RNA–Protein interactions for RNA: ENST00000397537.2

SMCO1-201, Transcript of single-pass membrane protein with coiled-coil domains 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO1, Length 1,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO1-201ENST00000397537 SPOCK2Q92563 424 aa11.12□□□□□ -0.63
SMCO1-201ENST00000397537 SAMD1Q6SPF0 538 aaPredicted RBP11.12□□□□□ -0.63
SMCO1-201ENST00000397537 ZMYND15Q9H091 742 aa11.09□□□□□ -0.63
SMCO1-201ENST00000397537 ARID3AQ99856 593 aa11.08□□□□□ -0.64
SMCO1-201ENST00000397537 RSPH6AQ9H0K4 717 aa11.06□□□□□ -0.64
SMCO1-201ENST00000397537 NEUROD2Q15784 382 aa11.05□□□□□ -0.64
SMCO1-201ENST00000397537 LMOD2Q6P5Q4 547 aa11.04□□□□□ -0.64
SMCO1-201ENST00000397537 C1orf115Q9H7X2 142 aa11.03□□□□□ -0.64
SMCO1-201ENST00000397537 ZBTB7CA1YPR0 619 aa11.02□□□□□ -0.64
SMCO1-201ENST00000397537 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.02□□□□□ -0.64
SMCO1-201ENST00000397537 NECTIN2Q92692 538 aa11□□□□□ -0.65
SMCO1-201ENST00000397537 IGSF3O75054 1194 aa10.95□□□□□ -0.66
SMCO1-201ENST00000397537 HS6ST3Q8IZP7 471 aa10.95□□□□□ -0.66
SMCO1-201ENST00000397537 PDIA4P13667 645 aaKnown RBP10.94□□□□□ -0.66
SMCO1-201ENST00000397537 MKRN4PQ13434 485 aaPredicted RBP10.93□□□□□ -0.66
SMCO1-201ENST00000397537 SHROOM4Q9ULL8 1493 aa10.92□□□□□ -0.66
SMCO1-201ENST00000397537 NKX1-1Q15270 411 aaPredicted RBP10.9□□□□□ -0.66
SMCO1-201ENST00000397537 GTPBP6O43824 516 aaPredicted RBP10.88□□□□□ -0.67
SMCO1-201ENST00000397537 ZNF219Q9P2Y4 722 aaPredicted RBP10.88□□□□□ -0.67
SMCO1-201ENST00000397537 SLC24A3Q9HC58 644 aa10.87□□□□□ -0.67
SMCO1-201ENST00000397537 SPINK5Q9NQ38 1064 aaPredicted RBP10.86□□□□□ -0.67
SMCO1-201ENST00000397537 ZC3H15Q8WU90 426 aaKnown RBP10.85□□□□□ -0.67
SMCO1-201ENST00000397537 ARID3CA6NKF2 412 aa10.84□□□□□ -0.67
SMCO1-201ENST00000397537 P3H3Q8IVL6 736 aa10.83□□□□□ -0.68
SMCO1-201ENST00000397537 CAPN15O75808 1086 aa10.79□□□□□ -0.68
SMCO1-201ENST00000397537 APBB1O00213 710 aa10.78□□□□□ -0.68
SMCO1-201ENST00000397537 KCTD17Q8N5Z5 321 aa10.77□□□□□ -0.69
SMCO1-201ENST00000397537 KCNV2Q8TDN2 545 aa10.76□□□□□ -0.69
SMCO1-201ENST00000397537 CDK11BP21127 795 aaKnown RBP10.75□□□□□ -0.69
SMCO1-201ENST00000397537 CDK11AQ9UQ88 783 aaPredicted RBP10.75□□□□□ -0.69
SMCO1-201ENST00000397537 CIZ1Q9ULV3 898 aaPredicted RBP10.74□□□□□ -0.69
SMCO1-201ENST00000397537 RGS22Q8NE09 1264 aa10.73□□□□□ -0.69
SMCO1-201ENST00000397537 RAD21O60216 631 aa10.72□□□□□ -0.69
SMCO1-201ENST00000397537 PLEKHG5O94827 1062 aa10.72□□□□□ -0.69
SMCO1-201ENST00000397537 HMGB1P09429 215 aaKnown RBP10.71□□□□□ -0.69
SMCO1-201ENST00000397537 HSP90B1P14625 803 aaKnown RBP10.7□□□□□ -0.7
SMCO1-201ENST00000397537 RNF25Q96BH1 459 aaPredicted RBP10.7□□□□□ -0.7
SMCO1-201ENST00000397537 POLA2Q14181 598 aa10.7□□□□□ -0.7
SMCO1-201ENST00000397537 IL27Q8NEV9 243 aa10.65□□□□□ -0.7
SMCO1-201ENST00000397537 MKRN3Q13064 507 aaKnown RBP10.65□□□□□ -0.71
SMCO1-201ENST00000397537 MTMR7Q9Y216 660 aa10.65□□□□□ -0.71
SMCO1-201ENST00000397537 ABCB7O75027 752 aa10.64□□□□□ -0.71
SMCO1-201ENST00000397537 ZNF428Q96B54 188 aa10.64□□□□□ -0.71
SMCO1-201ENST00000397537 CHMP4AQ9BY43 222 aa10.64□□□□□ -0.71
SMCO1-201ENST00000397537 GPBP1L1Q9HC44 474 aaPredicted RBP10.64□□□□□ -0.71
SMCO1-201ENST00000397537 CCDC180Q9P1Z9 1646 aa10.63□□□□□ -0.71
SMCO1-201ENST00000397537 PUS7Q96PZ0 661 aaKnown RBP10.63□□□□□ -0.71
SMCO1-201ENST00000397537 PLCD3Q8N3E9 789 aa10.63□□□□□ -0.71
SMCO1-201ENST00000397537 CCDC82Q8N4S0 544 aa10.62□□□□□ -0.71
SMCO1-201ENST00000397537 ZMYND10O75800 440 aa10.61□□□□□ -0.71
SMCO1-201ENST00000397537 TRAIPQ9BWF2 469 aa10.59□□□□□ -0.71
SMCO1-201ENST00000397537 DSG3P32926 999 aa10.58□□□□□ -0.72
SMCO1-201ENST00000397537 TRIM41Q8WV44 630 aa10.58□□□□□ -0.72
SMCO1-201ENST00000397537 RBM25P49756 843 aaKnown RBP10.57□□□□□ -0.72
SMCO1-201ENST00000397537 FOXD4L5Q5VV16 416 aaPredicted RBP10.57□□□□□ -0.72
SMCO1-201ENST00000397537 FOXD4L4Q8WXT5 416 aaPredicted RBP10.57□□□□□ -0.72
SMCO1-201ENST00000397537 AEBP1Q8IUX7 1158 aa10.54□□□□□ -0.72
SMCO1-201ENST00000397537 PABPN1Q86U42 306 aaKnown RBP eCLIP10.52□□□□□ -0.73
SMCO1-201ENST00000397537 WDR70Q9NW82 654 aa10.52□□□□□ -0.73
SMCO1-201ENST00000397537 STAG3Q9UJ98 1225 aa10.52□□□□□ -0.73
SMCO1-201ENST00000397537 TMCO4Q5TGY1 634 aa10.51□□□□□ -0.73
SMCO1-201ENST00000397537 SP7Q8TDD2 431 aaPredicted RBP10.51□□□□□ -0.73
SMCO1-201ENST00000397537 RB1CC1Q8TDY2 1594 aa10.51□□□□□ -0.73
SMCO1-201ENST00000397537 MFAP1P55081 439 aaKnown RBP10.51□□□□□ -0.73
SMCO1-201ENST00000397537 CADPS2Q86UW7 1296 aa10.51□□□□□ -0.73
SMCO1-201ENST00000397537 MIER1Q8N108 512 aa10.5□□□□□ -0.73
SMCO1-201ENST00000397537 KDM4CQ9H3R0 1056 aa10.5□□□□□ -0.73
SMCO1-201ENST00000397537 TESPA1A2RU30 521 aaPredicted RBP10.49□□□□□ -0.73
SMCO1-201ENST00000397537 STK25O00506 426 aa10.49□□□□□ -0.73
SMCO1-201ENST00000397537 SEMA3EO15041 775 aa10.48□□□□□ -0.73
SMCO1-201ENST00000397537 BARGINQ6ZT62 677 aa10.47□□□□□ -0.73
SMCO1-201ENST00000397537 ZBTB12Q9Y330 459 aaPredicted RBP10.47□□□□□ -0.73
SMCO1-201ENST00000397537 RIOK3O14730 519 aaKnown RBP10.46□□□□□ -0.74
SMCO1-201ENST00000397537 GZF1Q9H116 711 aaPredicted RBP10.45□□□□□ -0.74
SMCO1-201ENST00000397537 TRAK2O60296 914 aa10.44□□□□□ -0.74
SMCO1-201ENST00000397537 ARHGEF1Q92888 912 aaKnown RBP10.43□□□□□ -0.74
SMCO1-201ENST00000397537 FLIIQ13045 1269 aa10.42□□□□□ -0.74
SMCO1-201ENST00000397537 AK7Q96M32 723 aa10.42□□□□□ -0.74
SMCO1-201ENST00000397537 RYDENQ9NUL5 291 aaKnown RBP10.42□□□□□ -0.74
SMCO1-201ENST00000397537 E9PSI1 815 aa10.4□□□□□ -0.74
SMCO1-201ENST00000397537 CLUAP1Q96AJ1 413 aa10.4□□□□□ -0.74
SMCO1-201ENST00000397537 A6NJR5 290 aa10.39□□□□□ -0.75
SMCO1-201ENST00000397537 ONECUT3O60422 494 aaPredicted RBP10.38□□□□□ -0.75
SMCO1-201ENST00000397537 CECR2Q9BXF3 1484 aa10.38□□□□□ -0.75
SMCO1-201ENST00000397537 USP35Q9P2H5 1018 aa10.35□□□□□ -0.75
SMCO1-201ENST00000397537 IRF5Q13568 498 aa10.33□□□□□ -0.76
SMCO1-201ENST00000397537 OSCARQ8IYS5 282 aa10.33□□□□□ -0.76
SMCO1-201ENST00000397537 FAM117AQ9C073 453 aa10.33□□□□□ -0.76
SMCO1-201ENST00000397537 VGFO15240 615 aaPredicted RBP10.33□□□□□ -0.76
SMCO1-201ENST00000397537 RETREG2Q8NC44 543 aa10.33□□□□□ -0.76
SMCO1-201ENST00000397537 ZNF316A6NFI3 1004 aaPredicted RBP10.32□□□□□ -0.76
SMCO1-201ENST00000397537 PDE4DQ08499 809 aa10.32□□□□□ -0.76
SMCO1-201ENST00000397537 DHX37Q8IY37 1157 aaKnown RBP10.32□□□□□ -0.76
SMCO1-201ENST00000397537 BCL11BQ9C0K0 894 aaPredicted RBP10.32□□□□□ -0.76
SMCO1-201ENST00000397537 CHRDL2Q6WN34 429 aa10.31□□□□□ -0.76
SMCO1-201ENST00000397537 ZBTB47Q9UFB7 747 aaPredicted RBP10.31□□□□□ -0.76
SMCO1-201ENST00000397537 STK24Q9Y6E0 443 aa10.31□□□□□ -0.76
SMCO1-201ENST00000397537 TRIM66O15016 1216 aa10.3□□□□□ -0.76
SMCO1-201ENST00000397537 GSE1Q14687 1217 aa10.28□□□□□ -0.76
SMCO1-201ENST00000397537 FAM177A1Q8N128 213 aaPredicted RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms