RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 PPP1R15AO75807 674 aaPredicted RBP13.22□□□□□ -0.29
COL4A6-202ENST00000372216 DCAF1Q9Y4B6 1507 aa13.22□□□□□ -0.29
COL4A6-202ENST00000372216 TPRNQ4KMQ1 711 aa13.22□□□□□ -0.29
COL4A6-202ENST00000372216 FAM9BQ8IZU0 186 aa13.2□□□□□ -0.3
COL4A6-202ENST00000372216 DDX10Q13206 875 aaKnown RBP13.2□□□□□ -0.3
COL4A6-202ENST00000372216 KIF27Q86VH2 1401 aa13.19□□□□□ -0.3
COL4A6-202ENST00000372216 CDK11BP21127 795 aaKnown RBP13.17□□□□□ -0.3
COL4A6-202ENST00000372216 EIF5BO60841 1220 aaKnown RBP13.17□□□□□ -0.3
COL4A6-202ENST00000372216 EEA1Q15075 1411 aa13.17□□□□□ -0.3
COL4A6-202ENST00000372216 BAZ1AQ9NRL2 1556 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-202ENST00000372216 WDR43Q15061 677 aaKnown RBP eCLIP13.15□□□□□ -0.3
COL4A6-202ENST00000372216 ANP32AP39687 249 aaKnown RBP13.15□□□□□ -0.31
COL4A6-202ENST00000372216 SENP3-EIF4A1A0A087X0R7 540 aa13.14□□□□□ -0.31
COL4A6-202ENST00000372216 HNRNPUQ00839 825 aaKnown RBP eCLIP13.14□□□□□ -0.31
COL4A6-202ENST00000372216 TMC1Q8TDI8 760 aa13.14□□□□□ -0.31
COL4A6-202ENST00000372216 CFDP1Q9UEE9 299 aaPredicted RBP13.13□□□□□ -0.31
COL4A6-202ENST00000372216 CEP162Q5TB80 1403 aa13.13□□□□□ -0.31
COL4A6-202ENST00000372216 ANP32BQ92688 251 aaKnown RBP13.13□□□□□ -0.31
COL4A6-202ENST00000372216 EIF4G1Q04637 1599 aaKnown RBP13.13□□□□□ -0.31
COL4A6-202ENST00000372216 NPHP1O15259 732 aa13.12□□□□□ -0.31
COL4A6-202ENST00000372216 RGL3Q3MIN7 710 aa13.1□□□□□ -0.31
COL4A6-202ENST00000372216 LMOD2Q6P5Q4 547 aa13.1□□□□□ -0.31
COL4A6-202ENST00000372216 CEP164Q9UPV0 1460 aa13.08□□□□□ -0.32
COL4A6-202ENST00000372216 HIRIP3Q9BW71 556 aaPredicted RBP13.08□□□□□ -0.32
COL4A6-202ENST00000372216 CECR2Q9BXF3 1484 aa13.07□□□□□ -0.32
COL4A6-202ENST00000372216 TRHP20396 242 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-202ENST00000372216 FKBP8Q14318 412 aa13.05□□□□□ -0.32
COL4A6-202ENST00000372216 MRS2Q9HD23 443 aa13.04□□□□□ -0.32
COL4A6-202ENST00000372216 NBR1Q14596 966 aa13.04□□□□□ -0.32
COL4A6-202ENST00000372216 EIF4G2P78344 907 aaKnown RBP eCLIP13.04□□□□□ -0.32
COL4A6-202ENST00000372216 ACIN1Q9UKV3 1341 aaKnown RBP13.04□□□□□ -0.32
COL4A6-202ENST00000372216 UPF2Q9HAU5 1272 aaKnown RBP13.03□□□□□ -0.32
COL4A6-202ENST00000372216 PPM1GO15355 546 aaPredicted RBP13.03□□□□□ -0.32
COL4A6-202ENST00000372216 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.03□□□□□ -0.32
COL4A6-202ENST00000372216 CUX2O14529 1486 aa13.02□□□□□ -0.32
COL4A6-202ENST00000372216 MYO15BQ96JP2 1530 aa13.02□□□□□ -0.33
COL4A6-202ENST00000372216 TNIKQ9UKE5 1360 aa13□□□□□ -0.33
COL4A6-202ENST00000372216 IRX6P78412 446 aaPredicted RBP13□□□□□ -0.33
COL4A6-202ENST00000372216 CCNB3Q8WWL7 1395 aa12.99□□□□□ -0.33
COL4A6-202ENST00000372216 CARMIL1Q5VZK9 1371 aa12.98□□□□□ -0.33
COL4A6-202ENST00000372216 SMARCA2P51531 1590 aa12.96□□□□□ -0.33
COL4A6-202ENST00000372216 CLSTN1O94985 981 aa12.96□□□□□ -0.33
COL4A6-202ENST00000372216 AMER1Q5JTC6 1135 aaPredicted RBP12.96□□□□□ -0.33
COL4A6-202ENST00000372216 MLECQ14165 292 aa12.96□□□□□ -0.34
COL4A6-202ENST00000372216 LAS1LQ9Y4W2 734 aaKnown RBP12.95□□□□□ -0.34
COL4A6-202ENST00000372216 PDS5BQ9NTI5 1447 aa12.95□□□□□ -0.34
COL4A6-202ENST00000372216 MYH16Q9H6N6 1097 aa12.95□□□□□ -0.34
COL4A6-202ENST00000372216 POGKQ9P215 609 aa12.95□□□□□ -0.34
COL4A6-202ENST00000372216 CARD11Q9BXL7 1154 aa12.94□□□□□ -0.34
COL4A6-202ENST00000372216 CDCA8Q53HL2 280 aa12.93□□□□□ -0.34
COL4A6-202ENST00000372216 CCDC136Q96JN2 1154 aa12.93□□□□□ -0.34
COL4A6-202ENST00000372216 CFAP53Q96M91 514 aa12.93□□□□□ -0.34
COL4A6-202ENST00000372216 FHAD1B1AJZ9 1412 aa12.92□□□□□ -0.34
COL4A6-202ENST00000372216 CCDC88BA6NC98 1476 aa12.92□□□□□ -0.34
COL4A6-202ENST00000372216 KANK1Q14678 1352 aa12.92□□□□□ -0.34
COL4A6-202ENST00000372216 KNSTRNQ9Y448 316 aa12.92□□□□□ -0.34
COL4A6-202ENST00000372216 MROH2BQ7Z745 1585 aa12.91□□□□□ -0.34
COL4A6-202ENST00000372216 SOX12O15370 315 aa12.9□□□□□ -0.34
COL4A6-202ENST00000372216 SOGA1O94964 1423 aa12.89□□□□□ -0.35
COL4A6-202ENST00000372216 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.89□□□□□ -0.35
COL4A6-202ENST00000372216 NCLP19338 710 aaKnown RBP12.88□□□□□ -0.35
COL4A6-202ENST00000372216 ISY1Q9ULR0 285 aaKnown RBP12.88□□□□□ -0.35
COL4A6-202ENST00000372216 CARMIL2Q6F5E8 1435 aa12.87□□□□□ -0.35
COL4A6-202ENST00000372216 ABCC8Q09428 1581 aa12.87□□□□□ -0.35
COL4A6-202ENST00000372216 NAP1L2Q9ULW6 460 aaPredicted RBP12.86□□□□□ -0.35
COL4A6-202ENST00000372216 MIER1Q8N108 512 aa12.86□□□□□ -0.35
COL4A6-202ENST00000372216 TNNT2P45379 298 aaPredicted RBP12.85□□□□□ -0.35
COL4A6-202ENST00000372216 SIN3AQ96ST3 1273 aa12.84□□□□□ -0.35
COL4A6-202ENST00000372216 TDRD9Q8NDG6 1382 aaKnown RBP12.84□□□□□ -0.35
COL4A6-202ENST00000372216 NEUROD2Q15784 382 aa12.84□□□□□ -0.35
COL4A6-202ENST00000372216 HDGFP51858 240 aaKnown RBP12.83□□□□□ -0.36
COL4A6-202ENST00000372216 GGT6Q6P531 493 aa12.82□□□□□ -0.36
COL4A6-202ENST00000372216 MAPK8IP3Q9UPT6 1336 aa12.82□□□□□ -0.36
COL4A6-202ENST00000372216 DCAF11Q8TEB1 546 aa12.81□□□□□ -0.36
COL4A6-202ENST00000372216 WIZO95785 1651 aa12.81□□□□□ -0.36
COL4A6-202ENST00000372216 ARHGAP35Q9NRY4 1499 aa12.8□□□□□ -0.36
COL4A6-202ENST00000372216 GOLGA2Q08379 1002 aa12.8□□□□□ -0.36
COL4A6-202ENST00000372216 CC2D1BQ5T0F9 858 aaKnown RBP12.8□□□□□ -0.36
COL4A6-202ENST00000372216 NUDCQ9Y266 331 aa12.8□□□□□ -0.36
COL4A6-202ENST00000372216 TOP2AP11388 1531 aaKnown RBP12.79□□□□□ -0.36
COL4A6-202ENST00000372216 ANO8Q9HCE9 1232 aaPredicted RBP12.77□□□□□ -0.36
COL4A6-202ENST00000372216 SAFB2Q14151 953 aaKnown RBP eCLIP12.77□□□□□ -0.37
COL4A6-202ENST00000372216 ZRSR1Q15695 479 aaKnown RBP12.77□□□□□ -0.37
COL4A6-202ENST00000372216 SRPK2P78362 688 aaKnown RBP12.76□□□□□ -0.37
COL4A6-202ENST00000372216 OS9Q13438 667 aaPredicted RBP12.76□□□□□ -0.37
COL4A6-202ENST00000372216 TMF1P82094 1093 aa12.75□□□□□ -0.37
COL4A6-202ENST00000372216 FTSJ3Q8IY81 847 aaKnown RBP12.75□□□□□ -0.37
COL4A6-202ENST00000372216 U2SURPO15042 1029 aaKnown RBP12.75□□□□□ -0.37
COL4A6-202ENST00000372216 PLCB2Q00722 1185 aa12.75□□□□□ -0.37
COL4A6-202ENST00000372216 ZNF330Q9Y3S2 320 aaPredicted RBP12.75□□□□□ -0.37
COL4A6-202ENST00000372216 CCDC9Q9Y3X0 531 aaKnown RBP12.74□□□□□ -0.37
COL4A6-202ENST00000372216 STK26Q9P289 416 aa12.74□□□□□ -0.37
COL4A6-202ENST00000372216 CADPSQ9ULU8 1353 aa12.74□□□□□ -0.37
COL4A6-202ENST00000372216 PRM3Q9NNZ6 103 aa12.73□□□□□ -0.37
COL4A6-202ENST00000372216 EFCAB2Q5VUJ9 269 aa12.72□□□□□ -0.37
COL4A6-202ENST00000372216 FMN1Q68DA7 1419 aa12.71□□□□□ -0.37
COL4A6-202ENST00000372216 PKD2Q13563 968 aa12.71□□□□□ -0.37
COL4A6-202ENST00000372216 PTMAP06454 111 aaKnown RBP12.71□□□□□ -0.38
COL4A6-202ENST00000372216 PDE4CQ08493 712 aa12.7□□□□□ -0.38
COL4A6-202ENST00000372216 SETD5Q9C0A6 1442 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms