RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 CTTNBP2Q8WZ74 1663 aa8.4□□□□□ -1.06
CCDC88A-203ENST00000412148 MAPKBP1O60336 1514 aa8.4□□□□□ -1.07
CCDC88A-203ENST00000412148 AQRO60306 1485 aaKnown RBP eCLIP8.4□□□□□ -1.07
CCDC88A-203ENST00000412148 CUL7Q14999 1698 aa8.39□□□□□ -1.07
CCDC88A-203ENST00000412148 HNRNPUL2Q1KMD3 747 aaKnown RBP8.39□□□□□ -1.07
CCDC88A-203ENST00000412148 FOXD1Q16676 465 aa8.39□□□□□ -1.07
CCDC88A-203ENST00000412148 KIF21AQ7Z4S6 1674 aa8.38□□□□□ -1.07
CCDC88A-203ENST00000412148 FHAD1B1AJZ9 1412 aa8.37□□□□□ -1.07
CCDC88A-203ENST00000412148 TIMELESSQ9UNS1 1208 aa8.37□□□□□ -1.07
CCDC88A-203ENST00000412148 LRRC9Q6ZRR7 1453 aa8.37□□□□□ -1.07
CCDC88A-203ENST00000412148 WDR97A6NE52 1622 aa8.36□□□□□ -1.07
CCDC88A-203ENST00000412148 FYCO1Q9BQS8 1478 aa8.35□□□□□ -1.07
CCDC88A-203ENST00000412148 TTBK1Q5TCY1 1321 aaPredicted RBP8.35□□□□□ -1.07
CCDC88A-203ENST00000412148 IGF1RP08069 1367 aa8.34□□□□□ -1.07
CCDC88A-203ENST00000412148 THOC2Q8NI27 1593 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-203ENST00000412148 PCF11O94913 1555 aaKnown RBP8.34□□□□□ -1.07
CCDC88A-203ENST00000412148 AMER1Q5JTC6 1135 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-203ENST00000412148 KANK4Q5T7N3 995 aaPredicted RBP8.34□□□□□ -1.07
CCDC88A-203ENST00000412148 DNMBPQ6XZF7 1577 aa8.34□□□□□ -1.07
CCDC88A-203ENST00000412148 SLC4A1APQ9BWU0 796 aaKnown RBP8.33□□□□□ -1.08
CCDC88A-203ENST00000412148 FGD5Q6ZNL6 1462 aa8.33□□□□□ -1.08
CCDC88A-203ENST00000412148 SETD5Q9C0A6 1442 aa8.32□□□□□ -1.08
CCDC88A-203ENST00000412148 ABCA10Q8WWZ4 1543 aa8.32□□□□□ -1.08
CCDC88A-203ENST00000412148 CADPSQ9ULU8 1353 aa8.31□□□□□ -1.08
CCDC88A-203ENST00000412148 RAB3GAP2Q9H2M9 1393 aa8.31□□□□□ -1.08
CCDC88A-203ENST00000412148 SAMD9Q5K651 1589 aa8.3□□□□□ -1.08
CCDC88A-203ENST00000412148 CASKIN1Q8WXD9 1431 aa8.3□□□□□ -1.08
CCDC88A-203ENST00000412148 CARMIL1Q5VZK9 1371 aa8.29□□□□□ -1.08
CCDC88A-203ENST00000412148 LRRIQ1Q96JM4 1722 aa8.28□□□□□ -1.08
CCDC88A-203ENST00000412148 GCC2Q8IWJ2 1684 aa8.27□□□□□ -1.09
CCDC88A-203ENST00000412148 ZBTB22O15209 634 aa8.27□□□□□ -1.09
CCDC88A-203ENST00000412148 ABCA5Q8WWZ7 1642 aa8.26□□□□□ -1.09
CCDC88A-203ENST00000412148 SUPT16HQ9Y5B9 1047 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-203ENST00000412148 YTHDC1Q96MU7 727 aaKnown RBP8.26□□□□□ -1.09
CCDC88A-203ENST00000412148 SNAPC4Q5SXM2 1469 aa8.26□□□□□ -1.09
CCDC88A-203ENST00000412148 PHLDB1Q86UU1 1377 aa8.25□□□□□ -1.09
CCDC88A-203ENST00000412148 POLR1AO95602 1720 aaPredicted RBP8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 ARHGEF11O15085 1522 aa8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 FMN1Q68DA7 1419 aa8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 SUPT6HQ7KZ85 1726 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 HECW1Q76N89 1606 aa8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 PTPN23Q9H3S7 1636 aa8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 LAMC3Q9Y6N6 1575 aa8.24□□□□□ -1.09
CCDC88A-203ENST00000412148 TOPBP1Q92547 1522 aa8.23□□□□□ -1.09
CCDC88A-203ENST00000412148 FANCD2Q9BXW9 1451 aa8.23□□□□□ -1.09
CCDC88A-203ENST00000412148 AKNAQ7Z591 1439 aa8.23□□□□□ -1.09
CCDC88A-203ENST00000412148 CCER2I3L3R5 266 aa8.23□□□□□ -1.09
CCDC88A-203ENST00000412148 NCBP3Q53F19 620 aaKnown RBP8.23□□□□□ -1.09
CCDC88A-203ENST00000412148 HFM1A2PYH4 1435 aa8.22□□□□□ -1.09
CCDC88A-203ENST00000412148 EHBP1L1Q8N3D4 1523 aa8.22□□□□□ -1.09
CCDC88A-203ENST00000412148 POLA1P09884 1462 aaPredicted RBP8.21□□□□□ -1.09
CCDC88A-203ENST00000412148 FGD6Q6ZV73 1430 aa8.21□□□□□ -1.1
CCDC88A-203ENST00000412148 UACAQ9BZF9 1416 aa8.21□□□□□ -1.1
CCDC88A-203ENST00000412148 GRIN2BQ13224 1484 aa8.2□□□□□ -1.1
CCDC88A-203ENST00000412148 KDM5BQ9UGL1 1544 aa8.2□□□□□ -1.1
CCDC88A-203ENST00000412148 TCOF1Q13428 1488 aaKnown RBP8.2□□□□□ -1.1
CCDC88A-203ENST00000412148 PPP1R15AO75807 674 aaPredicted RBP8.2□□□□□ -1.1
CCDC88A-203ENST00000412148 UGGT2Q9NYU1 1516 aa8.19□□□□□ -1.1
CCDC88A-203ENST00000412148 CCDC18Q5T9S5 1454 aa8.18□□□□□ -1.1
CCDC88A-203ENST00000412148 MYOM3Q5VTT5 1437 aa8.16□□□□□ -1.1
CCDC88A-203ENST00000412148 PBRM1Q86U86 1689 aa8.15□□□□□ -1.1
CCDC88A-203ENST00000412148 TSHZ2Q9NRE2 1034 aa8.15□□□□□ -1.11
CCDC88A-203ENST00000412148 FHOD3Q2V2M9 1422 aa8.15□□□□□ -1.11
CCDC88A-203ENST00000412148 NAIPQ13075 1403 aa8.14□□□□□ -1.11
CCDC88A-203ENST00000412148 TARBP1Q13395 1621 aaKnown RBP8.14□□□□□ -1.11
CCDC88A-203ENST00000412148 NCOA2Q15596 1464 aa8.14□□□□□ -1.11
CCDC88A-203ENST00000412148 RANGAP1P46060 587 aaPredicted RBP8.13□□□□□ -1.11
CCDC88A-203ENST00000412148 MIA2Q96PC5 1412 aa8.12□□□□□ -1.11
CCDC88A-203ENST00000412148 URB2Q14146 1524 aaKnown RBP8.12□□□□□ -1.11
CCDC88A-203ENST00000412148 RAD54L2Q9Y4B4 1467 aa8.12□□□□□ -1.11
CCDC88A-203ENST00000412148 ERICH6BQ5W0A0 696 aa8.11□□□□□ -1.11
CCDC88A-203ENST00000412148 PTPRKQ15262 1439 aa8.11□□□□□ -1.11
CCDC88A-203ENST00000412148 NESP48681 1621 aa8.1□□□□□ -1.11
CCDC88A-203ENST00000412148 GAPVD1Q14C86 1478 aa8.1□□□□□ -1.11
CCDC88A-203ENST00000412148 DNMT1P26358 1616 aaKnown RBP8.09□□□□□ -1.11
CCDC88A-203ENST00000412148 ADAMTS12P58397 1594 aa8.09□□□□□ -1.11
CCDC88A-203ENST00000412148 MAGI3Q5TCQ9 1506 aa8.09□□□□□ -1.11
CCDC88A-203ENST00000412148 IQGAP2Q13576 1575 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 DENND4BO75064 1496 aaPredicted RBP8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 TONSLQ96HA7 1378 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 ANP32EQ9BTT0 268 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 WDR62O43379 1518 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 ADGBQ8N7X0 1667 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 MTUS2Q5JR59 1369 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 ANP32CO43423 234 aa8.08□□□□□ -1.12
CCDC88A-203ENST00000412148 ROCK1Q13464 1354 aa8.07□□□□□ -1.12
CCDC88A-203ENST00000412148 PPP4R3CPQ6ZMV5 832 aa8.07□□□□□ -1.12
CCDC88A-203ENST00000412148 SIN3AQ96ST3 1273 aa8.07□□□□□ -1.12
CCDC88A-203ENST00000412148 FAM50AQ14320 339 aaKnown RBP8.07□□□□□ -1.12
CCDC88A-203ENST00000412148 ADCY10Q96PN6 1610 aa8.07□□□□□ -1.12
CCDC88A-203ENST00000412148 DAXXQ9UER7 740 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-203ENST00000412148 CROCC2H7BZ55 1655 aa8.06□□□□□ -1.12
CCDC88A-203ENST00000412148 DDX10Q13206 875 aaKnown RBP8.06□□□□□ -1.12
CCDC88A-203ENST00000412148 ITSN2Q9NZM3 1697 aa8.06□□□□□ -1.12
CCDC88A-203ENST00000412148 PDS5BQ9NTI5 1447 aa8.05□□□□□ -1.12
CCDC88A-203ENST00000412148 EPRSP07814 1512 aaKnown RBP8.05□□□□□ -1.12
CCDC88A-203ENST00000412148 ITGAEP38570 1179 aa8.04□□□□□ -1.12
CCDC88A-203ENST00000412148 KCNH8Q96L42 1107 aa8.04□□□□□ -1.12
CCDC88A-203ENST00000412148 CNTLNQ9NXG0 1405 aa8.04□□□□□ -1.12
CCDC88A-203ENST00000412148 NEFLP07196 543 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms