RNA–Protein interactions for RNA: ENST00000392455.7

CCDC50-201, Transcript of coiled-coil domain containing 50, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CCDC50, Length 8,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50-201ENST00000392455 DDX10Q13206 875 aaKnown RBP19.27■□□□□ 0.68
CCDC50-201ENST00000392455 ARXQ96QS3 562 aa19.27■□□□□ 0.68
CCDC50-201ENST00000392455 WDR43Q15061 677 aaKnown RBP eCLIP19.27■□□□□ 0.67
CCDC50-201ENST00000392455 A0A0G2JS52 829 aa19.26■□□□□ 0.67
CCDC50-201ENST00000392455 TMC1Q8TDI8 760 aa19.26■□□□□ 0.67
CCDC50-201ENST00000392455 NBR1Q14596 966 aa19.23■□□□□ 0.67
CCDC50-201ENST00000392455 CHIC2Q9UKJ5 165 aa19.23■□□□□ 0.67
CCDC50-201ENST00000392455 CHMP4BQ9H444 224 aaKnown RBP19.22■□□□□ 0.67
CCDC50-201ENST00000392455 KDM2AQ9Y2K7 1162 aa19.2■□□□□ 0.66
CCDC50-201ENST00000392455 PPM1GO15355 546 aaPredicted RBP19.18■□□□□ 0.66
CCDC50-201ENST00000392455 ZBTB7CA1YPR0 619 aa19.17■□□□□ 0.66
CCDC50-201ENST00000392455 KIAA2012Q0VF49 1180 aa19.17■□□□□ 0.66
CCDC50-201ENST00000392455 PLEKHG5O94827 1062 aa19.16■□□□□ 0.66
CCDC50-201ENST00000392455 CFAP44Q96MT7 982 aa19.16■□□□□ 0.66
CCDC50-201ENST00000392455 SENP3Q9H4L4 574 aaPredicted RBP19.15■□□□□ 0.66
CCDC50-201ENST00000392455 C14orf37Q86TY3 774 aa19.1■□□□□ 0.65
CCDC50-201ENST00000392455 NAP1L5Q96NT1 182 aaPredicted RBP19.1■□□□□ 0.65
CCDC50-201ENST00000392455 PTMSP20962 102 aa19.09■□□□□ 0.65
CCDC50-201ENST00000392455 MRS2Q9HD23 443 aa19.07■□□□□ 0.64
CCDC50-201ENST00000392455 TSPY4P0CV99 314 aa19.05■□□□□ 0.64
CCDC50-201ENST00000392455 TSPY10P0CW01 314 aa19.05■□□□□ 0.64
CCDC50-201ENST00000392455 IRX6P78412 446 aaPredicted RBP19.04■□□□□ 0.64
CCDC50-201ENST00000392455 MSNP26038 577 aaKnown RBP19.03■□□□□ 0.64
CCDC50-201ENST00000392455 MTUS2Q5JR59 1369 aa19■□□□□ 0.63
CCDC50-201ENST00000392455 MS4A1P11836 297 aa19■□□□□ 0.63
CCDC50-201ENST00000392455 NOC3LQ8WTT2 800 aaKnown RBP19■□□□□ 0.63
CCDC50-201ENST00000392455 PNNQ9H307 717 aaKnown RBP18.99■□□□□ 0.63
CCDC50-201ENST00000392455 GOLGA6L1Q8N7Z2 621 aa18.99■□□□□ 0.63
CCDC50-201ENST00000392455 CALRP27797 417 aaKnown RBP18.99■□□□□ 0.63
CCDC50-201ENST00000392455 HIRIP3Q9BW71 556 aaPredicted RBP18.99■□□□□ 0.63
CCDC50-201ENST00000392455 PPP1R15AO75807 674 aaPredicted RBP18.98■□□□□ 0.63
CCDC50-201ENST00000392455 ARID4BQ4LE39 1312 aaPredicted RBP18.98■□□□□ 0.63
CCDC50-201ENST00000392455 TNNT3P45378 269 aaPredicted RBP18.98■□□□□ 0.63
CCDC50-201ENST00000392455 CHMP7Q8WUX9 453 aaPredicted RBP18.96■□□□□ 0.63
CCDC50-201ENST00000392455 GOLGA6L4A6NEF3 574 aa18.96■□□□□ 0.63
CCDC50-201ENST00000392455 SETQ01105 290 aaPredicted RBP18.94■□□□□ 0.62
CCDC50-201ENST00000392455 CCDC34Q96HJ3 373 aa18.94■□□□□ 0.62
CCDC50-201ENST00000392455 EIF4G2P78344 907 aaKnown RBP eCLIP18.94■□□□□ 0.62
CCDC50-201ENST00000392455 CDCA8Q53HL2 280 aa18.92■□□□□ 0.62
CCDC50-201ENST00000392455 CFAP53Q96M91 514 aa18.92■□□□□ 0.62
CCDC50-201ENST00000392455 FGD1P98174 961 aa18.92■□□□□ 0.62
CCDC50-201ENST00000392455 HAP1P54257 671 aaPredicted RBP18.91■□□□□ 0.62
CCDC50-201ENST00000392455 DCAF1Q9Y4B6 1507 aa18.91■□□□□ 0.62
CCDC50-201ENST00000392455 FTSJ3Q8IY81 847 aaKnown RBP18.91■□□□□ 0.62
CCDC50-201ENST00000392455 RRP7BPQ9NSQ0 103 aa18.9■□□□□ 0.62
CCDC50-201ENST00000392455 MCCP23508 829 aa18.89■□□□□ 0.61
CCDC50-201ENST00000392455 KCNH8Q96L42 1107 aa18.89■□□□□ 0.61
CCDC50-201ENST00000392455 TULP1O00294 542 aaPredicted RBP18.87■□□□□ 0.61
CCDC50-201ENST00000392455 HTATSF1O43719 755 aaKnown RBP18.87■□□□□ 0.61
CCDC50-201ENST00000392455 GOLGA2Q08379 1002 aa18.86■□□□□ 0.61
CCDC50-201ENST00000392455 TPRNQ4KMQ1 711 aa18.85■□□□□ 0.61
CCDC50-201ENST00000392455 HSP90AB1P08238 724 aaKnown RBP18.84■□□□□ 0.61
CCDC50-201ENST00000392455 DRC7Q8IY82 874 aa18.84■□□□□ 0.61
CCDC50-201ENST00000392455 TPM4P67936 248 aa18.83■□□□□ 0.6
CCDC50-201ENST00000392455 RGL3Q3MIN7 710 aa18.82■□□□□ 0.6
CCDC50-201ENST00000392455 SYAP1Q96A49 352 aaPredicted RBP18.81■□□□□ 0.6
CCDC50-201ENST00000392455 MIER1Q8N108 512 aa18.81■□□□□ 0.6
CCDC50-201ENST00000392455 PLCB2Q00722 1185 aa18.81■□□□□ 0.6
CCDC50-201ENST00000392455 SENP3-EIF4A1A0A087X0R7 540 aa18.8■□□□□ 0.6
CCDC50-201ENST00000392455 A0A0U1RQG5 324 aaPredicted RBP18.8■□□□□ 0.6
CCDC50-201ENST00000392455 CLSTN1O94985 981 aa18.8■□□□□ 0.6
CCDC50-201ENST00000392455 KCNJ4P48050 445 aa18.8■□□□□ 0.6
CCDC50-201ENST00000392455 LAS1LQ9Y4W2 734 aaKnown RBP18.78■□□□□ 0.6
CCDC50-201ENST00000392455 NPHP1O15259 732 aa18.77■□□□□ 0.6
CCDC50-201ENST00000392455 HSCBQ8IWL3 235 aa18.76■□□□□ 0.59
CCDC50-201ENST00000392455 CLIP1P30622 1438 aa18.76■□□□□ 0.59
CCDC50-201ENST00000392455 KNSTRNQ9Y448 316 aa18.75■□□□□ 0.59
CCDC50-201ENST00000392455 PRM3Q9NNZ6 103 aa18.74■□□□□ 0.59
CCDC50-201ENST00000392455 TAOK2Q9UL54 1235 aa18.74■□□□□ 0.59
CCDC50-201ENST00000392455 GNL2Q13823 731 aaKnown RBP18.73■□□□□ 0.59
CCDC50-201ENST00000392455 RSF1Q96T23 1441 aaPredicted RBP18.73■□□□□ 0.59
CCDC50-201ENST00000392455 ZCCHC6Q5VYS8 1495 aaKnown RBP18.72■□□□□ 0.59
CCDC50-201ENST00000392455 PLEKHD1A6NEE1 506 aa18.71■□□□□ 0.59
CCDC50-201ENST00000392455 CSPP1Q1MSJ5 1256 aa18.7■□□□□ 0.58
CCDC50-201ENST00000392455 CEP89Q96ST8 783 aa18.7■□□□□ 0.58
CCDC50-201ENST00000392455 LMOD2Q6P5Q4 547 aa18.69■□□□□ 0.58
CCDC50-201ENST00000392455 CHMP4AQ9BY43 222 aa18.69■□□□□ 0.58
CCDC50-201ENST00000392455 NEUROD2Q15784 382 aa18.68■□□□□ 0.58
CCDC50-201ENST00000392455 OS9Q13438 667 aaPredicted RBP18.68■□□□□ 0.58
CCDC50-201ENST00000392455 NUDCQ9Y266 331 aa18.67■□□□□ 0.58
CCDC50-201ENST00000392455 GBP4Q96PP9 640 aa18.67■□□□□ 0.58
CCDC50-201ENST00000392455 MAPK8IP3Q9UPT6 1336 aa18.67■□□□□ 0.58
CCDC50-201ENST00000392455 NOP58Q9Y2X3 529 aaKnown RBP18.66■□□□□ 0.58
CCDC50-201ENST00000392455 PHF14O94880 888 aa18.65■□□□□ 0.58
CCDC50-201ENST00000392455 CARD11Q9BXL7 1154 aa18.64■□□□□ 0.57
CCDC50-201ENST00000392455 GPS2Q13227 327 aa18.63■□□□□ 0.57
CCDC50-201ENST00000392455 CCDC180Q9P1Z9 1646 aa18.63■□□□□ 0.57
CCDC50-201ENST00000392455 NCBP3Q53F19 620 aaKnown RBP18.63■□□□□ 0.57
CCDC50-201ENST00000392455 CCDC70Q6NSX1 233 aa18.62■□□□□ 0.57
CCDC50-201ENST00000392455 POGKQ9P215 609 aa18.62■□□□□ 0.57
CCDC50-201ENST00000392455 GOLGA3Q08378 1498 aa18.61■□□□□ 0.57
CCDC50-201ENST00000392455 NAP1L2Q9ULW6 460 aaPredicted RBP18.61■□□□□ 0.57
CCDC50-201ENST00000392455 SUPT16HQ9Y5B9 1047 aaKnown RBP18.6■□□□□ 0.57
CCDC50-201ENST00000392455 CFDP1Q9UEE9 299 aaPredicted RBP18.6■□□□□ 0.57
CCDC50-201ENST00000392455 KIAA1211Q6ZU35 1233 aa18.59■□□□□ 0.57
CCDC50-201ENST00000392455 FRAT1Q92837 279 aaPredicted RBP18.59■□□□□ 0.57
CCDC50-201ENST00000392455 TPM3P06753 285 aa18.58■□□□□ 0.56
CCDC50-201ENST00000392455 CHMP4CQ96CF2 233 aa18.57■□□□□ 0.56
CCDC50-201ENST00000392455 RRP12Q5JTH9 1297 aaKnown RBP18.56■□□□□ 0.56
CCDC50-201ENST00000392455 RB1CC1Q8TDY2 1594 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms