RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 TRIM44Q96DX7 344 aaPredicted RBP15.19■□□□□ 0.02
VCL-202ENST00000372755 EIF4G2P78344 907 aaKnown RBP eCLIP15.18■□□□□ 0.022e-6■■■□□ 16.3
VCL-202ENST00000372755 ZBTB7CA1YPR0 619 aa15.18■□□□□ 0.02
VCL-202ENST00000372755 PPP1R15AO75807 674 aaPredicted RBP15.17■□□□□ 0.02
VCL-202ENST00000372755 C14orf37Q86TY3 774 aa15.16■□□□□ 0.02
VCL-202ENST00000372755 ZRSR1Q15695 479 aaKnown RBP15.15■□□□□ 0.02
VCL-202ENST00000372755 CFAP53Q96M91 514 aa15.15■□□□□ 0.02
VCL-202ENST00000372755 SCRIBQ14160 1630 aa15.14■□□□□ 0.01
VCL-202ENST00000372755 CASC1Q6TDU7 716 aa15.14■□□□□ 0.01
VCL-202ENST00000372755 IRX6P78412 446 aaPredicted RBP15.12■□□□□ 0.01
VCL-202ENST00000372755 CHMP7Q8WUX9 453 aaPredicted RBP15.12■□□□□ 0.01
VCL-202ENST00000372755 CDCA8Q53HL2 280 aa15.11■□□□□ 0.01
VCL-202ENST00000372755 PTMAP06454 111 aaKnown RBP15.08■□□□□ 0
VCL-202ENST00000372755 TNNT2P45379 298 aaPredicted RBP15.07■□□□□ 0
VCL-202ENST00000372755 RSF1Q96T23 1441 aaPredicted RBP15.06■□□□□ 0
VCL-202ENST00000372755 HAP1P54257 671 aaPredicted RBP15.06■□□□□ 0
VCL-202ENST00000372755 MIER1Q8N108 512 aa15.05■□□□□ 0
VCL-202ENST00000372755 PLEKHG5O94827 1062 aa15.05■□□□□ -0
VCL-202ENST00000372755 RRP7BPQ9NSQ0 103 aa15.05■□□□□ -0
VCL-202ENST00000372755 KNSTRNQ9Y448 316 aa15.04■□□□□ -0
VCL-202ENST00000372755 FTSJ3Q8IY81 847 aaKnown RBP15.04■□□□□ -0
VCL-202ENST00000372755 CLIP1P30622 1438 aa15.03■□□□□ -0
VCL-202ENST00000372755 HIRIP3Q9BW71 556 aaPredicted RBP15.03■□□□□ -0
VCL-202ENST00000372755 PLEKHD1A6NEE1 506 aa15.02■□□□□ -0
VCL-202ENST00000372755 PPM1GO15355 546 aaPredicted RBP15.01□□□□□ -0.01
VCL-202ENST00000372755 MAPK8IP3Q9UPT6 1336 aa15□□□□□ -0.01
VCL-202ENST00000372755 DNTTIP2Q5QJE6 756 aaKnown RBP14.99□□□□□ -0.01
VCL-202ENST00000372755 CHMP4BQ9H444 224 aaKnown RBP14.99□□□□□ -0.01
VCL-202ENST00000372755 KCNH8Q96L42 1107 aa14.99□□□□□ -0.01
VCL-202ENST00000372755 NUDCQ9Y266 331 aa14.98□□□□□ -0.01
VCL-202ENST00000372755 SENP3Q9H4L4 574 aaPredicted RBP14.98□□□□□ -0.01
VCL-202ENST00000372755 RGL3Q3MIN7 710 aa14.98□□□□□ -0.01
VCL-202ENST00000372755 GOLGA6L6A8MZA4 724 aa14.96□□□□□ -0.01
VCL-202ENST00000372755 ERICH6BQ5W0A0 696 aa14.95□□□□□ -0.02
VCL-202ENST00000372755 MS4A1P11836 297 aa14.94□□□□□ -0.02
VCL-202ENST00000372755 ARID4BQ4LE39 1312 aaPredicted RBP14.94□□□□□ -0.02
VCL-202ENST00000372755 CARD11Q9BXL7 1154 aa14.94□□□□□ -0.02
VCL-202ENST00000372755 LAS1LQ9Y4W2 734 aaKnown RBP14.93□□□□□ -0.02
VCL-202ENST00000372755 TULP1O00294 542 aaPredicted RBP14.91□□□□□ -0.02
VCL-202ENST00000372755 TPRNQ4KMQ1 711 aa14.91□□□□□ -0.02
VCL-202ENST00000372755 CFDP1Q9UEE9 299 aaPredicted RBP14.9□□□□□ -0.02
VCL-202ENST00000372755 NRDCO43847 1150 aa14.9□□□□□ -0.02
VCL-202ENST00000372755 PNNQ9H307 717 aaKnown RBP14.9□□□□□ -0.02
VCL-202ENST00000372755 EEA1Q15075 1411 aa14.89□□□□□ -0.03
VCL-202ENST00000372755 POGKQ9P215 609 aa14.89□□□□□ -0.03
VCL-202ENST00000372755 OS9Q13438 667 aaPredicted RBP14.89□□□□□ -0.03
VCL-202ENST00000372755 GOLGA3Q08378 1498 aa14.89□□□□□ -0.03
VCL-202ENST00000372755 ZCCHC6Q5VYS8 1495 aaKnown RBP14.89□□□□□ -0.03
VCL-202ENST00000372755 NPHP1O15259 732 aa14.89□□□□□ -0.03
VCL-202ENST00000372755 NEUROD2Q15784 382 aa14.89□□□□□ -0.03
VCL-202ENST00000372755 FGD1P98174 961 aa14.88□□□□□ -0.03
VCL-202ENST00000372755 HSP90AB1P08238 724 aaKnown RBP14.87□□□□□ -0.03
VCL-202ENST00000372755 SUPT16HQ9Y5B9 1047 aaKnown RBP14.87□□□□□ -0.03
VCL-202ENST00000372755 PPP4R2Q9NY27 417 aa14.87□□□□□ -0.03
VCL-202ENST00000372755 PLCB2Q00722 1185 aa14.86□□□□□ -0.03
VCL-202ENST00000372755 FRAT1Q92837 279 aaPredicted RBP14.85□□□□□ -0.03
VCL-202ENST00000372755 NAP1L5Q96NT1 182 aaPredicted RBP14.85□□□□□ -0.03
VCL-202ENST00000372755 KCNJ4P48050 445 aa14.85□□□□□ -0.03
VCL-202ENST00000372755 RGS3P49796 1198 aa14.84□□□□□ -0.03
VCL-202ENST00000372755 LMOD2Q6P5Q4 547 aa14.84□□□□□ -0.03
VCL-202ENST00000372755 GOLGA2Q08379 1002 aa14.83□□□□□ -0.04
VCL-202ENST00000372755 GOLGA6L4A6NEF3 574 aa14.81□□□□□ -0.04
VCL-202ENST00000372755 CEP162Q5TB80 1403 aa14.81□□□□□ -0.04
VCL-202ENST00000372755 NAP1L2Q9ULW6 460 aaPredicted RBP14.8□□□□□ -0.04
VCL-202ENST00000372755 TAOK2Q9UL54 1235 aa14.8□□□□□ -0.04
VCL-202ENST00000372755 SENP3-EIF4A1A0A087X0R7 540 aa14.8□□□□□ -0.04
VCL-202ENST00000372755 NOP58Q9Y2X3 529 aaKnown RBP14.8□□□□□ -0.04
VCL-202ENST00000372755 U2SURPO15042 1029 aaKnown RBP14.79□□□□□ -0.04
VCL-202ENST00000372755 CFAP44Q96MT7 982 aa14.79□□□□□ -0.04
VCL-202ENST00000372755 HSCBQ8IWL3 235 aa14.79□□□□□ -0.04
VCL-202ENST00000372755 MCCP23508 829 aa14.79□□□□□ -0.04
VCL-202ENST00000372755 CHAF1AQ13111 956 aaPredicted RBP14.78□□□□□ -0.04
VCL-202ENST00000372755 CC2D1BQ5T0F9 858 aaKnown RBP14.76□□□□□ -0.05
VCL-202ENST00000372755 TMF1P82094 1093 aa14.76□□□□□ -0.05
VCL-202ENST00000372755 HDGFP51858 240 aaKnown RBP14.75□□□□□ -0.05
VCL-202ENST00000372755 L1TD1Q5T7N2 865 aaKnown RBP14.75□□□□□ -0.05
VCL-202ENST00000372755 KIF27Q86VH2 1401 aa14.74□□□□□ -0.05
VCL-202ENST00000372755 KANK1Q14678 1352 aa14.74□□□□□ -0.05
VCL-202ENST00000372755 MSNP26038 577 aaKnown RBP14.7□□□□□ -0.06
VCL-202ENST00000372755 CEP164Q9UPV0 1460 aa14.7□□□□□ -0.06
VCL-202ENST00000372755 WRNQ14191 1432 aaPredicted RBP eCLIP14.7□□□□□ -0.06
VCL-202ENST00000372755 CCNB3Q8WWL7 1395 aa14.69□□□□□ -0.06
VCL-202ENST00000372755 CLSTN1O94985 981 aa14.69□□□□□ -0.06
VCL-202ENST00000372755 TNIKQ9UKE5 1360 aa14.68□□□□□ -0.06
VCL-202ENST00000372755 DRC7Q8IY82 874 aa14.68□□□□□ -0.06
VCL-202ENST00000372755 MORC1Q86VD1 984 aa14.67□□□□□ -0.06
VCL-202ENST00000372755 RTF1Q92541 710 aaKnown RBP14.67□□□□□ -0.06
VCL-202ENST00000372755 GNL2Q13823 731 aaKnown RBP14.67□□□□□ -0.06
VCL-202ENST00000372755 PTMSP20962 102 aa14.66□□□□□ -0.06
VCL-202ENST00000372755 SIN3AQ96ST3 1273 aa14.66□□□□□ -0.06
VCL-202ENST00000372755 SRPK2P78362 688 aaKnown RBP14.66□□□□□ -0.06
VCL-202ENST00000372755 DCAF11Q8TEB1 546 aa14.65□□□□□ -0.06
VCL-202ENST00000372755 RTN4Q9NQC3 1192 aaKnown RBP14.65□□□□□ -0.06
VCL-202ENST00000372755 IPO8O15397 1037 aaKnown RBP14.64□□□□□ -0.07
VCL-202ENST00000372755 B4GALNT3Q6L9W6 998 aa14.64□□□□□ -0.07
VCL-202ENST00000372755 ISY1Q9ULR0 285 aaKnown RBP14.63□□□□□ -0.07
VCL-202ENST00000372755 KIAA2012Q0VF49 1180 aa14.63□□□□□ -0.07
VCL-202ENST00000372755 KIAA1211Q6ZU35 1233 aa14.63□□□□□ -0.07
VCL-202ENST00000372755 TIMELESSQ9UNS1 1208 aa14.63□□□□□ -0.07
VCL-202ENST00000372755 RB1CC1Q8TDY2 1594 aa14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms