RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 MSH5O43196 834 aa12.65□□□□□ -0.38
LIMCH1-202ENST00000381753 CSB-PGBD3P0DP91 1061 aa12.64□□□□□ -0.39
LIMCH1-202ENST00000381753 KDM2AQ9Y2K7 1162 aa12.64□□□□□ -0.39
LIMCH1-202ENST00000381753 FAM69CQ0P6D2 419 aa12.63□□□□□ -0.39
LIMCH1-202ENST00000381753 CFDP1Q9UEE9 299 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-202ENST00000381753 LOC105371045A0A1W2PR82 267 aa12.61□□□□□ -0.39
LIMCH1-202ENST00000381753 TMC1Q8TDI8 760 aa12.61□□□□□ -0.39
LIMCH1-202ENST00000381753 PAK3O75914 559 aaPredicted RBP12.59□□□□□ -0.39
LIMCH1-202ENST00000381753 EIF4G1Q04637 1599 aaKnown RBP12.58□□□□□ -0.39
LIMCH1-202ENST00000381753 KANK1Q14678 1352 aa12.58□□□□□ -0.4
LIMCH1-202ENST00000381753 CCDC180Q9P1Z9 1646 aa12.56□□□□□ -0.4
LIMCH1-202ENST00000381753 PPM1GO15355 546 aaPredicted RBP12.56□□□□□ -0.4
LIMCH1-202ENST00000381753 CARMIL2Q6F5E8 1435 aa12.56□□□□□ -0.4
LIMCH1-202ENST00000381753 SOX12O15370 315 aa12.54□□□□□ -0.4
LIMCH1-202ENST00000381753 EIF4G2P78344 907 aaKnown RBP eCLIP12.54□□□□□ -0.4
LIMCH1-202ENST00000381753 PIP4K2BP78356 416 aa12.52□□□□□ -0.41
LIMCH1-202ENST00000381753 RGL3Q3MIN7 710 aa12.51□□□□□ -0.41
LIMCH1-202ENST00000381753 GOLGA2Q08379 1002 aa12.51□□□□□ -0.41
LIMCH1-202ENST00000381753 G3V3G9 751 aa12.51□□□□□ -0.41
LIMCH1-202ENST00000381753 DCAF8Q5TAQ9 597 aa12.51□□□□□ -0.41
LIMCH1-202ENST00000381753 EVA1CP58658 441 aa12.48□□□□□ -0.41
LIMCH1-202ENST00000381753 ZNF316A6NFI3 1004 aaPredicted RBP12.46□□□□□ -0.42
LIMCH1-202ENST00000381753 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.46□□□□□ -0.42
LIMCH1-202ENST00000381753 TULP1O00294 542 aaPredicted RBP12.45□□□□□ -0.42
LIMCH1-202ENST00000381753 PPP1R1BQ9UD71 204 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-202ENST00000381753 ZNF330Q9Y3S2 320 aaPredicted RBP12.44□□□□□ -0.42
LIMCH1-202ENST00000381753 RSF1Q96T23 1441 aaPredicted RBP12.43□□□□□ -0.42
LIMCH1-202ENST00000381753 EFCAB2Q5VUJ9 269 aa12.43□□□□□ -0.42
LIMCH1-202ENST00000381753 SMARCA2P51531 1590 aa12.43□□□□□ -0.42
LIMCH1-202ENST00000381753 CLIP1P30622 1438 aa12.42□□□□□ -0.42
LIMCH1-202ENST00000381753 RRP7BPQ9NSQ0 103 aa12.41□□□□□ -0.42
LIMCH1-202ENST00000381753 TRIM26Q12899 539 aaPredicted RBP12.4□□□□□ -0.43
LIMCH1-202ENST00000381753 STK26Q9P289 416 aa12.4□□□□□ -0.43
LIMCH1-202ENST00000381753 ISY1Q9ULR0 285 aaKnown RBP12.39□□□□□ -0.43
LIMCH1-202ENST00000381753 SAFB2Q14151 953 aaKnown RBP eCLIP12.39□□□□□ -0.43
LIMCH1-202ENST00000381753 ATF3P18847 181 aa12.38□□□□□ -0.43
LIMCH1-202ENST00000381753 KIF27Q86VH2 1401 aa12.37□□□□□ -0.43
LIMCH1-202ENST00000381753 ANP32CO43423 234 aa12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 NUTM2BA6NNL0 878 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 NUTM2EB1AL46 878 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 SRPK2P78362 688 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 NUTM2AQ8IVF1 878 aaPredicted RBP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 CDK11BP21127 795 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 WDR43Q15061 677 aaKnown RBP eCLIP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 TONSLQ96HA7 1378 aa12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 WASHC2CQ9Y4E1 1318 aa12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 TDRD9Q8NDG6 1382 aaKnown RBP12.36□□□□□ -0.43
LIMCH1-202ENST00000381753 CCNB3Q8WWL7 1395 aa12.35□□□□□ -0.43
LIMCH1-202ENST00000381753 WRNQ14191 1432 aaPredicted RBP eCLIP12.34□□□□□ -0.43
LIMCH1-202ENST00000381753 GTF2E1P29083 439 aaPredicted RBP12.34□□□□□ -0.43
LIMCH1-202ENST00000381753 SOGA1O94964 1423 aa12.33□□□□□ -0.43
LIMCH1-202ENST00000381753 NGDNQ8NEJ9 315 aaKnown RBP12.33□□□□□ -0.44
LIMCH1-202ENST00000381753 CEP164Q9UPV0 1460 aa12.33□□□□□ -0.44
LIMCH1-202ENST00000381753 CFAP53Q96M91 514 aa12.33□□□□□ -0.44
LIMCH1-202ENST00000381753 KRI1Q8N9T8 703 aaKnown RBP12.32□□□□□ -0.44
LIMCH1-202ENST00000381753 KIF3BO15066 747 aa12.3□□□□□ -0.44
LIMCH1-202ENST00000381753 NUTM2DQ5VT03 806 aaPredicted RBP12.3□□□□□ -0.44
LIMCH1-202ENST00000381753 JPH4Q96JJ6 628 aa12.29□□□□□ -0.44
LIMCH1-202ENST00000381753 MYH16Q9H6N6 1097 aa12.29□□□□□ -0.44
LIMCH1-202ENST00000381753 NCBP3Q53F19 620 aaKnown RBP12.28□□□□□ -0.44
LIMCH1-202ENST00000381753 CDCA8Q53HL2 280 aa12.28□□□□□ -0.44
LIMCH1-202ENST00000381753 CUX2O14529 1486 aa12.27□□□□□ -0.44
LIMCH1-202ENST00000381753 NUTM2FA1L443 756 aa12.27□□□□□ -0.45
LIMCH1-202ENST00000381753 SYTL4Q96C24 671 aaPredicted RBP12.26□□□□□ -0.45
LIMCH1-202ENST00000381753 CWC22Q9HCG8 908 aaKnown RBP12.26□□□□□ -0.45
LIMCH1-202ENST00000381753 ZCCHC6Q5VYS8 1495 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-202ENST00000381753 SPAG9O60271 1321 aaKnown RBP12.25□□□□□ -0.45
LIMCH1-202ENST00000381753 LAS1LQ9Y4W2 734 aaKnown RBP12.24□□□□□ -0.45
LIMCH1-202ENST00000381753 DMRT2Q9Y5R5 561 aa12.24□□□□□ -0.45
LIMCH1-202ENST00000381753 SALL2Q9Y467 1007 aaPredicted RBP12.22□□□□□ -0.45
LIMCH1-202ENST00000381753 CFAP44Q96MT7 982 aa12.22□□□□□ -0.45
LIMCH1-202ENST00000381753 NUDCQ9Y266 331 aa12.22□□□□□ -0.45
LIMCH1-202ENST00000381753 MAPK8IP3Q9UPT6 1336 aa12.22□□□□□ -0.45
LIMCH1-202ENST00000381753 HDGFL2Q7Z4V5 671 aaPredicted RBP12.21□□□□□ -0.46
LIMCH1-202ENST00000381753 CLSTN1O94985 981 aa12.2□□□□□ -0.46
LIMCH1-202ENST00000381753 PTPRGP23470 1445 aa12.2□□□□□ -0.46
LIMCH1-202ENST00000381753 PROSER2Q86WR7 435 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-202ENST00000381753 TNNT2P45379 298 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-202ENST00000381753 CARMIL1Q5VZK9 1371 aa12.19□□□□□ -0.46
LIMCH1-202ENST00000381753 RTF1Q92541 710 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-202ENST00000381753 CADPSQ9ULU8 1353 aa12.19□□□□□ -0.46
LIMCH1-202ENST00000381753 PSME1Q06323 249 aa12.17□□□□□ -0.46
LIMCH1-202ENST00000381753 OS9Q13438 667 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-202ENST00000381753 ACIN1Q9UKV3 1341 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-202ENST00000381753 KNSTRNQ9Y448 316 aa12.16□□□□□ -0.46
LIMCH1-202ENST00000381753 BAZ1AQ9NRL2 1556 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-202ENST00000381753 LTV1Q96GA3 475 aaPredicted RBP12.16□□□□□ -0.46
LIMCH1-202ENST00000381753 U2SURPO15042 1029 aaKnown RBP12.16□□□□□ -0.46
LIMCH1-202ENST00000381753 RTL5Q5HYW3 569 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-202ENST00000381753 PAXIP1Q6ZW49 1069 aaPredicted RBP12.15□□□□□ -0.46
LIMCH1-202ENST00000381753 UBAP1LF5GYI3 381 aa12.15□□□□□ -0.46
LIMCH1-202ENST00000381753 POGZQ7Z3K3 1410 aa12.15□□□□□ -0.47
LIMCH1-202ENST00000381753 WASHC2AQ641Q2 1341 aa12.14□□□□□ -0.47
LIMCH1-202ENST00000381753 TAOK2Q9UL54 1235 aa12.13□□□□□ -0.47
LIMCH1-202ENST00000381753 HSP90AA1P07900 732 aaKnown RBP12.12□□□□□ -0.47
LIMCH1-202ENST00000381753 AMPHP49418 695 aa12.12□□□□□ -0.47
LIMCH1-202ENST00000381753 FRAT2O75474 233 aaPredicted RBP12.11□□□□□ -0.47
LIMCH1-202ENST00000381753 TAF7LQ5H9L4 462 aa12.1□□□□□ -0.47
LIMCH1-202ENST00000381753 FBXW7Q969H0 707 aa12.1□□□□□ -0.47
LIMCH1-202ENST00000381753 PNNQ9H307 717 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms