RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 CDCA8Q53HL2 280 aa7.22□□□□□ -1.25
VPS13C-204ENST00000395898 PLPPR3Q6T4P5 718 aa7.21□□□□□ -1.25
VPS13C-204ENST00000395898 ANP32EQ9BTT0 268 aa7.21□□□□□ -1.26
VPS13C-204ENST00000395898 BECN1Q14457 450 aa7.2□□□□□ -1.26
VPS13C-204ENST00000395898 PLEKHD1A6NEE1 506 aa7.2□□□□□ -1.26
VPS13C-204ENST00000395898 BAZ1BQ9UIG0 1483 aaKnown RBP7.2□□□□□ -1.26
VPS13C-204ENST00000395898 DDRGK1Q96HY6 314 aa7.19□□□□□ -1.26
VPS13C-204ENST00000395898 SCAF1Q9H7N4 1312 aaKnown RBP7.19□□□□□ -1.26
VPS13C-204ENST00000395898 CDK11BP21127 795 aaKnown RBP7.19□□□□□ -1.26
VPS13C-204ENST00000395898 KIF27Q86VH2 1401 aa7.18□□□□□ -1.26
VPS13C-204ENST00000395898 CEP164Q9UPV0 1460 aa7.17□□□□□ -1.26
VPS13C-204ENST00000395898 CFAP53Q96M91 514 aa7.17□□□□□ -1.26
VPS13C-204ENST00000395898 PPP1R15AO75807 674 aaPredicted RBP7.17□□□□□ -1.26
VPS13C-204ENST00000395898 CASC1Q6TDU7 716 aa7.16□□□□□ -1.26
VPS13C-204ENST00000395898 CEP162Q5TB80 1403 aa7.16□□□□□ -1.26
VPS13C-204ENST00000395898 NCLP19338 710 aaKnown RBP7.16□□□□□ -1.26
VPS13C-204ENST00000395898 GOLGA6L22H0YM25 854 aa7.16□□□□□ -1.26
VPS13C-204ENST00000395898 KNSTRNQ9Y448 316 aa7.16□□□□□ -1.26
VPS13C-204ENST00000395898 BAZ1AQ9NRL2 1556 aaPredicted RBP7.16□□□□□ -1.26
VPS13C-204ENST00000395898 WRNQ14191 1432 aaPredicted RBP eCLIP7.15□□□□□ -1.26
VPS13C-204ENST00000395898 TRIM44Q96DX7 344 aaPredicted RBP7.15□□□□□ -1.27
VPS13C-204ENST00000395898 NBR1Q14596 966 aa7.15□□□□□ -1.27
VPS13C-204ENST00000395898 RRP7BPQ9NSQ0 103 aa7.15□□□□□ -1.27
VPS13C-204ENST00000395898 FHAD1B1AJZ9 1412 aa7.14□□□□□ -1.27
VPS13C-204ENST00000395898 CFDP1Q9UEE9 299 aaPredicted RBP7.14□□□□□ -1.27
VPS13C-204ENST00000395898 CHMP4BQ9H444 224 aaKnown RBP7.13□□□□□ -1.27
VPS13C-204ENST00000395898 KCNH8Q96L42 1107 aa7.13□□□□□ -1.27
VPS13C-204ENST00000395898 PNNQ9H307 717 aaKnown RBP7.13□□□□□ -1.27
VPS13C-204ENST00000395898 C14orf37Q86TY3 774 aa7.13□□□□□ -1.27
VPS13C-204ENST00000395898 FTSJ3Q8IY81 847 aaKnown RBP7.12□□□□□ -1.27
VPS13C-204ENST00000395898 ZRSR1Q15695 479 aaKnown RBP7.12□□□□□ -1.27
VPS13C-204ENST00000395898 ERCC6Q03468 1493 aa7.12□□□□□ -1.27
VPS13C-204ENST00000395898 MIER1Q8N108 512 aa7.11□□□□□ -1.27
VPS13C-204ENST00000395898 CARD11Q9BXL7 1154 aa7.11□□□□□ -1.27
VPS13C-204ENST00000395898 NUDCQ9Y266 331 aa7.11□□□□□ -1.27
VPS13C-204ENST00000395898 TNIKQ9UKE5 1360 aa7.11□□□□□ -1.27
VPS13C-204ENST00000395898 RGL3Q3MIN7 710 aa7.11□□□□□ -1.27
VPS13C-204ENST00000395898 A0A0G2JS52 829 aa7.1□□□□□ -1.27
VPS13C-204ENST00000395898 HAP1P54257 671 aaPredicted RBP7.1□□□□□ -1.27
VPS13C-204ENST00000395898 MS4A1P11836 297 aa7.1□□□□□ -1.27
VPS13C-204ENST00000395898 ARID4BQ4LE39 1312 aaPredicted RBP7.09□□□□□ -1.27
VPS13C-204ENST00000395898 MAPK8IP3Q9UPT6 1336 aa7.09□□□□□ -1.27
VPS13C-204ENST00000395898 HIRIP3Q9BW71 556 aaPredicted RBP7.09□□□□□ -1.27
VPS13C-204ENST00000395898 ARXQ96QS3 562 aa7.09□□□□□ -1.27
VPS13C-204ENST00000395898 ZBTB7CA1YPR0 619 aa7.08□□□□□ -1.28
VPS13C-204ENST00000395898 HDGFP51858 240 aaKnown RBP7.08□□□□□ -1.28
VPS13C-204ENST00000395898 PPM1GO15355 546 aaPredicted RBP7.07□□□□□ -1.28
VPS13C-204ENST00000395898 KANK1Q14678 1352 aa7.07□□□□□ -1.28
VPS13C-204ENST00000395898 IRX6P78412 446 aaPredicted RBP7.06□□□□□ -1.28
VPS13C-204ENST00000395898 CFAP44Q96MT7 982 aa7.06□□□□□ -1.28
VPS13C-204ENST00000395898 POGKQ9P215 609 aa7.06□□□□□ -1.28
VPS13C-204ENST00000395898 TIMELESSQ9UNS1 1208 aa7.06□□□□□ -1.28
VPS13C-204ENST00000395898 CCNB3Q8WWL7 1395 aa7.05□□□□□ -1.28
VPS13C-204ENST00000395898 TMF1P82094 1093 aa7.04□□□□□ -1.28
VPS13C-204ENST00000395898 SUPT16HQ9Y5B9 1047 aaKnown RBP7.04□□□□□ -1.28
VPS13C-204ENST00000395898 TNNT2P45379 298 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-204ENST00000395898 EIF4G1Q04637 1599 aaKnown RBP7.04□□□□□ -1.28
VPS13C-204ENST00000395898 SMARCA2P51531 1590 aa7.03□□□□□ -1.28
VPS13C-204ENST00000395898 MYO15BQ96JP2 1530 aa7.03□□□□□ -1.28
VPS13C-204ENST00000395898 LAS1LQ9Y4W2 734 aaKnown RBP7.03□□□□□ -1.28
VPS13C-204ENST00000395898 DNTTIP2Q5QJE6 756 aaKnown RBP7.03□□□□□ -1.28
VPS13C-204ENST00000395898 PTMAP06454 111 aaKnown RBP7.02□□□□□ -1.28
VPS13C-204ENST00000395898 GOLGA6L6A8MZA4 724 aa7.02□□□□□ -1.29
VPS13C-204ENST00000395898 ARHGAP35Q9NRY4 1499 aa7.02□□□□□ -1.29
VPS13C-204ENST00000395898 PLEKHG5O94827 1062 aa7.02□□□□□ -1.29
VPS13C-204ENST00000395898 PPP4R2Q9NY27 417 aa7.02□□□□□ -1.29
VPS13C-204ENST00000395898 NPHP1O15259 732 aa7.02□□□□□ -1.29
VPS13C-204ENST00000395898 ERICH6BQ5W0A0 696 aa7.01□□□□□ -1.29
VPS13C-204ENST00000395898 NRDCO43847 1150 aa7.01□□□□□ -1.29
VPS13C-204ENST00000395898 GOLGA2Q08379 1002 aa7.01□□□□□ -1.29
VPS13C-204ENST00000395898 NEUROD2Q15784 382 aa7□□□□□ -1.29
VPS13C-204ENST00000395898 OS9Q13438 667 aaPredicted RBP7□□□□□ -1.29
VPS13C-204ENST00000395898 DCAF11Q8TEB1 546 aa7□□□□□ -1.29
VPS13C-204ENST00000395898 SENP3Q9H4L4 574 aaPredicted RBP7□□□□□ -1.29
VPS13C-204ENST00000395898 CARMIL1Q5VZK9 1371 aa7□□□□□ -1.29
VPS13C-204ENST00000395898 HSP90AB1P08238 724 aaKnown RBP7□□□□□ -1.29
VPS13C-204ENST00000395898 FGD1P98174 961 aa7□□□□□ -1.29
VPS13C-204ENST00000395898 FRAT1Q92837 279 aaPredicted RBP7□□□□□ -1.29
VPS13C-204ENST00000395898 CUX2O14529 1486 aa6.99□□□□□ -1.29
VPS13C-204ENST00000395898 CARMIL2Q6F5E8 1435 aa6.99□□□□□ -1.29
VPS13C-204ENST00000395898 U2SURPO15042 1029 aaKnown RBP6.99□□□□□ -1.29
VPS13C-204ENST00000395898 MCCP23508 829 aa6.99□□□□□ -1.29
VPS13C-204ENST00000395898 KCNJ4P48050 445 aa6.99□□□□□ -1.29
VPS13C-204ENST00000395898 LMOD2Q6P5Q4 547 aa6.99□□□□□ -1.29
VPS13C-204ENST00000395898 CC2D1BQ5T0F9 858 aaKnown RBP6.99□□□□□ -1.29
VPS13C-204ENST00000395898 CHMP4AQ9BY43 222 aa6.98□□□□□ -1.29
VPS13C-204ENST00000395898 SETD5Q9C0A6 1442 aa6.98□□□□□ -1.29
VPS13C-204ENST00000395898 CALD1Q05682 793 aaKnown RBP6.97□□□□□ -1.29
VPS13C-204ENST00000395898 FMN1Q68DA7 1419 aa6.97□□□□□ -1.29
VPS13C-204ENST00000395898 SRPK2P78362 688 aaKnown RBP6.97□□□□□ -1.29
VPS13C-204ENST00000395898 RTF1Q92541 710 aaKnown RBP6.97□□□□□ -1.29
VPS13C-204ENST00000395898 CCER2I3L3R5 266 aa6.97□□□□□ -1.29
VPS13C-204ENST00000395898 HSCBQ8IWL3 235 aa6.96□□□□□ -1.3
VPS13C-204ENST00000395898 PDS5BQ9NTI5 1447 aa6.96□□□□□ -1.3
VPS13C-204ENST00000395898 IPO8O15397 1037 aaKnown RBP6.96□□□□□ -1.3
VPS13C-204ENST00000395898 GOLGA6L4A6NEF3 574 aa6.95□□□□□ -1.3
VPS13C-204ENST00000395898 SIN3AQ96ST3 1273 aa6.95□□□□□ -1.3
VPS13C-204ENST00000395898 NOP58Q9Y2X3 529 aaKnown RBP6.95□□□□□ -1.3
VPS13C-204ENST00000395898 VPS8Q8N3P4 1428 aa6.95□□□□□ -1.3
VPS13C-204ENST00000395898 RGS3P49796 1198 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms