RNA–Protein interactions for RNA: ENST00000400060.8

PTPRM-203, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

TSL 5 BASIC

Gene PTPRM, Length 5,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-203ENST00000400060 FAM50AQ14320 339 aaKnown RBP13.24□□□□□ -0.29
PTPRM-203ENST00000400060 WRNQ14191 1432 aaPredicted RBP eCLIP13.24□□□□□ -0.29
PTPRM-203ENST00000400060 ANO8Q9HCE9 1232 aaPredicted RBP13.24□□□□□ -0.29
PTPRM-203ENST00000400060 GOLGA3Q08378 1498 aa13.22□□□□□ -0.29
PTPRM-203ENST00000400060 HSP90AA2PQ14568 343 aaPredicted RBP13.21□□□□□ -0.3
PTPRM-203ENST00000400060 IRX6P78412 446 aaPredicted RBP13.18□□□□□ -0.3
PTPRM-203ENST00000400060 PNNQ9H307 717 aaKnown RBP13.18□□□□□ -0.3
PTPRM-203ENST00000400060 PODXL2Q9NZ53 605 aa13.17□□□□□ -0.3
PTPRM-203ENST00000400060 VSIG10Q8N0Z9 540 aa13.17□□□□□ -0.3
PTPRM-203ENST00000400060 LAS1LQ9Y4W2 734 aaKnown RBP13.17□□□□□ -0.3
PTPRM-203ENST00000400060 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.16□□□□□ -0.3
PTPRM-203ENST00000400060 TCERG1O14776 1098 aaKnown RBP13.16□□□□□ -0.3
PTPRM-203ENST00000400060 RB1CC1Q8TDY2 1594 aa13.16□□□□□ -0.3
PTPRM-203ENST00000400060 POLR3GLQ9BT43 218 aa13.15□□□□□ -0.31
PTPRM-203ENST00000400060 NACADO15069 1562 aa13.14□□□□□ -0.31
PTPRM-203ENST00000400060 GSE1Q14687 1217 aa13.13□□□□□ -0.31
PTPRM-203ENST00000400060 MRS2Q9HD23 443 aa13.13□□□□□ -0.31
PTPRM-203ENST00000400060 SALL2Q9Y467 1007 aaPredicted RBP13.13□□□□□ -0.31
PTPRM-203ENST00000400060 CDK11BP21127 795 aaKnown RBP13.13□□□□□ -0.31
PTPRM-203ENST00000400060 CLIP1P30622 1438 aa13.12□□□□□ -0.31
PTPRM-203ENST00000400060 FAM9BQ8IZU0 186 aa13.12□□□□□ -0.31
PTPRM-203ENST00000400060 FAM43AQ8N2R8 423 aa13.09□□□□□ -0.31
PTPRM-203ENST00000400060 PTMSP20962 102 aa13.08□□□□□ -0.31
PTPRM-203ENST00000400060 ZNF326Q5BKZ1 582 aaKnown RBP13.08□□□□□ -0.32
PTPRM-203ENST00000400060 ARID4BQ4LE39 1312 aaPredicted RBP13.07□□□□□ -0.32
PTPRM-203ENST00000400060 B4GALNT3Q6L9W6 998 aa13.07□□□□□ -0.32
PTPRM-203ENST00000400060 CEP164Q9UPV0 1460 aa13.04□□□□□ -0.32
PTPRM-203ENST00000400060 GOLGA6L22H0YM25 854 aa13.04□□□□□ -0.32
PTPRM-203ENST00000400060 RRP9O43818 475 aaKnown RBP13.02□□□□□ -0.33
PTPRM-203ENST00000400060 CANXP27824 592 aaKnown RBP13.01□□□□□ -0.33
PTPRM-203ENST00000400060 MAP7D2Q96T17 732 aa13.01□□□□□ -0.33
PTPRM-203ENST00000400060 EIF4G2P78344 907 aaKnown RBP eCLIP13□□□□□ -0.33
PTPRM-203ENST00000400060 MS4A1P11836 297 aa12.99□□□□□ -0.33
PTPRM-203ENST00000400060 MSNP26038 577 aaKnown RBP12.99□□□□□ -0.33
PTPRM-203ENST00000400060 TMC1Q8TDI8 760 aa12.98□□□□□ -0.33
PTPRM-203ENST00000400060 P3H3Q8IVL6 736 aa12.97□□□□□ -0.33
PTPRM-203ENST00000400060 GOLGA6L3A6NEY3 463 aa12.97□□□□□ -0.33
PTPRM-203ENST00000400060 MTERF4Q7Z6M4 381 aaKnown RBP12.97□□□□□ -0.33
PTPRM-203ENST00000400060 BAZ1AQ9NRL2 1556 aaPredicted RBP12.96□□□□□ -0.33
PTPRM-203ENST00000400060 TPM2P07951 284 aa12.96□□□□□ -0.34
PTPRM-203ENST00000400060 VPS8Q8N3P4 1428 aa12.95□□□□□ -0.34
PTPRM-203ENST00000400060 CNGB1Q14028 1251 aaPredicted RBP12.95□□□□□ -0.34
PTPRM-203ENST00000400060 MSH5O43196 834 aa12.93□□□□□ -0.34
PTPRM-203ENST00000400060 IL27Q8NEV9 243 aa12.93□□□□□ -0.34
PTPRM-203ENST00000400060 ARXQ96QS3 562 aa12.9□□□□□ -0.34
PTPRM-203ENST00000400060 DHX57Q6P158 1386 aaKnown RBP12.9□□□□□ -0.34
PTPRM-203ENST00000400060 CECR2Q9BXF3 1484 aa12.9□□□□□ -0.34
PTPRM-203ENST00000400060 NUDCQ9Y266 331 aa12.89□□□□□ -0.35
PTPRM-203ENST00000400060 ZBED9Q6R2W3 1325 aa12.88□□□□□ -0.35
PTPRM-203ENST00000400060 CCNB3Q8WWL7 1395 aa12.88□□□□□ -0.35
PTPRM-203ENST00000400060 C11orf95C9JLR9 678 aaPredicted RBP12.87□□□□□ -0.35
PTPRM-203ENST00000400060 SETD5Q9C0A6 1442 aa12.85□□□□□ -0.35
PTPRM-203ENST00000400060 CHAF1AQ13111 956 aaPredicted RBP12.84□□□□□ -0.35
PTPRM-203ENST00000400060 BAZ1BQ9UIG0 1483 aaKnown RBP12.84□□□□□ -0.35
PTPRM-203ENST00000400060 PDE4AP27815 886 aa12.84□□□□□ -0.35
PTPRM-203ENST00000400060 DNTTIP2Q5QJE6 756 aaKnown RBP12.83□□□□□ -0.35
PTPRM-203ENST00000400060 PTMAP06454 111 aaKnown RBP12.83□□□□□ -0.36
PTPRM-203ENST00000400060 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.83□□□□□ -0.36
PTPRM-203ENST00000400060 MYH16Q9H6N6 1097 aa12.83□□□□□ -0.36
PTPRM-203ENST00000400060 GBP4Q96PP9 640 aa12.81□□□□□ -0.36
PTPRM-203ENST00000400060 DDX11L8A8MPP1 907 aa12.81□□□□□ -0.36
PTPRM-203ENST00000400060 ISY1Q9ULR0 285 aaKnown RBP12.8□□□□□ -0.36
PTPRM-203ENST00000400060 FBLN2P98095 1184 aa12.8□□□□□ -0.36
PTPRM-203ENST00000400060 PDE3BQ13370 1112 aa12.79□□□□□ -0.36
PTPRM-203ENST00000400060 MROH2BQ7Z745 1585 aa12.79□□□□□ -0.36
PTPRM-203ENST00000400060 KIF27Q86VH2 1401 aa12.79□□□□□ -0.36
PTPRM-203ENST00000400060 NFKBIBQ15653 356 aa12.79□□□□□ -0.36
PTPRM-203ENST00000400060 CSPP1Q1MSJ5 1256 aa12.79□□□□□ -0.36
PTPRM-203ENST00000400060 BRPF3Q9ULD4 1205 aa12.78□□□□□ -0.36
PTPRM-203ENST00000400060 SKOR2Q2VWA4 1001 aaPredicted RBP12.77□□□□□ -0.36
PTPRM-203ENST00000400060 TAF3Q5VWG9 929 aa12.77□□□□□ -0.36
PTPRM-203ENST00000400060 HSCBQ8IWL3 235 aa12.77□□□□□ -0.37
PTPRM-203ENST00000400060 FRAT1Q92837 279 aaPredicted RBP12.77□□□□□ -0.37
PTPRM-203ENST00000400060 ZMYND15Q9H091 742 aa12.76□□□□□ -0.37
PTPRM-203ENST00000400060 MTUS2Q5JR59 1369 aa12.76□□□□□ -0.37
PTPRM-203ENST00000400060 A0A0U1RQG5 324 aaPredicted RBP12.75□□□□□ -0.37
PTPRM-203ENST00000400060 ARID3CA6NKF2 412 aa12.74□□□□□ -0.37
PTPRM-203ENST00000400060 WDR43Q15061 677 aaKnown RBP eCLIP12.74□□□□□ -0.37
PTPRM-203ENST00000400060 FAM161AQ3B820 660 aa12.74□□□□□ -0.37
PTPRM-203ENST00000400060 HIRIP3Q9BW71 556 aaPredicted RBP12.74□□□□□ -0.37
PTPRM-203ENST00000400060 PPP1R15AO75807 674 aaPredicted RBP12.74□□□□□ -0.37
PTPRM-203ENST00000400060 PAK3O75914 559 aaPredicted RBP12.74□□□□□ -0.37
PTPRM-203ENST00000400060 MRE11P49959 708 aa12.73□□□□□ -0.37
PTPRM-203ENST00000400060 SLC4A1APQ9BWU0 796 aaKnown RBP12.73□□□□□ -0.37
PTPRM-203ENST00000400060 RCAN3Q9UKA8 241 aa12.73□□□□□ -0.37
PTPRM-203ENST00000400060 CFAP44Q96MT7 982 aa12.73□□□□□ -0.37
PTPRM-203ENST00000400060 SOGA1O94964 1423 aa12.72□□□□□ -0.37
PTPRM-203ENST00000400060 KCNH8Q96L42 1107 aa12.72□□□□□ -0.37
PTPRM-203ENST00000400060 PDCL3Q9H2J4 239 aa12.72□□□□□ -0.37
PTPRM-203ENST00000400060 RAB3GAP2Q9H2M9 1393 aa12.72□□□□□ -0.37
PTPRM-203ENST00000400060 ZNF777Q9ULD5 760 aaPredicted RBP12.71□□□□□ -0.37
PTPRM-203ENST00000400060 KIAA2012Q0VF49 1180 aa12.71□□□□□ -0.38
PTPRM-203ENST00000400060 CCDC88BA6NC98 1476 aa12.71□□□□□ -0.38
PTPRM-203ENST00000400060 CENPQQ7L2Z9 268 aaPredicted RBP12.7□□□□□ -0.38
PTPRM-203ENST00000400060 WASHC2AQ641Q2 1341 aa12.7□□□□□ -0.38
PTPRM-203ENST00000400060 PDE4CQ08493 712 aa12.69□□□□□ -0.38
PTPRM-203ENST00000400060 HSP90AB1P08238 724 aaKnown RBP12.69□□□□□ -0.38
PTPRM-203ENST00000400060 PHLDB1Q86UU1 1377 aa12.69□□□□□ -0.38
PTPRM-203ENST00000400060 SIN3AQ96ST3 1273 aa12.68□□□□□ -0.38
PTPRM-203ENST00000400060 WASHC2CQ9Y4E1 1318 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms