RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 PHF12Q96QT6 1004 aa13.57□□□□□ -0.24
HMGB1P13-201ENST00000406019 PAK3O75914 559 aaPredicted RBP13.56□□□□□ -0.24
HMGB1P13-201ENST00000406019 GSE1Q14687 1217 aa13.5□□□□□ -0.25
HMGB1P13-201ENST00000406019 DCAF8Q5TAQ9 597 aa13.5□□□□□ -0.25
HMGB1P13-201ENST00000406019 KIF12Q96FN5 646 aa13.5□□□□□ -0.25
HMGB1P13-201ENST00000406019 GABBR2O75899 941 aa13.49□□□□□ -0.25
HMGB1P13-201ENST00000406019 CHRM1P11229 460 aaPredicted RBP13.44□□□□□ -0.26
HMGB1P13-201ENST00000406019 CLCN6P51797 869 aa13.43□□□□□ -0.26
HMGB1P13-201ENST00000406019 PKD2Q13563 968 aa13.43□□□□□ -0.26
HMGB1P13-201ENST00000406019 MAP3K13O43283 966 aa13.42□□□□□ -0.26
HMGB1P13-201ENST00000406019 GALR2O43603 387 aaPredicted RBP13.42□□□□□ -0.26
HMGB1P13-201ENST00000406019 MS4A3Q96HJ5 214 aa13.42□□□□□ -0.26
HMGB1P13-201ENST00000406019 CIZ1Q9ULV3 898 aaPredicted RBP13.42□□□□□ -0.26
HMGB1P13-201ENST00000406019 PYGBP11216 843 aa13.41□□□□□ -0.26
HMGB1P13-201ENST00000406019 SGIP1Q9BQI5 828 aa13.38□□□□□ -0.27
HMGB1P13-201ENST00000406019 TRIM41Q8WV44 630 aa13.35□□□□□ -0.27
HMGB1P13-201ENST00000406019 IFNL1Q8IU54 200 aa13.34□□□□□ -0.27
HMGB1P13-201ENST00000406019 TRPC6Q9Y210 931 aa13.33□□□□□ -0.28
HMGB1P13-201ENST00000406019 PCDHB13Q9Y5F0 798 aa13.32□□□□□ -0.28
HMGB1P13-201ENST00000406019 RNF25Q96BH1 459 aaPredicted RBP13.31□□□□□ -0.28
HMGB1P13-201ENST00000406019 POTEIP0CG38 1075 aa13.3□□□□□ -0.28
HMGB1P13-201ENST00000406019 PCDHB8Q9UN66 801 aa13.27□□□□□ -0.29
HMGB1P13-201ENST00000406019 ECM2O94769 699 aaPredicted RBP13.22□□□□□ -0.29
HMGB1P13-201ENST00000406019 ZNF467Q7Z7K2 595 aaPredicted RBP13.22□□□□□ -0.29
HMGB1P13-201ENST00000406019 ASTLQ6HA08 431 aaPredicted RBP13.21□□□□□ -0.29
HMGB1P13-201ENST00000406019 BMP2KQ9NSY1 1161 aaPredicted RBP13.21□□□□□ -0.29
HMGB1P13-201ENST00000406019 RGL2O15211 777 aa13.2□□□□□ -0.3
HMGB1P13-201ENST00000406019 TIE1P35590 1138 aa13.2□□□□□ -0.3
HMGB1P13-201ENST00000406019 RTN4Q9NQC3 1192 aaKnown RBP13.2□□□□□ -0.3
HMGB1P13-201ENST00000406019 ATMINO43313 823 aaPredicted RBP13.18□□□□□ -0.3
HMGB1P13-201ENST00000406019 AMER1Q5JTC6 1135 aaPredicted RBP13.17□□□□□ -0.3
HMGB1P13-201ENST00000406019 TTLL13PA6NNM8 815 aa13.16□□□□□ -0.3
HMGB1P13-201ENST00000406019 RIOK3O14730 519 aaKnown RBP13.16□□□□□ -0.3
HMGB1P13-201ENST00000406019 PELP1Q8IZL8 1130 aaKnown RBP13.15□□□□□ -0.3
HMGB1P13-201ENST00000406019 ATN1P54259 1190 aaPredicted RBP13.14□□□□□ -0.31
HMGB1P13-201ENST00000406019 DCBLD2Q96PD2 775 aa13.14□□□□□ -0.31
HMGB1P13-201ENST00000406019 PDAP1Q13442 181 aaKnown RBP13.12□□□□□ -0.31
HMGB1P13-201ENST00000406019 PSEN1P49768 467 aa13.11□□□□□ -0.31
HMGB1P13-201ENST00000406019 TMEM106CQ9BVX2 250 aa13.1□□□□□ -0.31
HMGB1P13-201ENST00000406019 VGFO15240 615 aaPredicted RBP13.07□□□□□ -0.32
HMGB1P13-201ENST00000406019 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.04□□□□□ -0.32
HMGB1P13-201ENST00000406019 ZFP91Q96JP5 570 aaPredicted RBP13.04□□□□□ -0.32
HMGB1P13-201ENST00000406019 TRIM35Q9UPQ4 493 aa13.03□□□□□ -0.32
HMGB1P13-201ENST00000406019 POTEFA5A3E0 1075 aa12.98□□□□□ -0.33
HMGB1P13-201ENST00000406019 SLC39A7Q92504 469 aa12.96□□□□□ -0.33
HMGB1P13-201ENST00000406019 IER5LQ5T953 404 aa12.95□□□□□ -0.34
HMGB1P13-201ENST00000406019 C7P10643 843 aa12.94□□□□□ -0.34
HMGB1P13-201ENST00000406019 ILDR1Q86SU0 546 aaPredicted RBP12.94□□□□□ -0.34
HMGB1P13-201ENST00000406019 BCL11BQ9C0K0 894 aaPredicted RBP12.94□□□□□ -0.34
HMGB1P13-201ENST00000406019 METRNQ9UJH8 293 aa12.94□□□□□ -0.34
HMGB1P13-201ENST00000406019 TAOK2Q9UL54 1235 aa12.94□□□□□ -0.34
HMGB1P13-201ENST00000406019 HS6ST3Q8IZP7 471 aa12.93□□□□□ -0.34
HMGB1P13-201ENST00000406019 CABP2Q9NPB3 220 aa12.93□□□□□ -0.34
HMGB1P13-201ENST00000406019 IRX5P78411 483 aaPredicted RBP12.92□□□□□ -0.34
HMGB1P13-201ENST00000406019 COLQQ9Y215 455 aaPredicted RBP12.91□□□□□ -0.34
HMGB1P13-201ENST00000406019 STK25O00506 426 aa12.89□□□□□ -0.35
HMGB1P13-201ENST00000406019 EFCAB3Q8N7B9 438 aa12.88□□□□□ -0.35
HMGB1P13-201ENST00000406019 DNAJC5Q9H3Z4 198 aa12.88□□□□□ -0.35
HMGB1P13-201ENST00000406019 POTEB2H3BUK9 544 aa12.87□□□□□ -0.35
HMGB1P13-201ENST00000406019 STK24Q9Y6E0 443 aa12.87□□□□□ -0.35
HMGB1P13-201ENST00000406019 PDCD7Q8N8D1 485 aaKnown RBP12.86□□□□□ -0.35
HMGB1P13-201ENST00000406019 POTEJP0CG39 1038 aa12.83□□□□□ -0.36
HMGB1P13-201ENST00000406019 CHGAP10645 457 aaKnown RBP12.83□□□□□ -0.36
HMGB1P13-201ENST00000406019 MKRN3Q13064 507 aaKnown RBP12.82□□□□□ -0.36
HMGB1P13-201ENST00000406019 GOLGA2Q08379 1002 aa12.8□□□□□ -0.36
HMGB1P13-201ENST00000406019 NKX1-1Q15270 411 aaPredicted RBP12.8□□□□□ -0.36
HMGB1P13-201ENST00000406019 FBXO22Q8NEZ5 403 aa12.8□□□□□ -0.36
HMGB1P13-201ENST00000406019 MS4A4AQ96JQ5 239 aa12.8□□□□□ -0.36
HMGB1P13-201ENST00000406019 MFRPQ9BY79 579 aa12.8□□□□□ -0.36
HMGB1P13-201ENST00000406019 OCEL1Q9H607 264 aa12.8□□□□□ -0.36
HMGB1P13-201ENST00000406019 SOX12O15370 315 aa12.79□□□□□ -0.36
HMGB1P13-201ENST00000406019 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.77□□□□□ -0.37
HMGB1P13-201ENST00000406019 PHF8Q9UPP1 1060 aa12.77□□□□□ -0.37
HMGB1P13-201ENST00000406019 PLCG2P16885 1265 aa12.75□□□□□ -0.37
HMGB1P13-201ENST00000406019 SEC24BO95487 1268 aa12.74□□□□□ -0.37
HMGB1P13-201ENST00000406019 LHX8Q68G74 356 aa12.74□□□□□ -0.37
HMGB1P13-201ENST00000406019 DCAF8L2P0C7V8 631 aa12.73□□□□□ -0.37
HMGB1P13-201ENST00000406019 DPY19L2Q6NUT2 758 aa12.73□□□□□ -0.37
HMGB1P13-201ENST00000406019 NLRP6P59044 892 aa12.69□□□□□ -0.38
HMGB1P13-201ENST00000406019 OTUD5Q96G74 571 aa12.65□□□□□ -0.38
HMGB1P13-201ENST00000406019 TMEM121BQ9BXQ6 578 aaPredicted RBP12.64□□□□□ -0.39
HMGB1P13-201ENST00000406019 GTPBP6O43824 516 aaPredicted RBP12.63□□□□□ -0.39
HMGB1P13-201ENST00000406019 BBXQ8WY36 941 aaPredicted RBP12.62□□□□□ -0.39
HMGB1P13-201ENST00000406019 PPP1R37O75864 691 aa12.61□□□□□ -0.39
HMGB1P13-201ENST00000406019 L3MBTL3Q96JM7 780 aaPredicted RBP12.58□□□□□ -0.4
HMGB1P13-201ENST00000406019 BOLA1Q9Y3E2 137 aa12.58□□□□□ -0.4
HMGB1P13-201ENST00000406019 MICALL2Q8IY33 904 aa12.57□□□□□ -0.4
HMGB1P13-201ENST00000406019 MAMSTRQ6ZN01 415 aa12.54□□□□□ -0.4
HMGB1P13-201ENST00000406019 SCUBE2Q9NQ36 999 aa12.5□□□□□ -0.41
HMGB1P13-201ENST00000406019 RYDENQ9NUL5 291 aaKnown RBP12.5□□□□□ -0.41
HMGB1P13-201ENST00000406019 TMEM92Q6UXU6 159 aa12.49□□□□□ -0.41
HMGB1P13-201ENST00000406019 C3orf67Q6ZVT6 689 aa12.44□□□□□ -0.42
HMGB1P13-201ENST00000406019 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.44□□□□□ -0.42
HMGB1P13-201ENST00000406019 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.42□□□□□ -0.42
HMGB1P13-201ENST00000406019 SPRYD3Q8NCJ5 442 aa12.41□□□□□ -0.42
HMGB1P13-201ENST00000406019 G3V3G9 751 aa12.4□□□□□ -0.42
HMGB1P13-201ENST00000406019 KIF3CO14782 793 aa12.4□□□□□ -0.42
HMGB1P13-201ENST00000406019 SLAIN1Q8ND83 568 aa12.4□□□□□ -0.42
HMGB1P13-201ENST00000406019 PAXIP1Q6ZW49 1069 aaPredicted RBP12.38□□□□□ -0.43
HMGB1P13-201ENST00000406019 CADPS2Q86UW7 1296 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms