□□ -0.36
LINC00342-201ENST00000412393 POTEFA5A3E0 1075 aa12.81□□□□□ -0.36
LINC00342-201ENST00000412393 TTLL13PA6NNM8 815 aa12.81□□□□□ -0.36
LINC00342-201ENST00000412393 SEC24BO95487 1268 aa12.81□□□□□ -0.36
LINC00342-201ENST00000412393 TRPC6Q9Y210 931 aa12.8□□□□□ -0.36
LINC00342-201ENST00000412393 FAM163AQ96GL9 167 aaPredicted RBP12.79□□□□□ -0.36
LINC00342-201ENST00000412393 LCE2DQ5TA82 110 aaPredicted RBP12.78□□□□□ -0.36
LINC00342-201ENST00000412393 PCDHB13Q9Y5F0 798 aa12.76□□□□□ -0.37
LINC00342-201ENST00000412393 TRIM35Q9UPQ4 493 aa12.73□□□□□ -0.37
LINC00342-201ENST00000412393 COLQQ9Y215 455 aaPredicted RBP12.72□□□□□ -0.37
LINC00342-201ENST00000412393 NUBP1P53384 320 aa12.71□□□□□ -0.37
LINC00342-201ENST00000412393 FAM212AQ96EL1 285 aa12.71□□□□□ -0.37
LINC00342-201ENST00000412393 IFNL1Q8IU54 200 aa12.64□□□□□ -0.39
LINC00342-201ENST00000412393 PLCG2P16885 1265 aa12.61□□□□□ -0.39
LINC00342-201ENST00000412393 TMEM106CQ9BVX2 250 aa12.61□□□□□ -0.39
LINC00342-201ENST00000412393 SLAIN1Q8ND83 568 aa12.58□□□□□ -0.4
LINC00342-201ENST00000412393 CDAN1Q8IWY9 1227 aa12.55□□□□□ -0.4
LINC00342-201ENST00000412393 IRX5P78411 483 aaPredicted RBP12.54□□□□□ -0.4
LINC00342-201ENST00000412393 OCEL1Q9H607 264 aa12.53□□□□□ -0.4
LINC00342-201ENST00000412393 TMEM121BQ9BXQ6 578 aaPredicted RBP12.52□□□□□ -0.41
LINC00342-201ENST00000412393 FBXO3Q9UK99 471 aa12.51□□□□□ -0.41
LINC00342-201ENST00000412393 SNPHO15079 494 aa12.5□□□□□ -0.41
LINC00342-201ENST00000412393 ST18O60284 1047 aa12.5□□□□□ -0.41
LINC00342-201ENST00000412393 DCAF8Q5TAQ9 597 aa12.48□□□□□ -0.41
LINC00342-201ENST00000412393 FKBP8Q14318 412 aa12.47□□□□□ -0.41
LINC00342-201ENST00000412393 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.44□□□□□ -0.42
LINC00342-201ENST00000412393 PYGBP11216 843 aa12.41□□□□□ -0.42
LINC00342-201ENST00000412393 ZNF467Q7Z7K2 595 aaPredicted RBP12.4□□□□□ -0.42
LINC00342-201ENST00000412393 GSE1Q14687 1217 aa12.39□□□□□ -0.43
LINC00342-201ENST00000412393 PCDHB8Q9UN66 801 aa12.35□□□□□ -0.43
LINC00342-201ENST00000412393 L3MBTL3Q96JM7 780 aaPredicted RBP12.34□□□□□ -0.43
LINC00342-201ENST00000412393 CHRM1P11229 460 aaPredicted RBP12.33□□□□□ -0.44
LINC00342-201ENST00000412393 GOLGA2Q08379 1002 aa12.33□□□□□ -0.44
LINC00342-201ENST00000412393 MKRN3Q13064 507 aaKnown RBP12.31□□□□□ -0.44
LINC00342-201ENST00000412393 C3orf67Q6ZVT6 689 aa12.31□□□□□ -0.44
LINC00342-201ENST00000412393 PDCD7Q8N8D1 485 aaKnown RBP12.29□□□□□ -0.44
LINC00342-201ENST00000412393 KLHL34Q8N239 644 aa12.27□□□□□ -0.45
LINC00342-201ENST00000412393 MMRN1Q13201 1228 aa12.25□□□□□ -0.45
LINC00342-201ENST00000412393 SPNS2Q8IVW8 549 aa12.25□□□□□ -0.45
LINC00342-201ENST00000412393 VASPP50552 380 aaPredicted RBP12.24□□□□□ -0.45
LINC00342-201ENST00000412393 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.22□□□□□ -0.45
LINC00342-201ENST00000412393 PSEN1P49768 467 aa12.2□□□□□ -0.46
LINC00342-201ENST00000412393 MARVELD3Q96A59 401 aa12.2□□□□□ -0.46
LINC00342-201ENST00000412393 ILDR1Q86SU0 546 aaPredicted RBP12.19□□□□□ -0.46
LINC00342-201ENST00000412393 EMP3P54852 163 aa12.18□□□□□ -0.46
LINC00342-201ENST00000412393 PDAP1Q13442 181 aaKnown RBP12.17□□□□□ -0.46
LINC00342-201ENST00000412393 G3V3G9 751 aa12.11□□□□□ -0.47
LINC00342-201ENST00000412393 HS3ST6Q96QI5 342 aa12.08□□□□□ -0.48
LINC00342-201ENST00000412393 BOLA1Q9Y3E2 137 aa12.06□□□□□ -0.48
LINC00342-201ENST00000412393 SPOCK2Q92563 424 aa12.05□□□□□ -0.48
LINC00342-201ENST00000412393 FAM205CA6NFA0 338 aa12.04□□□□□ -0.48
LINC00342-201ENST00000412393 KRTAP3-3Q9BYR6 98 aa12.03□□□□□ -0.48
LINC00342-201ENST00000412393 KRTAP3-2Q9BYR7 98 aa12.03□□□□□ -0.48
LINC00342-201ENST00000412393 CABP2Q9NPB3 220 aa12.02□□□□□ -0.49
LINC00342-201ENST00000412393 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
LINC00342-201ENST00000412393 DOK7Q18PE1 504 aa11.99□□□□□ -0.49
LINC00342-201ENST00000412393 CIZ1Q9ULV3 898 aaPredicted RBP11.99□□□□□ -0.49
LINC00342-201ENST00000412393 HOXB1P14653 301 aaPredicted RBP11.98□□□□□ -0.49
LINC00342-201ENST00000412393 DPY19L2Q6NUT2 758 aa11.98□□□□□ -0.49
LINC00342-201ENST00000412393 ZNF710Q8N1W2 664 aa11.98□□□□□ -0.49
LINC00342-201ENST00000412393 POTEB3A0JP26 581 aa11.97□□□□□ -0.49
LINC00342-201ENST00000412393 HOXB3P14651 431 aaPredicted RBP11.97□□□□□ -0.49
LINC00342-201ENST00000412393 POTEBQ6S5H4 581 aa11.97□□□□□ -0.49
LINC00342-201ENST00000412393 RIMBP2O15034 1052 aa11.96□□□□□ -0.49
LINC00342-201ENST00000412393 IFNLR1Q8IU57 520 aaPredicted RBP11.94□□□□□ -0.5
LINC00342-201ENST00000412393 ZSWIM6Q9HCJ5 1215 aa11.9□□□□□ -0.5
LINC00342-201ENST00000412393 ERBB3P21860 1342 aa11.88□□□□□ -0.51
LINC00342-201ENST00000412393 SOX12O15370 315 aa11.83□□□□□ -0.52
LINC00342-201ENST00000412393 EFCAB3Q8N7B9 438 aa11.83□□□□□ -0.52
LINC00342-201ENST00000412393 PTGER2P43116 358 aa11.79□□□□□ -0.52
LINC00342-201ENST00000412393 MICALL2Q8IY33 904 aa11.79□□□□□ -0.52
LINC00342-201ENST00000412393 RNF166Q96A37 237 aaPredicted RBP11.78□□□□□ -0.52
LINC00342-201ENST00000412393 VARS2Q5ST30 1063 aaKnown RBP11.77□□□□□ -0.53
LINC00342-201ENST00000412393 ZNF687Q8N1G0 1237 aa11.77□□□□□ -0.53
LINC00342-201ENST00000412393 MYT1LQ9UL68 1186 aa11.74□□□□□ -0.53
LINC00342-201ENST00000412393 RIOK3O14730 519 aaKnown RBP11.73□□□□□ -0.53
LINC00342-201ENST00000412393 VGFO15240 615 aaPredicted RBP11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms